Wall clock time and date at job start Mon Mar 30 2020 01:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99658 * 2 1 4 4 H 1.48499 * 109.47026 * 269.99439 * 3 2 1 5 5 H 1.48496 * 109.47474 * 29.99475 * 3 2 1 6 6 H 1.48504 * 109.47117 * 150.00006 * 3 2 1 7 7 C 1.38949 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99803 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99737 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00395 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00020 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47238 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 12 10 15 15 C 1.39334 * 119.12780 * 124.99941 * 14 13 12 16 16 C 1.36576 * 119.94196 * 179.97438 * 15 14 13 17 17 C 1.40773 * 118.14582 * 359.97438 * 16 15 14 18 18 C 1.40427 * 121.37764 * 180.02562 * 17 16 15 19 19 C 1.36136 * 119.61441 * 180.02562 * 18 17 16 20 20 C 1.39358 * 120.86825 * 359.95371 * 19 18 17 21 21 C 1.36071 * 121.06685 * 0.02770 * 20 19 18 22 22 C 1.40592 * 119.74842 * 359.97438 * 21 20 19 23 23 N 1.31087 * 119.12658 * 304.73338 * 14 13 12 24 24 H 0.96999 * 120.00288 * 0.02562 * 1 2 3 25 25 H 0.96994 * 120.00506 * 359.97438 * 9 7 2 26 26 H 1.09001 * 109.46953 * 299.99667 * 12 10 9 27 27 H 1.09000 * 109.47318 * 59.99264 * 12 10 9 28 28 H 1.09001 * 109.46832 * 299.99686 * 13 12 10 29 29 H 1.09004 * 109.47261 * 59.99705 * 13 12 10 30 30 H 1.08005 * 120.02656 * 359.97429 * 15 14 13 31 31 H 1.07995 * 120.92850 * 179.97438 * 16 15 14 32 32 H 1.08002 * 120.19607 * 359.95830 * 18 17 16 33 33 H 1.08001 * 119.56426 * 179.97438 * 19 18 17 34 34 H 1.08003 * 119.46667 * 180.02562 * 20 19 18 35 35 H 1.08005 * 120.12325 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0000 13 6 2.2382 -6.0258 0.0007 14 6 1.4847 -7.3309 0.0008 15 6 1.7506 -8.2676 -0.9959 16 6 1.0779 -9.4561 -1.0114 17 6 0.1256 -9.6933 -0.0022 18 6 -0.6045 -10.8918 0.0470 19 6 -1.5172 -11.0834 1.0389 20 6 -1.7362 -10.1057 2.0075 21 6 -1.0462 -8.9330 1.9902 22 6 -0.0952 -8.6981 0.9818 23 7 0.6003 -7.5570 0.9415 24 1 -0.4850 0.8400 -0.0004 25 1 0.3535 -2.3907 0.0005 26 1 0.6170 -4.9209 0.8897 27 1 0.6175 -4.9205 -0.8902 28 1 2.8655 -5.9680 -0.8888 29 1 2.8642 -5.9680 0.8912 30 1 2.4882 -8.0540 -1.7554 31 1 1.2711 -10.1933 -1.7766 32 1 -0.4438 -11.6568 -0.6982 33 1 -2.0785 -12.0053 1.0757 34 1 -2.4655 -10.2816 2.7845 35 1 -1.2279 -8.1860 2.7487 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362725324.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:48 Heat of formation + Delta-G solvation = -18.479416 kcal Electronic energy + Delta-G solvation = -18834.980889 eV Core-core repulsion = 15796.214317 eV Total energy + Delta-G solvation = -3038.766572 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.79302 -40.18044 -38.30815 -36.07286 -34.58210 -34.10201 -33.25446 -31.07469 -30.59460 -27.62276 -25.87131 -24.55785 -23.11577 -22.77109 -20.91269 -19.86479 -19.05975 -18.11504 -17.86859 -16.92987 -16.54504 -16.32465 -15.84830 -15.52332 -15.40035 -15.29601 -14.73183 -14.48544 -14.12262 -13.94969 -13.65021 -13.30002 -13.15633 -12.91700 -12.49331 -12.45475 -12.36995 -12.19248 -12.10165 -11.95721 -11.52800 -11.50092 -10.42988 -10.35177 -10.04129 -9.61477 -9.17222 -8.47835 -5.97614 -0.51080 -0.12633 1.08590 1.37537 1.40950 1.54631 1.99425 2.02438 2.29667 3.06298 3.17265 3.19252 3.31480 3.69104 3.79678 3.92905 4.02529 4.13700 4.25644 4.30560 4.32191 4.46345 4.55389 4.61408 4.76466 4.86794 5.02050 5.05770 5.13994 5.15976 5.25099 5.39770 5.46799 5.52580 5.65755 5.97461 5.98632 6.55947 7.01256 7.09297 7.52977 8.07156 8.69785 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.036951 B = 0.003249 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.578530 B = 8615.344914 C = 9117.377803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.082 0.918 9 N -0.573 5.573 10 C 0.439 3.561 11 O -0.632 6.632 12 C -0.104 4.104 13 C -0.043 4.043 14 C 0.155 3.845 15 C -0.178 4.178 16 C -0.048 4.048 17 C -0.129 4.129 18 C -0.094 4.094 19 C -0.122 4.122 20 C -0.093 4.093 21 C -0.125 4.125 22 C 0.100 3.900 23 N -0.507 5.507 24 H 0.278 0.722 25 H 0.396 0.604 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.160 0.840 31 H 0.178 0.822 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.155 0.845 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.217 -23.601 -1.251 24.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.100 0.900 9 N -0.209 5.209 10 C 0.228 3.772 11 O -0.521 6.521 12 C -0.145 4.145 13 C -0.082 4.082 14 C 0.003 3.997 15 C -0.197 4.197 16 C -0.074 4.074 17 C -0.131 4.131 18 C -0.112 4.112 19 C -0.139 4.139 20 C -0.112 4.112 21 C -0.143 4.143 22 C -0.021 4.021 23 N -0.216 5.216 24 H 0.088 0.912 25 H 0.229 0.771 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.178 0.822 31 H 0.195 0.805 32 H 0.179 0.821 33 H 0.178 0.822 34 H 0.172 0.828 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.800 -22.862 -0.539 23.367 hybrid contribution 0.055 0.725 -0.370 0.816 sum -4.744 -22.137 -0.910 22.658 Atomic orbital electron populations 1.69690 1.06995 1.29395 1.50169 1.26123 0.96568 1.02636 0.96104 0.84883 0.77856 0.76548 0.78770 1.19395 1.19516 1.19627 1.19741 0.92832 0.84020 1.50080 0.90034 1.42004 1.09352 1.04916 1.64594 1.20875 0.88103 0.86240 0.82016 1.90470 1.15762 1.88259 1.57563 1.21265 0.98477 0.90523 1.04211 1.20177 0.95940 0.88026 1.04044 1.21545 0.92097 0.95804 0.90291 1.22003 1.02750 0.94715 1.00262 1.21895 0.91942 0.96938 0.96592 1.19211 0.99930 0.96780 0.97138 1.21373 0.95014 0.95335 0.99511 1.21346 0.98198 1.00309 0.94092 1.21279 0.98425 0.92278 0.99260 1.20991 0.96142 0.99223 0.97969 1.19333 0.96513 0.90122 0.96124 1.67793 1.07696 1.21331 1.24816 0.91237 0.77078 0.89319 0.89019 0.88962 0.91020 0.82194 0.80474 0.82129 0.82188 0.82753 0.85468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.39 13.05 21.66 0.28 -51.11 16 2 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 3 Si 1.00 43.81 29.55 68.60 2.03 45.84 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.34 -19.80 9.68 84.04 0.81 -18.99 16 8 H 0.08 5.04 7.16 -2.91 -0.02 5.02 16 9 N -0.57 -31.05 5.29 -306.98 -1.62 -32.67 16 10 C 0.44 22.08 7.78 87.66 0.68 22.76 16 11 O -0.63 -35.88 15.56 -3.08 -0.05 -35.93 16 12 C -0.10 -4.01 5.55 29.85 0.17 -3.84 16 13 C -0.04 -1.49 4.88 29.85 0.15 -1.34 16 14 C 0.15 4.69 6.18 42.93 0.27 4.95 16 15 C -0.18 -4.07 9.62 22.14 0.21 -3.86 16 16 C -0.05 -0.91 9.90 22.50 0.22 -0.68 16 17 C -0.13 -2.83 5.74 -21.28 -0.12 -2.96 16 18 C -0.09 -1.40 9.78 22.31 0.22 -1.18 16 19 C -0.12 -1.61 9.95 22.05 0.22 -1.39 16 20 C -0.09 -1.52 9.94 22.04 0.22 -1.30 16 21 C -0.12 -2.97 9.98 22.34 0.22 -2.75 16 22 C 0.10 2.83 6.60 40.29 0.27 3.10 16 23 N -0.51 -16.64 9.82 -176.76 -1.74 -18.38 16 24 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 25 H 0.40 20.65 7.90 -92.71 -0.73 19.91 16 26 H 0.09 3.40 7.93 -2.39 -0.02 3.38 16 27 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 28 H 0.09 2.98 7.80 -2.39 -0.02 2.96 16 29 H 0.07 2.68 8.10 -2.38 -0.02 2.66 16 30 H 0.16 2.83 7.92 -2.91 -0.02 2.81 16 31 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 34 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 35 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -73.66 309.23 3.28 -70.37 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.38 Total: 29.69 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 4.00 Total: -7.82 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -3.08 Total: -102.16 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.05 Total: -35.93 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -73.66 3.28 -70.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362725324.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.893 kcal (2) G-P(sol) polarization free energy of solvation -73.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds