Wall clock time and date at job start Mon Mar 30 2020 00:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.47006 * 2 1 4 4 C 1.46504 * 119.99999 * 274.94634 * 3 2 1 5 5 C 1.50697 * 109.47327 * 262.80068 * 4 3 2 6 6 H 1.08004 * 120.00332 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99954 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00417 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 119.99946 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46808 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46963 * 119.99953 * 9 7 5 12 12 H 1.48492 * 109.47291 * 240.00351 * 9 7 5 13 13 C 1.34772 * 120.00306 * 94.95253 * 3 2 1 14 14 O 1.21548 * 119.99712 * 3.22864 * 13 3 2 15 15 C 1.47882 * 120.00340 * 183.22738 * 13 3 2 16 16 N 1.32844 * 119.71888 * 353.93548 * 15 13 3 17 17 C 1.31368 * 121.68938 * 179.97438 * 16 15 13 18 18 C 1.39005 * 120.93207 * 0.02562 * 17 16 15 19 19 F 1.35096 * 120.32850 * 180.02562 * 18 17 16 20 20 C 1.38721 * 119.33944 * 0.02562 * 18 17 16 21 21 C 1.38828 * 118.45211 * 359.97438 * 20 18 17 22 22 F 1.35102 * 120.48658 * 179.97438 * 21 20 18 23 23 H 1.08999 * 109.47194 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46885 * 300.00322 * 1 2 3 25 25 H 1.09003 * 109.46703 * 59.99758 * 1 2 3 26 26 H 1.08996 * 109.46885 * 239.99678 * 2 1 3 27 27 H 1.08996 * 109.46938 * 119.99952 * 2 1 3 28 28 H 1.08998 * 109.47063 * 22.80081 * 4 3 2 29 29 H 1.08999 * 109.47446 * 142.80085 * 4 3 2 30 30 H 0.96999 * 120.00601 * 179.97438 * 8 7 5 31 31 H 1.07998 * 119.53907 * 180.28649 * 17 16 15 32 32 H 1.08004 * 120.77344 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1594 2.1083 -1.2640 5 6 3.5904 2.0323 -1.7303 6 1 4.3217 1.4958 -1.1440 7 6 3.9659 2.6470 -2.9060 8 7 3.0754 3.3000 -3.6203 9 14 5.7396 2.5523 -3.4844 10 1 6.5367 1.7649 -2.5097 11 1 5.7922 1.8925 -4.8138 12 1 6.2998 3.9234 -3.5898 13 6 2.3380 1.9830 1.1628 14 8 2.2772 1.3614 2.2055 15 6 2.7627 3.3995 1.1700 16 7 2.9439 4.0386 0.0196 17 6 3.3201 5.2966 -0.0191 18 6 3.5450 6.0115 1.1516 19 9 3.9311 7.3050 1.0975 20 6 3.3689 5.3836 2.3759 21 6 2.9708 4.0536 2.3859 22 9 2.7876 3.4018 3.5550 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.5083 1.6609 -2.0151 29 1 1.8803 3.1515 -1.1162 30 1 3.3396 3.7327 -4.4472 31 1 3.4526 5.7836 -0.9740 32 1 3.5375 5.9169 3.2998 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429595169.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:43 Heat of formation + Delta-G solvation = -67.005136 kcal Electronic energy + Delta-G solvation = -21062.728901 eV Core-core repulsion = 17467.628566 eV Total energy + Delta-G solvation = -3595.100335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.00820 -48.74692 -40.11808 -38.39480 -35.30827 -32.78923 -32.22741 -31.00758 -29.79183 -26.99731 -24.68555 -23.72344 -22.96862 -22.26112 -19.34426 -18.05424 -17.81590 -16.86984 -16.37652 -15.98752 -15.71973 -15.47113 -15.23586 -14.88428 -14.38976 -14.32156 -14.04727 -13.40402 -13.22482 -12.81578 -12.73039 -12.31680 -12.24642 -11.91582 -11.59621 -11.38787 -10.90656 -10.85060 -10.50027 -10.14361 -9.74015 -9.66571 -9.47321 -8.82734 -8.70439 -8.28412 -7.68130 -6.07425 -4.06814 0.64224 1.09569 3.10605 3.24118 3.33215 3.37759 3.58772 3.89689 4.03768 4.23525 4.38681 4.56344 4.72079 4.89002 5.24895 5.28619 5.52939 5.62618 5.76745 5.79524 5.86961 5.96497 6.23676 6.37283 6.60602 6.65437 6.82413 7.47331 7.67480 7.84655 7.98202 8.22579 8.25947 8.80844 8.97378 9.53168 11.00146 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.010132 C = 0.006372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.541078 B = 2762.827866 C = 4392.948544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.110 3.890 3 N -0.571 5.571 4 C 0.225 3.775 5 C -0.500 4.500 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.888 5.888 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.564 3.436 14 O -0.559 6.559 15 C 0.041 3.959 16 N -0.324 5.324 17 C 0.060 3.940 18 C 0.090 3.910 19 F -0.126 7.126 20 C -0.173 4.173 21 C 0.128 3.872 22 F -0.106 7.106 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.028 0.972 29 H 0.083 0.917 30 H 0.261 0.739 31 H 0.178 0.822 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 3.603 7.018 8.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.013 4.013 3 N -0.300 5.300 4 C 0.105 3.895 5 C -0.539 4.539 6 H 0.071 0.929 7 C -0.133 4.133 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.350 3.650 14 O -0.439 6.439 15 C -0.098 4.098 16 N -0.034 5.034 17 C -0.101 4.101 18 C 0.067 3.933 19 F -0.104 7.104 20 C -0.200 4.200 21 C 0.105 3.895 22 F -0.084 7.084 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.146 2.892 6.625 7.541 hybrid contribution 1.375 0.735 0.381 1.605 sum -0.770 3.627 7.006 7.927 Atomic orbital electron populations 1.22111 0.96522 1.01408 1.02088 1.21363 0.93650 0.83433 1.02869 1.48246 1.60105 1.13321 1.08304 1.20157 0.97152 0.94137 0.78011 1.21334 0.94459 1.32186 1.05960 0.92904 1.24768 0.96839 0.95282 0.96439 1.69928 1.33223 1.34685 1.14909 0.86666 0.85604 0.77838 0.78682 1.19981 1.21037 1.20971 1.17526 0.78544 0.84679 0.84243 1.90748 1.56287 1.64829 1.32075 1.21715 1.03352 0.96969 0.87796 1.69084 1.04346 1.06317 1.23613 1.23478 0.98086 0.90932 0.97618 1.18988 0.99628 0.79852 0.94797 1.91527 1.88132 1.33592 1.97161 1.21440 1.05336 0.94074 0.99179 1.18412 0.98730 0.89986 0.82383 1.91601 1.91809 1.80542 1.44410 0.92198 0.92916 0.92301 0.90299 0.90589 0.95385 0.90027 0.92961 0.80504 0.82436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 10.24 37.16 0.38 -2.15 16 2 C 0.11 2.01 6.17 -4.04 -0.02 1.98 16 3 N -0.57 -12.24 2.48 -176.17 -0.44 -12.67 16 4 C 0.22 5.28 4.79 -5.19 -0.02 5.25 16 5 C -0.50 -12.77 7.99 -34.44 -0.28 -13.05 16 6 H 0.05 1.42 7.81 -52.48 -0.41 1.01 16 7 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -23.48 13.29 55.43 0.74 -22.75 16 9 Si 0.88 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.56 12.33 7.58 -12.31 -0.09 12.23 16 14 O -0.56 -12.89 14.82 5.32 0.08 -12.81 16 15 C 0.04 0.82 6.63 -82.96 -0.55 0.27 16 16 N -0.32 -6.54 4.98 -9.70 -0.05 -6.59 16 17 C 0.06 1.02 11.17 -17.47 -0.20 0.82 16 18 C 0.09 1.31 7.35 -39.12 -0.29 1.02 16 19 F -0.13 -1.70 17.28 2.25 0.04 -1.66 16 20 C -0.17 -2.45 10.14 -39.18 -0.40 -2.84 16 21 C 0.13 2.22 7.31 -38.84 -0.28 1.94 16 22 F -0.11 -1.91 15.56 2.25 0.04 -1.87 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 27 H 0.08 1.39 7.24 -51.93 -0.38 1.01 16 28 H 0.03 0.69 8.02 -51.93 -0.42 0.28 16 29 H 0.08 1.98 5.21 -52.77 -0.27 1.70 16 30 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.18 2.82 8.06 -52.49 -0.42 2.39 16 32 H 0.16 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 289.34 15.07 4.36 4.36 Total: -1.00 -28.30 289.34 -5.25 -33.55 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -3.15 Total: -2.04 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -1.85 Total: 7.14 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.25 Total: -42.01 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.07 Total: -3.54 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.30 -5.25 -33.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429595169.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.451 kcal (2) G-P(sol) polarization free energy of solvation -28.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds