Wall clock time and date at job start Mon Mar 30 2020 01:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99872 * 2 1 4 4 H 1.48499 * 109.47336 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46847 * 300.00315 * 3 2 1 6 6 H 1.48497 * 109.46853 * 59.99875 * 3 2 1 7 7 C 1.37880 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00186 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99626 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46754 * 179.97438 * 9 7 2 11 11 C 1.35605 * 124.78230 * 264.99723 * 10 9 7 12 12 C 1.36659 * 109.69895 * 180.02562 * 11 10 9 13 13 C 1.46382 * 126.78666 * 179.97438 * 12 11 10 14 14 C 1.35448 * 119.99736 * 312.52673 * 13 12 11 15 15 C 1.41499 * 120.00566 * 348.89650 * 14 13 12 16 16 N 1.34773 * 120.00298 * 173.13478 * 15 14 13 17 17 O 1.21786 * 119.99557 * 353.12929 * 15 14 13 18 18 C 1.47515 * 106.42854 * 0.02562 * 12 11 10 19 19 C 1.39254 * 133.97106 * 180.02562 * 18 12 11 20 20 C 1.37766 * 119.67883 * 179.97438 * 19 18 12 21 21 C 1.38744 * 120.29707 * 359.97438 * 20 19 18 22 22 C 1.37773 * 120.62985 * 359.82411 * 21 20 19 23 23 C 1.37992 * 124.77993 * 84.99691 * 10 9 7 24 24 H 0.96992 * 120.00366 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47484 * 59.99937 * 9 7 2 26 26 H 1.09001 * 109.46694 * 299.99523 * 9 7 2 27 27 H 1.07999 * 125.14912 * 0.02751 * 11 10 9 28 28 H 1.07997 * 120.00125 * 132.52879 * 13 12 11 29 29 H 1.08008 * 119.99988 * 168.89376 * 14 13 12 30 30 H 0.97003 * 120.00130 * 359.97438 * 16 15 14 31 31 H 0.96996 * 120.00219 * 180.02562 * 16 15 14 32 32 H 1.08007 * 120.15923 * 359.93326 * 19 18 12 33 33 H 1.08002 * 119.85187 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.68292 * 180.02562 * 21 20 19 35 35 H 1.07997 * 120.03264 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6321 -4.2637 -1.1090 12 6 3.5128 -5.2468 -0.7547 13 6 4.2006 -6.1736 -1.6550 14 6 3.5046 -6.8249 -2.6173 15 6 2.0899 -6.7969 -2.6090 16 7 1.3994 -7.3253 -3.6388 17 8 1.4964 -6.2954 -1.6713 18 6 3.6322 -5.1902 0.7145 19 6 4.3603 -5.9158 1.6540 20 6 4.2483 -5.6054 2.9916 21 6 3.4155 -4.5751 3.4037 22 6 2.6927 -3.8464 2.4846 23 6 2.7899 -4.1466 1.1296 24 1 -0.4850 0.8399 -0.0004 25 1 0.6248 -2.5572 -0.8896 26 1 0.6242 -2.5567 0.8904 27 1 2.3243 -4.0392 -2.1196 28 1 5.2630 -6.3381 -1.5519 29 1 4.0295 -7.3656 -3.3911 30 1 1.8722 -7.7245 -4.3858 31 1 0.4297 -7.3058 -3.6333 32 1 5.0091 -6.7184 1.3357 33 1 4.8114 -6.1666 3.7227 34 1 3.3355 -4.3399 4.4548 35 1 2.0470 -3.0467 2.8161 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490549954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:37 Heat of formation + Delta-G solvation = 19.460893 kcal Electronic energy + Delta-G solvation = -19901.040351 eV Core-core repulsion = 16863.918994 eV Total energy + Delta-G solvation = -3037.121356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.12714 -40.35253 -37.84158 -35.70774 -34.59693 -34.45091 -32.27830 -31.11464 -29.59599 -28.31090 -25.61372 -24.39829 -23.31155 -22.16005 -21.34749 -19.74648 -18.88325 -18.16981 -17.84481 -17.22522 -17.00093 -16.24509 -16.17402 -15.67924 -15.33240 -14.92153 -14.66946 -14.64774 -14.30418 -14.16544 -13.66120 -13.34749 -13.24443 -12.95246 -12.73269 -12.49095 -12.33204 -12.30471 -11.73052 -11.56031 -10.95689 -10.80377 -10.58105 -10.37117 -9.90431 -8.92247 -8.44633 -7.98866 -6.58030 0.06209 0.52695 0.92812 1.32646 1.33414 1.47481 2.09288 2.21355 2.37139 2.65854 2.90570 3.05121 3.15099 3.91042 3.98119 4.09952 4.30707 4.38415 4.44612 4.51679 4.73196 4.76334 4.83550 4.90375 4.93611 5.09301 5.22221 5.46121 5.48856 5.57512 5.72359 5.75629 5.79008 6.04016 6.10346 6.16817 6.39214 6.56271 6.67040 6.76318 7.15029 7.63837 8.68569 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014933 B = 0.006596 C = 0.005086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.541223 B = 4243.929258 C = 5503.638296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.018 3.982 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.555 4.555 8 H 0.054 0.946 9 C 0.254 3.746 10 N -0.461 5.461 11 C 0.125 3.875 12 C -0.203 4.203 13 C 0.049 3.951 14 C -0.253 4.253 15 C 0.532 3.468 16 N -0.843 5.843 17 O -0.589 6.589 18 C -0.102 4.102 19 C -0.087 4.087 20 C -0.145 4.145 21 C -0.114 4.114 22 C -0.143 4.143 23 C 0.059 3.941 24 H 0.273 0.727 25 H 0.023 0.977 26 H 0.016 0.984 27 H 0.148 0.852 28 H 0.163 0.837 29 H 0.173 0.827 30 H 0.415 0.585 31 H 0.399 0.601 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.146 0.854 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.606 -14.729 -4.484 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.592 4.592 8 H 0.072 0.928 9 C 0.134 3.866 10 N -0.138 5.138 11 C -0.007 4.007 12 C -0.210 4.210 13 C 0.029 3.971 14 C -0.274 4.274 15 C 0.322 3.678 16 N -0.407 5.407 17 O -0.471 6.471 18 C -0.107 4.107 19 C -0.105 4.105 20 C -0.164 4.164 21 C -0.133 4.133 22 C -0.164 4.164 23 C -0.047 4.047 24 H 0.082 0.918 25 H 0.041 0.959 26 H 0.034 0.966 27 H 0.165 0.835 28 H 0.181 0.819 29 H 0.190 0.810 30 H 0.247 0.753 31 H 0.229 0.771 32 H 0.166 0.834 33 H 0.175 0.825 34 H 0.164 0.836 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.975 -13.989 -3.843 17.059 hybrid contribution -0.844 1.118 -0.518 1.494 sum 8.130 -12.870 -4.361 15.836 Atomic orbital electron populations 1.70044 1.07629 1.28844 1.49554 1.25877 0.95819 1.03138 0.93462 0.85237 0.78529 0.77828 0.78490 1.19345 1.19355 1.19591 1.21531 0.93240 0.90983 1.53491 0.92773 1.19170 0.87361 0.83194 0.96922 1.44305 1.36357 1.28078 1.05028 1.21811 0.94299 0.93754 0.90850 1.19038 1.07267 1.03104 0.91565 1.21981 0.99609 0.87141 0.88369 1.22144 0.92612 1.08307 1.04345 1.17821 0.90385 0.77453 0.82115 1.43779 1.11047 1.62778 1.23061 1.91052 1.72929 1.46694 1.36385 1.19345 1.00282 0.97661 0.93392 1.20704 0.98658 0.99157 0.92004 1.21193 1.00688 0.98801 0.95722 1.21019 0.96994 0.96178 0.99109 1.20293 1.03624 1.02179 0.90274 1.18725 0.99251 0.97612 0.89126 0.91765 0.95886 0.96586 0.83479 0.81926 0.80999 0.75338 0.77121 0.83447 0.82503 0.83643 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.86 13.29 21.45 0.28 -54.58 16 2 C 0.02 1.00 5.46 84.66 0.46 1.47 16 3 Si 0.98 44.37 29.54 68.60 2.03 46.39 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -32.59 9.39 25.60 0.24 -32.35 16 8 H 0.05 3.24 7.81 -2.91 -0.02 3.21 16 9 C 0.25 14.52 5.71 85.63 0.49 15.01 16 10 N -0.46 -23.67 2.73 -518.94 -1.42 -25.09 16 11 C 0.13 5.70 8.34 83.74 0.70 6.40 16 12 C -0.20 -7.85 4.63 -19.08 -0.09 -7.94 16 13 C 0.05 1.31 10.16 23.75 0.24 1.55 16 14 C -0.25 -5.66 9.81 22.43 0.22 -5.44 16 15 C 0.53 15.28 7.46 85.05 0.63 15.91 16 16 N -0.84 -15.80 8.86 -180.12 -1.60 -17.40 16 17 O -0.59 -24.34 13.18 -4.62 -0.06 -24.40 16 18 C -0.10 -4.19 6.36 -20.06 -0.13 -4.32 16 19 C -0.09 -2.80 10.09 22.40 0.23 -2.58 16 20 C -0.15 -4.27 10.03 22.28 0.22 -4.05 16 21 C -0.11 -3.86 10.01 22.28 0.22 -3.64 16 22 C -0.14 -6.28 9.97 22.37 0.22 -6.06 16 23 C 0.06 2.81 6.79 38.91 0.26 3.07 16 24 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 25 H 0.02 1.38 8.11 -2.39 -0.02 1.36 16 26 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.15 6.46 7.89 -2.91 -0.02 6.43 16 28 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 29 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 30 H 0.42 4.23 8.79 -92.71 -0.81 3.41 16 31 H 0.40 7.43 8.93 -92.71 -0.83 6.60 16 32 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 33 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 34 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 35 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -77.73 309.45 2.65 -75.08 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -0.52 Total: 22.97 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 3.93 Total: -22.97 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -2.73 Total: -97.06 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.06 Total: -24.40 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -77.73 2.65 -75.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490549954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.538 kcal (2) G-P(sol) polarization free energy of solvation -77.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds