Wall clock time and date at job start Mon Mar 30 2020 01:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99903 * 2 1 4 4 H 1.48503 * 109.46974 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46695 * 300.00075 * 3 2 1 6 6 H 1.48497 * 109.46970 * 60.00044 * 3 2 1 7 7 C 1.38947 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00351 * 179.97438 * 7 2 1 9 9 N 1.37105 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00258 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99722 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00122 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47167 * 179.97438 * 12 10 9 14 14 C 1.46473 * 111.00135 * 64.01845 * 13 12 10 15 15 C 1.53251 * 109.85802 * 197.76402 * 14 13 12 16 16 S 1.81990 * 108.65781 * 298.11745 * 15 14 13 17 17 C 1.81896 * 101.87890 * 51.03713 * 16 15 14 18 18 C 1.46467 * 111.00242 * 190.00227 * 13 12 10 19 19 H 1.09003 * 109.40269 * 282.35491 * 18 13 12 20 20 C 1.53006 * 109.34218 * 42.15129 * 18 13 12 21 21 C 1.53000 * 117.49731 * 249.10639 * 20 18 13 22 22 C 1.52995 * 117.49696 * 180.44740 * 20 18 13 23 23 H 0.96996 * 120.00322 * 0.02562 * 1 2 3 24 24 H 0.97002 * 119.99365 * 359.97438 * 9 7 2 25 25 H 1.08998 * 109.47199 * 60.00034 * 12 10 9 26 26 H 1.09000 * 109.47144 * 299.99654 * 12 10 9 27 27 H 1.08997 * 109.40406 * 317.88949 * 14 13 12 28 28 H 1.08999 * 109.40168 * 77.64710 * 14 13 12 29 29 H 1.09005 * 109.62990 * 57.70700 * 15 14 13 30 30 H 1.09002 * 109.62342 * 178.09306 * 15 14 13 31 31 H 1.09002 * 109.63170 * 189.15212 * 17 16 15 32 32 H 1.08995 * 109.62947 * 68.76151 * 17 16 15 33 33 H 1.09001 * 115.54727 * 34.77849 * 20 18 13 34 34 H 1.08993 * 117.50190 * 0.02562 * 21 20 18 35 35 H 1.09000 * 117.49260 * 145.01817 * 21 20 18 36 36 H 1.09009 * 117.49685 * 214.97991 * 22 20 18 37 37 H 1.08999 * 117.50583 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8892 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1984 -5.9795 0.0004 14 6 2.9958 -5.9892 1.2290 15 6 4.2481 -6.8498 1.0300 16 16 3.7303 -8.5584 0.6772 17 6 2.5319 -8.3160 -0.6695 18 6 1.5158 -7.2535 -0.2366 19 1 1.0228 -7.5762 0.6804 20 6 0.4703 -7.0710 -1.3387 21 6 -1.0032 -7.1507 -0.9347 22 6 -0.3643 -8.2921 -1.7298 23 1 -0.4850 0.8400 -0.0004 24 1 0.3534 -2.3906 0.0005 25 1 0.6168 -4.9209 -0.8886 26 1 0.6175 -4.9205 0.8914 27 1 3.2922 -4.9699 1.4764 28 1 2.3999 -6.3997 2.0441 29 1 4.8272 -6.4651 0.1905 30 1 4.8555 -6.8270 1.9348 31 1 2.0161 -9.2542 -0.8740 32 1 3.0521 -7.9810 -1.5667 33 1 0.7383 -6.3703 -2.1295 34 1 -1.2279 -7.3327 0.1162 35 1 -1.7047 -6.5026 -1.4600 36 1 -0.6459 -8.3946 -2.7779 37 1 -0.1685 -9.2257 -1.2023 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408461821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:20 Heat of formation + Delta-G solvation = -19.193843 kcal Electronic energy + Delta-G solvation = -19076.932954 eV Core-core repulsion = 16173.579354 eV Total energy + Delta-G solvation = -2903.353600 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.86453 -39.36248 -37.02219 -35.83811 -33.32805 -32.18513 -31.94082 -28.01280 -25.88442 -25.39800 -23.15405 -22.81084 -21.35641 -20.62308 -19.84064 -18.11826 -17.52105 -17.13926 -16.72849 -16.17988 -15.91328 -15.59072 -15.41996 -15.18318 -14.83626 -14.59248 -14.26499 -13.85658 -13.44172 -13.31615 -13.04264 -12.83295 -12.80053 -12.65059 -12.40028 -12.23909 -12.12152 -11.77729 -11.44788 -11.24696 -11.14180 -10.59322 -10.25199 -9.99065 -9.32819 -8.71538 -8.46515 -5.94824 0.81609 1.36142 1.41823 1.49651 1.55516 2.04690 2.26782 2.55678 2.88600 3.20495 3.31745 3.66960 3.83297 3.94717 4.05290 4.12099 4.14561 4.19347 4.32037 4.42474 4.45019 4.47370 4.52381 4.63602 4.83111 4.84901 4.88301 5.00802 5.07203 5.25693 5.31065 5.41542 5.80082 6.03436 6.16143 6.60394 7.13260 7.56496 8.11791 8.71097 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.024301 B = 0.004957 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.930218 B = 5647.643592 C = 6601.726234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.274 1.274 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.330 4.330 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.440 3.560 11 O -0.612 6.612 12 C 0.066 3.934 13 N -0.538 5.538 14 C 0.060 3.940 15 C -0.059 4.059 16 S -0.294 6.294 17 C -0.055 4.055 18 C 0.125 3.875 19 H 0.056 0.944 20 C -0.167 4.167 21 C -0.177 4.177 22 C -0.154 4.154 23 H 0.277 0.723 24 H 0.395 0.605 25 H 0.114 0.886 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.130 0.870 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.679 -15.910 -0.757 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.460 4.460 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.228 3.772 11 O -0.499 6.499 12 C -0.064 4.064 13 N -0.263 5.263 14 C -0.069 4.069 15 C -0.207 4.207 16 S -0.066 6.066 17 C -0.204 4.204 18 C 0.015 3.985 19 H 0.073 0.927 20 C -0.187 4.187 21 C -0.214 4.214 22 C -0.191 4.191 23 H 0.087 0.913 24 H 0.229 0.771 25 H 0.132 0.868 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.134 0.866 31 H 0.148 0.852 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.309 -16.672 -0.626 16.735 hybrid contribution -0.854 2.152 0.081 2.317 sum -2.163 -14.520 -0.546 14.690 Atomic orbital electron populations 1.69672 1.06805 1.29181 1.50490 1.25998 0.96497 1.02304 0.96358 0.84898 0.78046 0.77278 0.78282 1.19846 1.19688 1.19653 1.19677 0.92647 0.83932 1.49695 0.90314 1.41929 1.09285 1.04677 1.65139 1.20750 0.88325 0.85894 0.82263 1.90468 1.15543 1.87725 1.56127 1.21656 0.93437 0.87836 1.03490 1.60692 1.25293 1.02522 1.37797 1.22213 0.93750 1.01065 0.89905 1.23379 0.99632 0.92185 1.05536 1.86669 1.56604 1.14201 1.49135 1.23542 0.96747 1.02353 0.97722 1.21347 0.92232 0.87905 0.96970 0.92664 1.22220 0.91852 1.03791 1.00837 1.23155 0.94071 1.02773 1.01450 1.23058 1.01646 0.92745 1.01660 0.91343 0.77090 0.86783 0.91985 0.90372 0.93654 0.90520 0.86570 0.85238 0.89742 0.88058 0.88491 0.88084 0.87414 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.27 13.05 21.66 0.28 -48.99 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.33 -18.55 9.68 84.04 0.81 -17.73 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 N -0.57 -29.07 5.29 -306.98 -1.62 -30.69 16 10 C 0.44 20.63 7.32 87.66 0.64 21.27 16 11 O -0.61 -32.97 13.91 -3.08 -0.04 -33.02 16 12 C 0.07 2.29 5.09 85.56 0.44 2.73 16 13 N -0.54 -17.21 4.09 -876.75 -3.58 -20.79 16 14 C 0.06 1.96 4.96 86.47 0.43 2.38 16 15 C -0.06 -1.72 6.68 72.07 0.48 -1.23 16 16 S -0.29 -7.60 22.41 -56.49 -1.27 -8.87 16 17 C -0.06 -1.25 5.82 72.06 0.42 -0.83 16 18 C 0.12 3.03 2.12 45.08 0.10 3.13 16 19 H 0.06 1.33 7.67 -2.39 -0.02 1.31 16 20 C -0.17 -3.50 3.43 -10.79 -0.04 -3.53 16 21 C -0.18 -3.13 10.11 30.62 0.31 -2.82 16 22 C -0.15 -2.32 9.72 30.62 0.30 -2.02 16 23 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 24 H 0.40 19.12 7.90 -92.71 -0.73 18.39 16 25 H 0.11 3.56 5.74 -2.39 -0.01 3.55 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 3.14 5.61 -2.39 -0.01 3.12 16 28 H 0.05 1.36 7.91 -2.39 -0.02 1.34 16 29 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 30 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 31 H 0.13 2.24 7.24 -2.39 -0.02 2.22 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.10 2.47 7.40 -2.39 -0.02 2.46 16 34 H 0.10 1.66 8.05 -2.39 -0.02 1.64 16 35 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.11 1.36 7.61 -2.39 -0.02 1.34 16 Total: -1.00 -63.44 309.49 0.49 -62.95 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: 0.34 Total: 33.48 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 4.35 Total: 1.18 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -4.92 Total: -100.47 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.04 Total: -33.02 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: -7.60 SS G_CDS: -1.27 Total: -8.87 kcal Total: -63.44 0.49 -62.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408461821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.756 kcal (2) G-P(sol) polarization free energy of solvation -63.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds