Wall clock time and date at job start Mon Mar 30 2020 01:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00140 * 2 1 4 4 H 1.48505 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47107 * 299.99920 * 3 2 1 6 6 H 1.48505 * 109.47054 * 60.00143 * 3 2 1 7 7 C 1.38952 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99863 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99898 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00184 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99571 * 179.97438 * 10 9 7 13 13 N 1.46908 * 109.46578 * 179.97438 * 12 10 9 14 14 C 1.46462 * 111.00165 * 297.61464 * 13 12 10 15 15 C 1.53243 * 109.86225 * 162.23635 * 14 13 12 16 16 S 1.81906 * 108.50405 * 61.99928 * 15 14 13 17 17 C 1.81898 * 101.91599 * 308.69816 * 16 15 14 18 18 C 1.46467 * 110.99425 * 171.63239 * 13 12 10 19 19 H 1.09000 * 109.40470 * 77.73140 * 18 13 12 20 20 C 1.53000 * 109.41037 * 317.88518 * 18 13 12 21 21 C 1.53001 * 117.49945 * 253.74245 * 20 18 13 22 22 C 1.52997 * 117.50033 * 185.11529 * 20 18 13 23 23 H 0.96998 * 119.99772 * 359.97438 * 1 2 3 24 24 H 0.96999 * 119.99886 * 359.97438 * 9 7 2 25 25 H 1.08997 * 109.46905 * 299.99575 * 12 10 9 26 26 H 1.08999 * 109.46904 * 60.00304 * 12 10 9 27 27 H 1.09005 * 109.40807 * 282.35766 * 14 13 12 28 28 H 1.09000 * 109.40942 * 42.11235 * 14 13 12 29 29 H 1.09000 * 109.63115 * 302.30004 * 15 14 13 30 30 H 1.08998 * 109.80127 * 181.80325 * 15 14 13 31 31 H 1.09002 * 109.63060 * 291.60413 * 17 16 15 32 32 H 1.08999 * 109.62939 * 171.01215 * 17 16 15 33 33 H 1.08997 * 115.54680 * 39.44668 * 20 18 13 34 34 H 1.08997 * 117.49513 * 359.97438 * 21 20 18 35 35 H 1.08993 * 117.49866 * 145.01929 * 21 20 18 36 36 H 1.09001 * 117.49851 * 214.97836 * 22 20 18 37 37 H 1.08998 * 117.49863 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3965 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0890 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2437 -4.8629 0.0011 13 7 2.1984 -5.9795 0.0004 14 6 3.0203 -5.9666 -1.2118 15 6 4.2685 -6.8309 -1.0038 16 16 3.7398 -8.5442 -0.6972 17 6 2.5186 -8.3280 0.6334 18 6 1.5113 -7.2576 0.1999 19 1 1.0381 -7.5639 -0.7330 20 6 0.4428 -7.0967 1.2831 21 6 0.7270 -7.7153 2.6532 22 6 -0.3092 -8.3534 1.7258 23 1 -0.4850 0.8400 0.0004 24 1 0.3534 -2.3906 0.0005 25 1 0.6175 -4.9204 0.8914 26 1 0.6168 -4.9208 -0.8886 27 1 2.4411 -6.3618 -2.0464 28 1 3.3215 -4.9430 -1.4343 29 1 4.8305 -6.4621 -0.1458 30 1 4.8952 -6.7950 -1.8949 31 1 3.0232 -8.0082 1.5452 32 1 1.9990 -9.2698 0.8101 33 1 -0.1134 -6.1596 1.2592 34 1 1.6750 -8.2373 2.7828 35 1 0.3579 -7.1852 3.5311 36 1 -1.3600 -8.2430 1.9936 37 1 -0.0430 -9.2948 1.2451 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408461815.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:19 Heat of formation + Delta-G solvation = 9.120296 kcal Electronic energy + Delta-G solvation = -19089.075962 eV Core-core repulsion = 16186.950155 eV Total energy + Delta-G solvation = -2902.125807 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.61598 -37.94436 -35.88633 -33.89529 -31.45310 -30.86108 -30.52567 -26.39625 -24.76168 -24.15079 -22.51933 -21.63685 -19.72341 -18.83646 -17.87352 -17.30592 -16.20607 -15.52453 -15.14583 -15.03127 -14.49908 -14.23893 -14.18799 -13.77714 -13.63489 -13.21489 -12.94834 -12.30122 -12.01965 -11.81659 -11.67407 -11.56662 -11.51540 -11.26391 -11.13516 -10.54784 -10.36644 -10.29871 -10.25971 -10.12988 -9.63301 -9.44984 -8.46698 -8.03254 -7.91979 -7.61044 -6.45533 -3.86360 1.88917 2.59888 3.13664 3.24780 3.31524 3.55963 3.83802 3.98621 4.19159 4.50850 4.79903 4.89166 4.94917 4.97138 5.08785 5.20740 5.28426 5.31141 5.42202 5.48954 5.56395 5.61680 5.75322 5.82833 5.85539 5.92321 6.04327 6.13729 6.19584 6.25777 6.29559 7.16983 7.34578 7.51935 8.02471 8.57058 9.14132 9.49972 10.00988 10.72153 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.004840 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.173056 B = 5784.194501 C = 6611.661762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.562 5.562 10 C 0.442 3.558 11 O -0.578 6.578 12 C 0.043 3.957 13 N -0.521 5.521 14 C 0.053 3.947 15 C -0.060 4.060 16 S -0.297 6.297 17 C -0.065 4.065 18 C 0.118 3.882 19 H 0.055 0.945 20 C -0.157 4.157 21 C -0.174 4.174 22 C -0.179 4.179 23 H 0.271 0.729 24 H 0.392 0.608 25 H 0.100 0.900 26 H 0.048 0.952 27 H 0.034 0.966 28 H 0.118 0.882 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 -14.727 0.954 14.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.198 5.198 10 C 0.227 3.773 11 O -0.463 6.463 12 C -0.088 4.088 13 N -0.246 5.246 14 C -0.076 4.076 15 C -0.209 4.209 16 S -0.070 6.070 17 C -0.214 4.214 18 C 0.008 3.992 19 H 0.073 0.927 20 C -0.176 4.176 21 C -0.211 4.211 22 C -0.217 4.217 23 H 0.081 0.919 24 H 0.225 0.775 25 H 0.117 0.883 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.137 0.863 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.322 -15.463 0.814 15.488 hybrid contribution -1.188 1.841 -0.023 2.191 sum -0.866 -13.622 0.790 13.672 Atomic orbital electron populations 1.69618 1.05958 1.28105 1.50543 1.25264 0.95622 0.99740 0.97258 0.85808 0.79721 0.81135 0.77730 1.19208 1.20751 1.20729 1.19747 0.93385 0.82155 1.47543 0.87832 1.41873 1.09203 1.04598 1.64174 1.19732 0.88409 0.84559 0.84555 1.90477 1.13683 1.86830 1.55281 1.21977 0.94236 0.90609 1.01933 1.60675 1.23735 1.01069 1.39122 1.22404 0.92668 1.03097 0.89459 1.23480 1.00395 0.91302 1.05697 1.86685 1.54233 1.15964 1.50088 1.23650 0.97365 1.01347 0.99007 1.21243 0.91541 0.89593 0.96789 0.92696 1.22631 1.00625 0.98197 0.96192 1.23060 1.00484 1.03804 0.93734 1.22988 0.97694 0.96720 1.04257 0.91891 0.77498 0.88258 0.93393 0.94743 0.86453 0.88669 0.87920 0.88671 0.87975 0.86285 0.88268 0.88735 0.88667 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.14 13.05 55.50 0.72 -23.42 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.76 29.55 -169.99 -5.02 15.73 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 8 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 9 N -0.56 -13.87 5.29 -10.96 -0.06 -13.92 16 10 C 0.44 10.07 7.32 -10.98 -0.08 9.99 16 11 O -0.58 -14.92 13.77 5.55 0.08 -14.85 16 12 C 0.04 0.75 4.97 -4.97 -0.02 0.72 16 13 N -0.52 -8.49 4.12 -228.47 -0.94 -9.43 16 14 C 0.05 0.86 4.94 -3.94 -0.02 0.84 16 15 C -0.06 -0.89 6.69 37.28 0.25 -0.64 16 16 S -0.30 -4.09 22.40 -107.50 -2.41 -6.50 16 17 C -0.07 -0.80 4.58 37.29 0.17 -0.63 16 18 C 0.12 1.56 2.31 -67.82 -0.16 1.41 16 19 H 0.06 0.74 7.91 -51.93 -0.41 0.33 16 20 C -0.16 -1.84 5.24 -90.62 -0.48 -2.32 16 21 C -0.17 -1.82 9.66 -26.73 -0.26 -2.07 16 22 C -0.18 -1.68 9.86 -26.73 -0.26 -1.95 16 23 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 24 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 25 H 0.10 1.57 5.25 -51.93 -0.27 1.30 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.53 7.91 -51.93 -0.41 0.12 16 28 H 0.12 2.28 5.45 -51.93 -0.28 2.00 16 29 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.09 1.23 6.89 -51.93 -0.36 0.88 16 32 H 0.10 1.07 6.84 -51.93 -0.36 0.71 16 33 H 0.12 1.46 5.44 -51.93 -0.28 1.18 16 34 H 0.10 1.01 5.93 -51.93 -0.31 0.70 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.80 7.25 -51.93 -0.38 0.43 16 LS Contribution 303.20 15.07 4.57 4.57 Total: -1.00 -29.27 303.20 -9.16 -38.43 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -5.00 Total: 11.82 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -1.10 Total: -2.44 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.27 Total: -46.77 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.08 Total: -14.85 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -4.09 SS G_CDS: -2.41 Total: -6.50 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.27 -9.16 -38.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408461815.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.555 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds