Wall clock time and date at job start Mon Mar 30 2020 01:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00006 * 179.97438 * 10 9 7 12 12 O 1.21719 * 119.99944 * 0.02562 * 11 10 9 13 13 C 1.46585 * 120.00469 * 179.97438 * 11 10 9 14 14 C 1.38044 * 126.00989 * 180.02562 * 13 11 10 15 15 C 1.39360 * 107.44297 * 180.02562 * 14 13 11 16 16 C 1.37821 * 107.65496 * 359.97438 * 15 14 13 17 17 C 1.47801 * 125.82402 * 179.97438 * 16 15 14 18 18 C 1.39600 * 120.14671 * 179.74734 * 17 16 15 19 19 C 1.37955 * 119.85073 * 179.76858 * 18 17 16 20 20 C 1.38356 * 120.14981 * 0.51299 * 19 18 17 21 21 C 1.38366 * 120.29309 * 359.74616 * 20 19 18 22 22 C 1.37958 * 120.14776 * 359.97438 * 21 20 19 23 23 N 1.36408 * 108.34908 * 359.73801 * 16 15 14 24 24 H 0.97005 * 125.71679 * 180.29823 * 23 16 15 25 25 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 27 27 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 28 28 H 0.96998 * 120.00192 * 0.02562 * 10 9 7 29 29 H 1.08002 * 126.27660 * 359.95780 * 14 13 11 30 30 H 1.08002 * 126.17098 * 179.97438 * 15 14 13 31 31 H 1.08006 * 120.07213 * 0.02562 * 18 17 16 32 32 H 1.08004 * 119.92426 * 180.25556 * 19 18 17 33 33 H 1.07994 * 119.85728 * 179.76081 * 20 19 18 34 34 H 1.08005 * 119.92621 * 180.02562 * 21 20 19 35 35 H 1.07999 * 120.07246 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 1.7538 -4.8833 -0.0019 12 8 0.5571 -5.1057 -0.0029 13 6 2.7062 -5.9975 -0.0022 14 6 2.3848 -7.3400 -0.0031 15 6 3.5805 -8.0559 -0.0025 16 6 4.6137 -7.1438 -0.0018 17 6 6.0553 -7.4697 -0.0005 18 6 7.0054 -6.4469 -0.0053 19 6 8.3494 -6.7580 0.0008 20 6 8.7566 -8.0803 0.0009 21 6 7.8202 -9.0989 0.0001 22 6 6.4730 -8.8017 -0.0001 23 7 4.0788 -5.8890 -0.0079 24 1 4.5813 -5.0592 -0.0130 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5575 0.8880 27 1 0.6246 -2.5563 -0.8919 28 1 3.1566 -3.4354 -0.0003 29 1 1.3892 -7.7588 -0.0031 30 1 3.6796 -9.1313 -0.0026 31 1 6.6888 -5.4142 -0.0095 32 1 9.0854 -5.9676 0.0013 33 1 9.8099 -8.3185 0.0017 34 1 8.1446 -10.1291 0.0006 35 1 5.7431 -9.5977 -0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427614306.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:24 Heat of formation + Delta-G solvation = -1.794098 kcal Electronic energy + Delta-G solvation = -18815.805906 eV Core-core repulsion = 15777.762864 eV Total energy + Delta-G solvation = -3038.043042 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.36077 -40.24190 -39.44566 -36.29017 -34.48530 -32.99086 -32.51574 -31.52448 -30.07407 -28.53022 -25.36592 -24.02616 -23.58339 -22.33278 -21.41903 -20.86369 -20.13259 -18.43040 -17.61773 -17.09010 -16.66150 -16.44596 -16.10826 -15.74154 -15.28805 -15.19513 -14.93131 -14.51869 -14.26448 -14.09542 -13.99802 -13.65056 -13.52095 -13.43242 -12.94285 -12.78562 -12.28011 -12.19001 -11.88599 -11.52227 -11.16763 -10.87324 -10.45777 -10.09801 -9.99232 -9.86739 -8.65498 -8.33379 -6.50901 -0.19805 0.49927 0.74213 1.40900 1.42391 1.55431 1.82122 1.92644 2.25119 2.35452 2.46572 2.98994 3.01780 3.59961 3.87996 3.96188 4.07979 4.25896 4.30482 4.41161 4.57460 4.61501 4.87313 5.01309 5.05299 5.13655 5.16062 5.16877 5.34762 5.40933 5.53707 5.57871 5.62296 5.76813 5.80550 5.85998 6.05689 6.33191 6.57211 6.75359 7.14441 7.29050 8.79150 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.021449 B = 0.003811 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.092424 B = 7344.852595 C = 8634.797833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.987 3.013 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.559 4.559 8 H 0.084 0.916 9 C 0.266 3.734 10 N -0.704 5.704 11 C 0.569 3.431 12 O -0.589 6.589 13 C -0.061 4.061 14 C -0.115 4.115 15 C -0.188 4.188 16 C 0.090 3.910 17 C -0.041 4.041 18 C -0.133 4.133 19 C -0.122 4.122 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.104 4.104 23 N -0.523 5.523 24 H 0.424 0.576 25 H 0.270 0.730 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.402 0.598 29 H 0.148 0.852 30 H 0.176 0.824 31 H 0.122 0.878 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.020 -17.159 -0.010 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.810 3.190 4 H -0.176 1.176 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.596 4.596 8 H 0.102 0.898 9 C 0.144 3.856 10 N -0.353 5.353 11 C 0.358 3.642 12 O -0.470 6.470 13 C -0.175 4.175 14 C -0.142 4.142 15 C -0.211 4.211 16 C -0.027 4.027 17 C -0.042 4.042 18 C -0.152 4.152 19 C -0.140 4.140 20 C -0.138 4.138 21 C -0.135 4.135 22 C -0.122 4.122 23 N -0.119 5.119 24 H 0.264 0.736 25 H 0.079 0.921 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.236 0.764 29 H 0.166 0.834 30 H 0.194 0.806 31 H 0.140 0.860 32 H 0.160 0.840 33 H 0.165 0.835 34 H 0.170 0.830 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 20.037 -16.965 -0.015 26.254 hybrid contribution 0.067 1.644 0.000 1.645 sum 20.104 -15.321 -0.015 25.276 Atomic orbital electron populations 1.70145 1.08277 1.28656 1.49625 1.26077 0.95815 1.03931 0.93688 0.85078 0.79006 0.77146 0.77775 1.17643 1.20345 1.20355 1.21598 0.94248 0.90423 1.53373 0.89847 1.18638 0.88556 0.83853 0.94570 1.46086 1.10936 1.05447 1.72835 1.17639 0.87501 0.82583 0.76510 1.90771 1.17368 1.85159 1.53742 1.20237 0.82285 0.95154 1.19776 1.21401 1.00093 0.90147 1.02557 1.21359 0.89387 1.00120 1.10247 1.19517 0.93079 0.83487 1.06646 1.18193 0.87787 0.95068 1.03150 1.21365 0.93902 0.98681 1.01243 1.21341 0.95231 0.97927 0.99487 1.21640 1.01153 0.92489 0.98550 1.21455 0.92167 1.00960 0.98955 1.21405 0.97304 0.94667 0.98861 1.41997 1.05069 1.08709 1.56149 0.73646 0.92103 0.98970 0.98956 0.76356 0.83434 0.80623 0.86048 0.84026 0.83466 0.82988 0.83742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 2 C 0.00 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.99 42.12 29.54 68.60 2.03 44.15 16 4 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.56 -30.52 9.28 25.60 0.24 -30.28 16 8 H 0.08 4.10 7.60 -2.91 -0.02 4.07 16 9 C 0.27 14.90 5.43 85.64 0.46 15.37 16 10 N -0.70 -31.34 5.54 -470.89 -2.61 -33.95 16 11 C 0.57 25.28 7.78 86.42 0.67 25.95 16 12 O -0.59 -31.32 16.87 -4.41 -0.07 -31.39 16 13 C -0.06 -2.09 7.04 40.36 0.28 -1.81 16 14 C -0.12 -3.53 10.60 22.49 0.24 -3.30 16 15 C -0.19 -4.44 10.22 22.44 0.23 -4.21 16 16 C 0.09 2.13 6.93 40.87 0.28 2.41 16 17 C -0.04 -0.79 5.87 -20.09 -0.12 -0.91 16 18 C -0.13 -2.35 9.70 22.53 0.22 -2.13 16 19 C -0.12 -1.71 10.03 22.23 0.22 -1.49 16 20 C -0.12 -1.41 10.04 22.33 0.22 -1.18 16 21 C -0.12 -1.39 10.03 22.23 0.22 -1.16 16 22 C -0.10 -1.57 9.57 22.53 0.22 -1.35 16 23 N -0.52 -13.85 5.90 -172.31 -1.02 -14.87 16 24 H 0.42 9.36 7.24 -92.70 -0.67 8.69 16 25 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 26 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H 0.40 14.66 7.42 -92.71 -0.69 13.98 16 29 H 0.15 4.46 8.06 -2.91 -0.02 4.44 16 30 H 0.18 2.89 7.26 -2.91 -0.02 2.87 16 31 H 0.12 1.93 7.14 -2.91 -0.02 1.91 16 32 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 33 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 34 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 35 H 0.14 1.65 6.98 -2.91 -0.02 1.63 16 Total: -1.00 -74.35 310.90 2.24 -72.11 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -0.23 Total: 23.11 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 3.86 Total: -3.36 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -3.34 Total: -104.62 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.07 Total: -31.39 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -74.35 2.24 -72.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427614306.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.316 kcal (2) G-P(sol) polarization free energy of solvation -74.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds