Wall clock time and date at job start Mon Mar 30 2020 01:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99872 * 2 1 4 4 H 1.48499 * 109.47336 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46847 * 300.00315 * 3 2 1 6 6 H 1.48497 * 109.46853 * 59.99875 * 3 2 1 7 7 C 1.37880 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00186 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99626 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46754 * 179.97438 * 9 7 2 11 11 C 1.35605 * 124.78230 * 264.99723 * 10 9 7 12 12 C 1.36659 * 109.69895 * 180.02562 * 11 10 9 13 13 C 1.46382 * 126.78666 * 179.97438 * 12 11 10 14 14 C 1.35448 * 119.99736 * 312.52673 * 13 12 11 15 15 C 1.41499 * 120.00566 * 348.89650 * 14 13 12 16 16 N 1.34773 * 120.00298 * 173.13478 * 15 14 13 17 17 O 1.21786 * 119.99557 * 353.12929 * 15 14 13 18 18 C 1.47515 * 106.42854 * 0.02562 * 12 11 10 19 19 C 1.39254 * 133.97106 * 180.02562 * 18 12 11 20 20 C 1.37766 * 119.67883 * 179.97438 * 19 18 12 21 21 C 1.38744 * 120.29707 * 359.97438 * 20 19 18 22 22 C 1.37773 * 120.62985 * 359.82411 * 21 20 19 23 23 C 1.37992 * 124.77993 * 84.99691 * 10 9 7 24 24 H 0.96992 * 120.00366 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47484 * 59.99937 * 9 7 2 26 26 H 1.09001 * 109.46694 * 299.99523 * 9 7 2 27 27 H 1.07999 * 125.14912 * 0.02751 * 11 10 9 28 28 H 1.07997 * 120.00125 * 132.52879 * 13 12 11 29 29 H 1.08008 * 119.99988 * 168.89376 * 14 13 12 30 30 H 0.97003 * 120.00130 * 359.97438 * 16 15 14 31 31 H 0.96996 * 120.00219 * 180.02562 * 16 15 14 32 32 H 1.08007 * 120.15923 * 359.93326 * 19 18 12 33 33 H 1.08002 * 119.85187 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.68292 * 180.02562 * 21 20 19 35 35 H 1.07997 * 120.03264 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6321 -4.2637 -1.1090 12 6 3.5128 -5.2468 -0.7547 13 6 4.2006 -6.1736 -1.6550 14 6 3.5046 -6.8249 -2.6173 15 6 2.0899 -6.7969 -2.6090 16 7 1.3994 -7.3253 -3.6388 17 8 1.4964 -6.2954 -1.6713 18 6 3.6322 -5.1902 0.7145 19 6 4.3603 -5.9158 1.6540 20 6 4.2483 -5.6054 2.9916 21 6 3.4155 -4.5751 3.4037 22 6 2.6927 -3.8464 2.4846 23 6 2.7899 -4.1466 1.1296 24 1 -0.4850 0.8399 -0.0004 25 1 0.6248 -2.5572 -0.8896 26 1 0.6242 -2.5567 0.8904 27 1 2.3243 -4.0392 -2.1196 28 1 5.2630 -6.3381 -1.5519 29 1 4.0295 -7.3656 -3.3911 30 1 1.8722 -7.7245 -4.3858 31 1 0.4297 -7.3058 -3.6333 32 1 5.0091 -6.7184 1.3357 33 1 4.8114 -6.1666 3.7227 34 1 3.3355 -4.3399 4.4548 35 1 2.0470 -3.0467 2.8161 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490549954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:37 Heat of formation + Delta-G solvation = 41.276282 kcal Electronic energy + Delta-G solvation = -19900.094364 eV Core-core repulsion = 16863.918994 eV Total energy + Delta-G solvation = -3036.175370 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.62716 -39.12120 -36.36234 -34.05040 -33.30192 -32.87667 -30.80331 -29.50195 -28.06508 -26.59708 -24.00854 -22.84066 -21.81794 -20.71662 -19.95197 -18.48832 -16.95049 -16.78298 -16.59779 -15.76309 -15.43441 -14.84369 -14.43775 -14.18512 -13.97630 -13.47982 -13.34217 -13.05978 -13.04577 -12.34045 -12.06935 -11.84184 -11.52165 -11.23286 -11.12756 -10.82539 -10.72718 -10.38524 -10.19030 -9.90340 -9.42479 -9.32938 -9.21657 -8.67570 -8.55682 -7.38069 -6.61067 -6.23647 -4.36270 1.28767 1.91968 2.36753 3.18218 3.26128 3.31493 3.57071 3.81420 3.91669 4.01088 4.28947 4.60490 5.06217 5.28966 5.33651 5.36264 5.56569 5.59959 5.68963 5.85596 6.09208 6.22070 6.28751 6.46382 6.51899 6.62883 6.71730 6.90044 7.02883 7.06439 7.12409 7.20144 7.47229 7.57953 7.65650 7.67705 7.87409 8.13932 8.20297 8.69045 8.72398 9.31386 10.79930 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014933 B = 0.006596 C = 0.005086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.541223 B = 4243.929258 C = 5503.638296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.233 3.767 10 N -0.438 5.438 11 C 0.168 3.832 12 C -0.228 4.228 13 C 0.075 3.925 14 C -0.283 4.283 15 C 0.547 3.453 16 N -0.866 5.866 17 O -0.529 6.529 18 C -0.077 4.077 19 C -0.093 4.093 20 C -0.150 4.150 21 C -0.127 4.127 22 C -0.103 4.103 23 C 0.096 3.904 24 H 0.267 0.733 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.154 0.846 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.394 0.606 31 H 0.395 0.605 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.657 -12.742 -4.037 14.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.084 0.916 9 C 0.115 3.885 10 N -0.112 5.112 11 C 0.032 3.968 12 C -0.234 4.234 13 C 0.054 3.946 14 C -0.305 4.305 15 C 0.337 3.663 16 N -0.430 5.430 17 O -0.407 6.407 18 C -0.081 4.081 19 C -0.112 4.112 20 C -0.170 4.170 21 C -0.147 4.147 22 C -0.123 4.123 23 C -0.010 4.010 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.171 0.829 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.221 0.779 31 H 0.225 0.775 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.012 -11.940 -3.319 13.774 hybrid contribution 0.099 0.717 -0.613 0.949 sum 6.112 -11.222 -3.932 13.370 Atomic orbital electron populations 1.69938 1.06099 1.27552 1.49201 1.24957 0.94934 0.99536 0.94370 0.86329 0.80115 0.82589 0.77859 1.19478 1.20661 1.20600 1.21412 0.93786 0.89834 1.52896 0.91599 1.19750 0.87142 0.81956 0.99683 1.44540 1.35342 1.27729 1.03586 1.21712 0.91785 0.91853 0.91457 1.18554 1.09445 1.04220 0.91210 1.21656 0.97736 0.86759 0.88407 1.21717 0.93826 1.10073 1.04880 1.17235 0.89097 0.77861 0.82109 1.43973 1.10690 1.64632 1.23656 1.91036 1.71670 1.44206 1.33798 1.18902 0.99649 0.97420 0.92172 1.20213 0.99550 0.99334 0.92089 1.20679 1.01555 0.99603 0.95118 1.20598 0.98678 0.97125 0.98293 1.20167 1.01537 1.00790 0.89806 1.18208 0.97924 0.96085 0.88820 0.92317 0.93464 0.93623 0.82895 0.86028 0.86151 0.77870 0.77530 0.87194 0.87033 0.86675 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.54 -14.89 9.39 -34.44 -0.32 -15.22 16 8 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 9 C 0.23 6.06 5.71 -5.19 -0.03 6.03 16 10 N -0.44 -10.33 2.73 -115.38 -0.31 -10.65 16 11 C 0.17 3.58 8.34 -16.45 -0.14 3.44 16 12 C -0.23 -4.38 4.63 -103.41 -0.48 -4.86 16 13 C 0.08 1.10 10.16 -37.30 -0.38 0.72 16 14 C -0.28 -3.66 9.81 -39.34 -0.39 -4.05 16 15 C 0.55 8.22 7.46 -15.02 -0.11 8.10 16 16 N -0.87 -9.02 8.86 29.07 0.26 -8.76 16 17 O -0.53 -10.64 13.18 5.11 0.07 -10.57 16 18 C -0.08 -1.57 6.36 -104.93 -0.67 -2.24 16 19 C -0.09 -1.63 10.09 -39.38 -0.40 -2.03 16 20 C -0.15 -2.46 10.03 -39.57 -0.40 -2.85 16 21 C -0.13 -2.22 10.01 -39.56 -0.40 -2.62 16 22 C -0.10 -2.13 9.97 -39.42 -0.39 -2.53 16 23 C 0.10 2.17 6.79 -83.95 -0.57 1.60 16 24 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.05 1.27 8.11 -51.93 -0.42 0.85 16 26 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.15 3.06 7.89 -52.49 -0.41 2.65 16 28 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 30 H 0.39 2.70 8.79 -40.82 -0.36 2.34 16 31 H 0.40 3.91 8.93 -40.82 -0.36 3.55 16 32 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 33 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.12 2.51 8.06 -52.49 -0.42 2.08 16 LS Contribution 309.45 15.07 4.66 4.66 Total: -1.00 -32.54 309.45 -8.44 -40.98 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -4.06 Total: 7.66 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -4.76 Total: -14.80 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.68 Total: -44.01 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.07 Total: -10.57 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.54 -8.44 -40.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490549954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.252 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds