Wall clock time and date at job start Mon Mar 30 2020 01:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99658 * 2 1 4 4 H 1.48499 * 109.47026 * 269.99439 * 3 2 1 5 5 H 1.48496 * 109.47474 * 29.99475 * 3 2 1 6 6 H 1.48504 * 109.47117 * 150.00006 * 3 2 1 7 7 C 1.38949 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99803 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99737 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00395 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00020 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47238 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 12 10 15 15 C 1.39334 * 119.12780 * 124.99941 * 14 13 12 16 16 C 1.36576 * 119.94196 * 179.97438 * 15 14 13 17 17 C 1.40773 * 118.14582 * 359.97438 * 16 15 14 18 18 C 1.40427 * 121.37764 * 180.02562 * 17 16 15 19 19 C 1.36136 * 119.61441 * 180.02562 * 18 17 16 20 20 C 1.39358 * 120.86825 * 359.95371 * 19 18 17 21 21 C 1.36071 * 121.06685 * 0.02770 * 20 19 18 22 22 C 1.40592 * 119.74842 * 359.97438 * 21 20 19 23 23 N 1.31087 * 119.12658 * 304.73338 * 14 13 12 24 24 H 0.96999 * 120.00288 * 0.02562 * 1 2 3 25 25 H 0.96994 * 120.00506 * 359.97438 * 9 7 2 26 26 H 1.09001 * 109.46953 * 299.99667 * 12 10 9 27 27 H 1.09000 * 109.47318 * 59.99264 * 12 10 9 28 28 H 1.09001 * 109.46832 * 299.99686 * 13 12 10 29 29 H 1.09004 * 109.47261 * 59.99705 * 13 12 10 30 30 H 1.08005 * 120.02656 * 359.97429 * 15 14 13 31 31 H 1.07995 * 120.92850 * 179.97438 * 16 15 14 32 32 H 1.08002 * 120.19607 * 359.95830 * 18 17 16 33 33 H 1.08001 * 119.56426 * 179.97438 * 19 18 17 34 34 H 1.08003 * 119.46667 * 180.02562 * 20 19 18 35 35 H 1.08005 * 120.12325 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0000 13 6 2.2382 -6.0258 0.0007 14 6 1.4847 -7.3309 0.0008 15 6 1.7506 -8.2676 -0.9959 16 6 1.0779 -9.4561 -1.0114 17 6 0.1256 -9.6933 -0.0022 18 6 -0.6045 -10.8918 0.0470 19 6 -1.5172 -11.0834 1.0389 20 6 -1.7362 -10.1057 2.0075 21 6 -1.0462 -8.9330 1.9902 22 6 -0.0952 -8.6981 0.9818 23 7 0.6003 -7.5570 0.9415 24 1 -0.4850 0.8400 -0.0004 25 1 0.3535 -2.3907 0.0005 26 1 0.6170 -4.9209 0.8897 27 1 0.6175 -4.9205 -0.8902 28 1 2.8655 -5.9680 -0.8888 29 1 2.8642 -5.9680 0.8912 30 1 2.4882 -8.0540 -1.7554 31 1 1.2711 -10.1933 -1.7766 32 1 -0.4438 -11.6568 -0.6982 33 1 -2.0785 -12.0053 1.0757 34 1 -2.4655 -10.2816 2.7845 35 1 -1.2279 -8.1860 2.7487 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362725324.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:49 Heat of formation + Delta-G solvation = 2.267885 kcal Electronic energy + Delta-G solvation = -18834.081218 eV Core-core repulsion = 15796.214317 eV Total energy + Delta-G solvation = -3037.866901 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.89955 -38.29148 -37.34046 -34.06344 -33.60969 -32.83933 -31.17460 -30.21223 -29.51536 -25.98019 -24.31530 -23.61921 -22.24871 -21.63085 -19.00470 -18.20068 -17.77045 -17.29258 -16.40755 -15.58494 -14.96511 -14.73861 -14.52710 -14.37925 -14.28035 -13.91887 -13.73153 -13.20927 -12.93044 -12.60702 -12.14576 -11.84273 -11.74579 -11.56592 -11.26116 -11.17689 -11.06515 -10.66611 -10.52966 -10.36538 -10.17638 -9.47851 -9.40511 -8.75697 -8.41500 -8.27106 -7.92906 -6.37725 -3.78594 0.31391 0.74498 1.92093 2.82583 3.20383 3.28702 3.34888 3.97346 4.03536 4.16779 4.22044 4.44605 4.60120 4.70524 4.75337 4.97876 5.06703 5.17443 5.26737 5.29509 5.40772 5.60002 5.68281 5.78229 5.86042 5.90516 5.95393 6.12315 6.23526 6.27632 6.42604 6.50353 6.54926 6.57563 6.78956 7.58762 7.98600 8.09930 8.64882 9.21186 9.59544 10.10560 10.80007 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.036951 B = 0.003249 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.578530 B = 8615.344914 C = 9117.377803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.441 3.559 11 O -0.600 6.600 12 C -0.120 4.120 13 C -0.053 4.053 14 C 0.174 3.826 15 C -0.165 4.165 16 C -0.061 4.061 17 C -0.113 4.113 18 C -0.095 4.095 19 C -0.124 4.124 20 C -0.106 4.106 21 C -0.092 4.092 22 C 0.132 3.868 23 N -0.471 5.471 24 H 0.271 0.729 25 H 0.393 0.607 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.200 -21.399 -0.358 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.228 3.772 11 O -0.486 6.486 12 C -0.161 4.161 13 C -0.091 4.091 14 C 0.021 3.979 15 C -0.185 4.185 16 C -0.087 4.087 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.142 4.142 20 C -0.125 4.125 21 C -0.110 4.110 22 C 0.011 3.989 23 N -0.180 5.180 24 H 0.081 0.919 25 H 0.227 0.773 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.760 -20.646 0.354 20.989 hybrid contribution -0.161 0.194 -0.700 0.744 sum -3.921 -20.452 -0.346 20.827 Atomic orbital electron populations 1.69619 1.05943 1.28121 1.50569 1.25272 0.95624 0.99730 0.97356 0.85864 0.79246 0.80856 0.78349 1.20435 1.20938 1.19411 1.19728 0.93385 0.82365 1.47547 0.87923 1.41906 1.09288 1.04689 1.63896 1.19945 0.88214 0.85053 0.84026 1.90504 1.14021 1.87522 1.56534 1.21378 0.98438 0.92899 1.03422 1.20341 0.96475 0.87521 1.04740 1.21777 0.91403 0.95920 0.88807 1.21854 1.01679 0.94568 1.00400 1.21444 0.93617 0.97010 0.96617 1.18861 0.99135 0.96194 0.97324 1.20952 0.95905 0.95861 0.98702 1.20874 0.98667 0.99490 0.95203 1.20884 0.99382 0.93457 0.98816 1.20860 0.94820 0.97738 0.97614 1.18953 0.95722 0.89791 0.94480 1.67929 1.06635 1.19591 1.23830 0.91888 0.77337 0.89436 0.90791 0.89486 0.89000 0.84250 0.84499 0.85545 0.85795 0.85466 0.84649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.04 13.05 55.50 0.72 -24.32 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16 8 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 9 N -0.56 -14.72 5.29 -10.96 -0.06 -14.77 16 10 C 0.44 10.67 7.78 -10.98 -0.09 10.59 16 11 O -0.60 -16.34 15.56 5.54 0.09 -16.25 16 12 C -0.12 -2.24 5.55 -27.88 -0.15 -2.39 16 13 C -0.05 -0.86 4.88 -27.89 -0.14 -1.00 16 14 C 0.17 2.57 6.18 -82.50 -0.51 2.06 16 15 C -0.17 -1.98 9.62 -39.77 -0.38 -2.37 16 16 C -0.06 -0.65 9.90 -39.22 -0.39 -1.04 16 17 C -0.11 -1.36 5.74 -106.80 -0.61 -1.97 16 18 C -0.10 -0.89 9.78 -39.51 -0.39 -1.28 16 19 C -0.12 -1.06 9.95 -39.92 -0.40 -1.46 16 20 C -0.11 -0.98 9.94 -39.94 -0.40 -1.38 16 21 C -0.09 -1.09 9.98 -39.47 -0.39 -1.49 16 22 C 0.13 1.86 6.60 -84.86 -0.56 1.30 16 23 N -0.47 -7.46 9.82 -7.22 -0.07 -7.53 16 24 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.39 9.93 7.90 -40.82 -0.32 9.60 16 26 H 0.09 1.60 7.93 -51.93 -0.41 1.19 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.09 1.37 7.80 -51.93 -0.40 0.96 16 29 H 0.09 1.61 8.10 -51.93 -0.42 1.19 16 30 H 0.14 1.35 7.92 -52.48 -0.42 0.93 16 31 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 35 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 309.23 15.07 4.66 4.66 Total: -1.00 -32.84 309.23 -8.35 -41.19 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -4.02 Total: 9.34 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -4.65 Total: -8.63 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.60 Total: -46.62 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.09 Total: -16.25 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.84 -8.35 -41.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362725324.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.461 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds