Wall clock time and date at job start Mon Mar 30 2020 01:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39657 * 120.14802 * 46.18985 * 3 2 1 5 5 C 1.37927 * 119.84266 * 179.97438 * 4 3 2 6 6 C 1.38384 * 120.15556 * 0.02562 * 5 4 3 7 7 C 1.38340 * 120.30234 * 0.25979 * 6 5 4 8 8 C 1.50700 * 119.92321 * 179.69841 * 7 6 5 9 9 C 1.50696 * 115.55469 * 210.03358 * 8 7 6 10 10 O 1.21273 * 120.00557 * 245.68788 * 9 8 7 11 11 N 1.34781 * 119.99512 * 65.68119 * 9 8 7 12 12 C 1.46505 * 119.99581 * 185.18818 * 11 9 8 13 13 C 1.50705 * 109.46756 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99871 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99974 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99583 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00123 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47242 * 60.00243 * 17 15 13 19 19 H 1.48499 * 109.47097 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46951 * 300.00220 * 17 15 13 21 21 C 1.53003 * 117.49745 * 64.36578 * 8 7 6 22 22 C 1.53006 * 117.49784 * 355.70712 * 8 7 6 23 23 C 1.37966 * 120.15285 * 359.44249 * 7 6 5 24 24 H 1.08001 * 120.07707 * 359.97438 * 4 3 2 25 25 H 1.08010 * 119.92180 * 179.97438 * 5 4 3 26 26 H 1.07997 * 119.84921 * 179.97438 * 6 5 4 27 27 H 0.96999 * 120.00094 * 5.18525 * 11 9 8 28 28 H 1.09001 * 109.47093 * 299.99618 * 12 11 9 29 29 H 1.09002 * 109.47215 * 60.00351 * 12 11 9 30 30 H 0.96998 * 119.99705 * 180.02562 * 16 15 13 31 31 H 1.09001 * 117.49896 * 359.97438 * 21 8 7 32 32 H 1.08998 * 117.49963 * 145.01783 * 21 8 7 33 33 H 1.08999 * 117.49694 * 214.97509 * 22 8 7 34 34 H 1.09000 * 117.49853 * 359.97438 * 22 8 7 35 35 H 1.07995 * 120.07873 * 180.28112 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -0.8351 -0.8715 5 6 4.6490 -0.8290 -0.8666 6 6 5.3374 0.0022 -0.0004 7 6 4.6485 0.8283 0.8696 8 6 5.4069 1.7250 1.8139 9 6 4.7169 2.0262 3.1194 10 8 4.3610 3.1581 3.3702 11 7 4.4952 1.0375 4.0081 12 6 3.7251 1.3057 5.2252 13 6 3.6218 0.0438 6.0426 14 1 4.0840 -0.8667 5.6908 15 6 2.9382 0.0520 7.2399 16 7 2.3758 1.1610 7.6684 17 14 2.8108 -1.5119 8.2534 18 1 4.1727 -1.9758 8.6212 19 1 2.0311 -1.2397 9.4876 20 1 2.1278 -2.5632 7.4575 21 6 6.2696 2.8293 1.1997 22 6 6.9319 1.6029 1.8326 23 6 3.2689 0.8368 0.8710 24 1 2.7337 -1.4846 -1.5477 25 1 5.1930 -1.4751 -1.5397 26 1 6.4174 0.0027 -0.0004 27 1 4.8455 0.1484 3.8419 28 1 4.2261 2.0775 5.8095 29 1 2.7254 1.6460 4.9550 30 1 1.8952 1.1669 8.5109 31 1 6.2891 2.9069 0.1127 32 1 6.3384 3.7734 1.7401 33 1 7.4361 1.7407 2.7891 34 1 7.3867 0.8736 1.1622 35 1 2.7324 1.4855 1.5475 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427633179.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:57 Heat of formation + Delta-G solvation = 15.458545 kcal Electronic energy + Delta-G solvation = -19436.016681 eV Core-core repulsion = 16398.721770 eV Total energy + Delta-G solvation = -3037.294911 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.53968 -39.98908 -37.98837 -37.05206 -36.15545 -34.35404 -32.26642 -31.82214 -29.57103 -26.24390 -24.88160 -24.25280 -23.23449 -22.99370 -21.06078 -19.73074 -18.45515 -17.67207 -17.36267 -17.08653 -16.46701 -16.26838 -15.96519 -15.52064 -15.17242 -15.00266 -14.71919 -14.29606 -14.10625 -13.94485 -13.82952 -13.67313 -13.51587 -13.01213 -12.72104 -12.70204 -12.36018 -12.27616 -12.15541 -11.67899 -11.54780 -11.50184 -10.82578 -10.74011 -9.93986 -9.87516 -9.61788 -8.32307 -6.49153 -0.20963 0.31654 1.39981 1.44396 1.51275 1.52467 1.61925 1.86650 2.26886 2.48003 2.67961 2.82308 3.02536 3.06922 3.48075 3.79940 3.85349 3.95229 4.05183 4.19683 4.25318 4.55867 4.70585 4.76810 4.86772 4.98563 5.03681 5.07156 5.18255 5.25301 5.35278 5.42462 5.44779 5.51635 5.64777 5.80885 5.90049 6.35076 6.61273 6.85912 7.19811 7.42765 8.79791 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.005584 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.863554 B = 5013.164664 C = 5976.442999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.273 3.727 3 C -0.042 4.042 4 C -0.062 4.062 5 C -0.098 4.098 6 C -0.068 4.068 7 C -0.043 4.043 8 C -0.144 4.144 9 C 0.531 3.469 10 O -0.602 6.602 11 N -0.697 5.697 12 C 0.268 3.732 13 C -0.555 4.555 14 H 0.085 0.915 15 C 0.003 3.997 16 N -0.932 5.932 17 Si 0.983 3.017 18 H -0.257 1.257 19 H -0.286 1.286 20 H -0.264 1.264 21 C -0.132 4.132 22 C -0.125 4.125 23 C -0.082 4.082 24 H 0.158 0.842 25 H 0.182 0.818 26 H 0.173 0.827 27 H 0.408 0.592 28 H -0.011 1.011 29 H -0.019 1.019 30 H 0.269 0.731 31 H 0.136 0.864 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.155 0.845 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.369 -7.537 -20.148 25.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.042 4.042 3 C -0.045 4.045 4 C -0.082 4.082 5 C -0.116 4.116 6 C -0.087 4.087 7 C -0.044 4.044 8 C -0.148 4.148 9 C 0.318 3.682 10 O -0.484 6.484 11 N -0.345 5.345 12 C 0.145 3.855 13 C -0.593 4.593 14 H 0.103 0.897 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.806 3.194 18 H -0.181 1.181 19 H -0.211 1.211 20 H -0.189 1.189 21 C -0.170 4.170 22 C -0.161 4.161 23 C -0.103 4.103 24 H 0.176 0.824 25 H 0.200 0.800 26 H 0.191 0.809 27 H 0.243 0.757 28 H 0.007 0.993 29 H -0.001 1.001 30 H 0.077 0.923 31 H 0.154 0.846 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.173 0.827 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.213 -6.675 -19.798 23.711 hybrid contribution -0.670 -0.068 1.429 1.580 sum 10.543 -6.743 -18.369 22.227 Atomic orbital electron populations 1.81230 1.13605 1.09873 1.09875 1.26218 0.93293 0.92360 0.92287 1.16031 0.82964 1.03051 1.02501 1.21541 0.95532 0.95506 0.95631 1.21544 0.92599 0.98595 0.98815 1.21661 1.02399 0.92259 0.92332 1.18589 0.91236 0.97479 0.97051 1.20055 0.95198 1.06365 0.93148 1.20272 0.78565 0.84131 0.85198 1.90636 1.54575 1.23775 1.79448 1.46126 1.53803 1.13157 1.21456 1.18532 0.88863 0.96344 0.81770 1.21567 1.35867 0.96137 1.05690 0.89742 1.26079 0.94201 1.00518 0.98813 1.70138 1.35265 1.29439 1.22208 0.85229 0.79048 0.77913 0.77209 1.18132 1.21102 1.18895 1.23200 0.98489 0.93018 1.02248 1.23442 0.87875 1.00750 1.04042 1.20861 0.94918 0.97454 0.97092 0.82434 0.80046 0.80943 0.75664 0.99323 1.00064 0.92264 0.84560 0.89807 0.88588 0.82713 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -16.49 18.54 19.00 0.35 -16.13 16 2 C 0.27 8.15 15.33 88.33 1.35 9.50 16 3 C -0.04 -0.99 5.73 -21.36 -0.12 -1.11 16 4 C -0.06 -0.85 9.76 22.54 0.22 -0.63 16 5 C -0.10 -0.83 10.03 22.23 0.22 -0.60 16 6 C -0.07 -0.77 9.35 22.33 0.21 -0.56 16 7 C -0.04 -0.93 5.48 -19.90 -0.11 -1.04 16 8 C -0.14 -3.74 2.36 -53.67 -0.13 -3.87 16 9 C 0.53 21.59 5.91 87.66 0.52 22.10 16 10 O -0.60 -30.76 16.71 -3.01 -0.05 -30.81 16 11 N -0.70 -30.07 5.55 -466.77 -2.59 -32.66 16 12 C 0.27 15.04 5.43 85.63 0.47 15.51 16 13 C -0.55 -30.67 9.28 25.60 0.24 -30.43 16 14 H 0.08 4.20 7.60 -2.91 -0.02 4.17 16 15 C 0.00 0.20 5.46 84.65 0.46 0.66 16 16 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 17 Si 0.98 42.97 29.54 68.60 2.03 45.00 16 18 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 19 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 21 C -0.13 -2.69 9.73 30.62 0.30 -2.40 16 22 C -0.12 -2.04 9.57 30.62 0.29 -1.75 16 23 C -0.08 -2.30 9.02 22.54 0.20 -2.10 16 24 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 25 H 0.18 0.01 8.06 -2.91 -0.02 -0.01 16 26 H 0.17 0.63 5.93 -2.91 -0.02 0.61 16 27 H 0.41 14.78 8.33 -92.71 -0.77 14.01 16 28 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 29 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 30 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 31 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.08 2.14 8.00 -2.39 -0.02 2.12 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.16 1.04 6.09 -2.39 -0.01 1.03 16 35 H 0.09 3.17 7.34 -2.91 -0.02 3.15 16 Total: -1.00 -81.90 317.66 4.51 -77.39 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.36 Total: 11.07 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 4.13 Total: 3.27 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -1.95 Total: -105.92 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.05 Total: -30.81 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -81.90 4.51 -77.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427633179.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.849 kcal (2) G-P(sol) polarization free energy of solvation -81.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds