Wall clock time and date at job start Mon Mar 30 2020 01:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99903 * 2 1 4 4 H 1.48503 * 109.46974 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46695 * 300.00075 * 3 2 1 6 6 H 1.48497 * 109.46970 * 60.00044 * 3 2 1 7 7 C 1.38947 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00351 * 179.97438 * 7 2 1 9 9 N 1.37105 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00258 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99722 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00122 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47167 * 179.97438 * 12 10 9 14 14 C 1.46473 * 111.00135 * 64.01845 * 13 12 10 15 15 C 1.53251 * 109.85802 * 197.76402 * 14 13 12 16 16 S 1.81990 * 108.65781 * 298.11745 * 15 14 13 17 17 C 1.81896 * 101.87890 * 51.03713 * 16 15 14 18 18 C 1.46467 * 111.00242 * 190.00227 * 13 12 10 19 19 H 1.09003 * 109.40269 * 282.35491 * 18 13 12 20 20 C 1.53006 * 109.34218 * 42.15129 * 18 13 12 21 21 C 1.53000 * 117.49731 * 249.10639 * 20 18 13 22 22 C 1.52995 * 117.49696 * 180.44740 * 20 18 13 23 23 H 0.96996 * 120.00322 * 0.02562 * 1 2 3 24 24 H 0.97002 * 119.99365 * 359.97438 * 9 7 2 25 25 H 1.08998 * 109.47199 * 60.00034 * 12 10 9 26 26 H 1.09000 * 109.47144 * 299.99654 * 12 10 9 27 27 H 1.08997 * 109.40406 * 317.88949 * 14 13 12 28 28 H 1.08999 * 109.40168 * 77.64710 * 14 13 12 29 29 H 1.09005 * 109.62990 * 57.70700 * 15 14 13 30 30 H 1.09002 * 109.62342 * 178.09306 * 15 14 13 31 31 H 1.09002 * 109.63170 * 189.15212 * 17 16 15 32 32 H 1.08995 * 109.62947 * 68.76151 * 17 16 15 33 33 H 1.09001 * 115.54727 * 34.77849 * 20 18 13 34 34 H 1.08993 * 117.50190 * 0.02562 * 21 20 18 35 35 H 1.09000 * 117.49260 * 145.01817 * 21 20 18 36 36 H 1.09009 * 117.49685 * 214.97991 * 22 20 18 37 37 H 1.08999 * 117.50583 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8892 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1984 -5.9795 0.0004 14 6 2.9958 -5.9892 1.2290 15 6 4.2481 -6.8498 1.0300 16 16 3.7303 -8.5584 0.6772 17 6 2.5319 -8.3160 -0.6695 18 6 1.5158 -7.2535 -0.2366 19 1 1.0228 -7.5762 0.6804 20 6 0.4703 -7.0710 -1.3387 21 6 -1.0032 -7.1507 -0.9347 22 6 -0.3643 -8.2921 -1.7298 23 1 -0.4850 0.8400 -0.0004 24 1 0.3534 -2.3906 0.0005 25 1 0.6168 -4.9209 -0.8886 26 1 0.6175 -4.9205 0.8914 27 1 3.2922 -4.9699 1.4764 28 1 2.3999 -6.3997 2.0441 29 1 4.8272 -6.4651 0.1905 30 1 4.8555 -6.8270 1.9348 31 1 2.0161 -9.2542 -0.8740 32 1 3.0521 -7.9810 -1.5667 33 1 0.7383 -6.3703 -2.1295 34 1 -1.2279 -7.3327 0.1162 35 1 -1.7047 -6.5026 -1.4600 36 1 -0.6459 -8.3946 -2.7779 37 1 -0.1685 -9.2257 -1.2023 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408461821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:21 Heat of formation + Delta-G solvation = -0.450476 kcal Electronic energy + Delta-G solvation = -19076.120181 eV Core-core repulsion = 16173.579354 eV Total energy + Delta-G solvation = -2902.540827 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.50702 -37.83232 -35.86468 -33.88840 -31.40189 -31.05214 -30.58194 -26.37286 -24.36118 -24.11758 -22.39515 -21.62085 -20.03231 -19.08681 -17.87911 -16.82853 -16.29294 -15.74621 -15.07850 -14.74108 -14.46090 -14.23399 -14.06509 -13.76645 -13.61431 -13.30135 -12.98908 -12.28568 -12.05417 -11.78786 -11.70115 -11.55463 -11.47677 -11.37247 -11.11297 -10.60052 -10.38419 -10.34593 -10.26052 -10.24502 -9.58278 -9.43508 -8.49122 -8.02401 -7.92644 -7.60618 -6.44505 -3.85346 1.90291 2.60059 3.14242 3.25201 3.32032 3.62862 3.80972 3.88840 4.18481 4.59346 4.75441 4.88310 4.98225 5.08006 5.14871 5.21322 5.25430 5.37482 5.39563 5.44551 5.54522 5.60948 5.79296 5.80263 5.92280 5.94429 6.02055 6.12172 6.19369 6.25704 6.28380 7.17222 7.34964 7.52779 8.03647 8.58409 9.15264 9.51453 10.02639 10.73204 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.024301 B = 0.004957 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.930218 B = 5647.643592 C = 6601.726234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.579 6.579 12 C 0.050 3.950 13 N -0.523 5.523 14 C 0.056 3.944 15 C -0.061 4.061 16 S -0.297 6.297 17 C -0.060 4.060 18 C 0.120 3.880 19 H 0.051 0.949 20 C -0.149 4.149 21 C -0.178 4.178 22 C -0.176 4.176 23 H 0.271 0.729 24 H 0.392 0.608 25 H 0.097 0.903 26 H 0.047 0.953 27 H 0.114 0.886 28 H 0.034 0.966 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 -14.650 -0.529 14.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.227 3.773 11 O -0.463 6.463 12 C -0.081 4.081 13 N -0.248 5.248 14 C -0.073 4.073 15 C -0.209 4.209 16 S -0.070 6.070 17 C -0.208 4.208 18 C 0.009 3.991 19 H 0.069 0.931 20 C -0.169 4.169 21 C -0.215 4.215 22 C -0.213 4.213 23 H 0.081 0.919 24 H 0.225 0.775 25 H 0.115 0.885 26 H 0.065 0.935 27 H 0.132 0.868 28 H 0.053 0.947 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.135 0.865 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.229 -15.390 -0.397 15.397 hybrid contribution -1.190 1.842 0.026 2.194 sum -1.420 -13.548 -0.371 13.627 Atomic orbital electron populations 1.69615 1.05949 1.28081 1.50598 1.25257 0.95617 0.99721 0.97295 0.85812 0.79721 0.81169 0.77721 1.19217 1.20742 1.20760 1.19745 0.93375 0.82175 1.47515 0.87856 1.41877 1.09208 1.04594 1.64234 1.19780 0.88424 0.84614 0.84507 1.90488 1.13679 1.86910 1.55271 1.21838 0.93854 0.90369 1.02015 1.60714 1.24918 1.01388 1.37737 1.22349 0.92845 1.02770 0.89369 1.23490 1.00424 0.91468 1.05551 1.86690 1.56002 1.15738 1.48575 1.23459 0.97238 1.01377 0.98775 1.21321 0.91901 0.89618 0.96210 0.93089 1.22362 0.91426 1.01804 1.01272 1.23086 0.95339 1.02154 1.00914 1.22964 1.04251 0.93201 1.00898 0.91908 0.77493 0.88531 0.93513 0.86789 0.94737 0.88641 0.87933 0.87943 0.88960 0.86526 0.88844 0.88406 0.88610 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 8 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 9 N -0.56 -13.94 5.29 -10.96 -0.06 -13.99 16 10 C 0.44 10.09 7.32 -10.99 -0.08 10.01 16 11 O -0.58 -15.01 13.91 5.54 0.08 -14.93 16 12 C 0.05 0.87 5.09 -4.98 -0.03 0.85 16 13 N -0.52 -8.49 4.09 -228.47 -0.93 -9.43 16 14 C 0.06 0.91 4.96 -3.93 -0.02 0.89 16 15 C -0.06 -0.89 6.68 37.29 0.25 -0.64 16 16 S -0.30 -4.10 22.41 -107.50 -2.41 -6.50 16 17 C -0.06 -0.74 5.82 37.29 0.22 -0.52 16 18 C 0.12 1.57 2.12 -67.82 -0.14 1.42 16 19 H 0.05 0.68 7.67 -51.93 -0.40 0.29 16 20 C -0.15 -1.72 3.43 -90.62 -0.31 -2.03 16 21 C -0.18 -1.81 10.11 -26.69 -0.27 -2.08 16 22 C -0.18 -1.62 9.72 -26.70 -0.26 -1.88 16 23 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 24 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 25 H 0.10 1.55 5.74 -51.93 -0.30 1.25 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.11 2.20 5.61 -51.93 -0.29 1.91 16 28 H 0.03 0.53 7.91 -51.93 -0.41 0.12 16 29 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.10 1.07 7.24 -51.93 -0.38 0.69 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.12 1.50 7.40 -51.93 -0.38 1.12 16 34 H 0.09 0.94 8.05 -51.93 -0.42 0.52 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 37 H 0.09 0.79 7.61 -51.93 -0.39 0.40 16 LS Contribution 309.49 15.07 4.66 4.66 Total: -1.00 -29.26 309.49 -9.18 -38.44 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -5.34 Total: 11.25 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -0.88 Total: -1.80 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.27 Total: -46.89 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.08 Total: -14.93 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -4.10 SS G_CDS: -2.41 Total: -6.50 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.26 -9.18 -38.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408461821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.990 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds