Wall clock time and date at job start Mon Mar 30 2020 01:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39779 * 119.97448 * 222.70011 * 3 2 1 5 5 C 1.37114 * 120.01503 * 179.97438 * 4 3 2 6 6 C 1.39932 * 119.98052 * 0.02562 * 5 4 3 7 7 C 1.47176 * 120.01938 * 179.97438 * 6 5 4 8 8 C 1.34808 * 120.00123 * 180.02562 * 7 6 5 9 9 C 1.46526 * 120.00078 * 180.02562 * 8 7 6 10 10 O 1.21689 * 119.99884 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99958 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47237 * 179.72043 * 12 11 9 14 14 C 1.50696 * 109.46969 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00408 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99883 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99834 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99926 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47025 * 59.99930 * 18 16 14 20 20 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47148 * 300.00133 * 18 16 14 22 22 C 1.39939 * 119.96512 * 0.25168 * 6 5 4 23 23 C 1.37114 * 119.97420 * 359.46352 * 22 6 5 24 24 H 1.07994 * 119.99197 * 359.97438 * 4 3 2 25 25 H 1.08004 * 120.00854 * 180.02562 * 5 4 3 26 26 H 1.07998 * 119.99578 * 359.97438 * 7 6 5 27 27 H 1.08004 * 119.99844 * 359.97438 * 8 7 6 28 28 H 0.97005 * 120.00161 * 359.71951 * 11 9 8 29 29 H 1.09001 * 109.46512 * 299.72412 * 12 11 9 30 30 H 1.08998 * 109.47174 * 59.71534 * 12 11 9 31 31 H 1.09000 * 109.46986 * 299.99958 * 13 12 11 32 32 H 1.09002 * 109.46857 * 60.00093 * 13 12 11 33 33 H 0.96999 * 119.99905 * 179.97438 * 17 16 14 34 34 H 1.08000 * 120.01125 * 179.74722 * 22 6 5 35 35 H 1.07998 * 119.98715 * 180.25507 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2659 0.8908 0.8211 5 6 4.6371 0.8918 0.8222 6 6 5.3376 0.0017 0.0005 7 6 6.8093 0.0024 0.0006 8 6 7.4838 -0.8549 -0.7915 9 6 8.9491 -0.8546 -0.7911 10 8 9.5571 -0.0802 -0.0760 11 7 9.6234 -1.7121 -1.5826 12 6 11.0884 -1.7122 -1.5817 13 6 11.5990 -2.7766 -2.5549 14 6 13.1059 -2.7762 -2.5545 15 1 13.6456 -2.0861 -1.9229 16 6 13.7958 -3.6569 -3.3604 17 7 13.1387 -4.4969 -4.1299 18 14 15.6638 -3.6569 -3.3593 19 1 16.1580 -3.9594 -1.9920 20 1 16.1594 -4.6900 -4.3040 21 1 16.1591 -2.3218 -3.7806 22 6 4.6380 -0.8852 -0.8255 23 6 3.2669 -0.8888 -0.8210 24 1 2.7251 1.5780 1.4549 25 1 5.1763 1.5793 1.4570 26 1 7.3489 0.6903 0.6346 27 1 6.9441 -1.5426 -1.4259 28 1 9.1387 -2.3322 -2.1496 29 1 11.4519 -0.7323 -1.8914 30 1 11.4512 -1.9336 -0.5780 31 1 11.2354 -3.7564 -2.2452 32 1 11.2362 -2.5551 -3.5587 33 1 13.6240 -5.1163 -4.6971 34 1 5.1779 -1.5697 -1.4630 35 1 2.7268 -1.5760 -1.4553 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492424537.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:40 Heat of formation + Delta-G solvation = -0.145679 kcal Electronic energy + Delta-G solvation = -17816.697161 eV Core-core repulsion = 14778.725599 eV Total energy + Delta-G solvation = -3037.971561 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.80128 -40.27611 -37.67312 -36.61244 -35.02297 -34.78755 -32.22535 -31.83582 -30.72244 -27.17837 -25.62279 -23.76163 -23.18588 -22.29473 -20.55454 -19.90510 -18.67450 -18.18654 -16.98842 -16.57990 -16.37795 -16.34056 -15.99632 -15.53318 -15.12619 -14.81249 -14.77944 -14.47544 -14.33146 -14.15934 -13.84867 -13.58603 -13.20688 -13.11674 -12.91553 -12.64137 -12.52472 -12.21699 -11.89014 -11.65081 -11.45991 -11.28928 -10.91434 -10.58276 -10.02486 -10.01456 -9.26467 -8.22480 -6.32617 -0.76294 0.44831 0.69252 1.43454 1.45364 1.53358 1.59204 1.94978 2.31339 2.41567 2.49465 2.83705 2.97857 3.12299 3.63799 3.80388 3.95198 4.17459 4.26672 4.34821 4.46088 4.52206 4.55063 4.77185 4.88475 5.00171 5.12792 5.16292 5.32056 5.33564 5.41148 5.53493 5.61077 5.63910 5.81189 5.81587 6.18400 6.41592 6.69278 6.80634 7.31784 7.36508 8.88981 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.050983 B = 0.002337 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.066143 B =11978.698780 C =12507.310854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.279 3.721 3 C -0.035 4.035 4 C -0.066 4.066 5 C -0.098 4.098 6 C -0.045 4.045 7 C -0.025 4.025 8 C -0.196 4.196 9 C 0.531 3.469 10 O -0.598 6.598 11 N -0.712 5.712 12 C 0.139 3.861 13 C 0.022 3.978 14 C -0.548 4.548 15 H 0.058 0.942 16 C 0.007 3.993 17 N -0.925 5.925 18 Si 0.964 3.036 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.269 1.269 22 C -0.106 4.106 23 C -0.066 4.066 24 H 0.153 0.847 25 H 0.156 0.844 26 H 0.131 0.869 27 H 0.165 0.835 28 H 0.413 0.587 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.266 0.734 34 H 0.157 0.843 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.600 7.968 7.301 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.035 4.035 3 C -0.039 4.039 4 C -0.086 4.086 5 C -0.115 4.115 6 C -0.046 4.046 7 C -0.045 4.045 8 C -0.216 4.216 9 C 0.322 3.678 10 O -0.482 6.482 11 N -0.361 5.361 12 C 0.015 3.985 13 C -0.015 4.015 14 C -0.587 4.587 15 H 0.077 0.923 16 C -0.192 4.192 17 N -0.565 5.565 18 Si 0.788 3.212 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.194 1.194 22 C -0.124 4.124 23 C -0.086 4.086 24 H 0.171 0.829 25 H 0.174 0.826 26 H 0.149 0.851 27 H 0.182 0.818 28 H 0.249 0.751 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.074 0.926 34 H 0.174 0.826 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.895 8.346 7.646 23.764 hybrid contribution 1.311 -0.511 -0.462 1.481 sum -19.584 7.834 7.184 22.283 Atomic orbital electron populations 1.81300 1.13563 1.09645 1.09805 1.25976 0.92851 0.92362 0.92352 1.16263 0.83205 1.01685 1.02707 1.21184 0.94145 0.96708 0.96610 1.21411 0.93653 0.98216 0.98258 1.19301 0.91846 0.96551 0.96862 1.22415 0.92310 0.95213 0.94599 1.23077 0.90858 1.03648 1.04020 1.19074 0.89676 0.79842 0.79216 1.90765 1.71835 1.41998 1.43562 1.46063 1.07699 1.38488 1.43875 1.21224 0.78656 0.99252 0.99339 1.19135 0.95347 0.93253 0.93788 1.21456 0.92728 1.19638 1.24833 0.92335 1.25862 1.03726 0.94832 0.94775 1.70041 1.37614 1.22099 1.26738 0.85517 0.79317 0.78084 0.78245 1.19394 1.20647 1.19379 1.21490 0.93762 0.98578 0.98526 1.21180 0.94143 0.96699 0.96608 0.82883 0.82594 0.85098 0.81812 0.75067 0.93542 0.93559 0.97187 0.97179 0.92553 0.82593 0.83003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.91 18.54 19.00 0.35 -9.56 16 2 C 0.28 4.30 15.32 88.33 1.35 5.65 16 3 C -0.04 -0.37 5.74 -21.29 -0.12 -0.50 16 4 C -0.07 -0.55 9.71 22.38 0.22 -0.33 16 5 C -0.10 -0.87 9.75 22.42 0.22 -0.66 16 6 C -0.04 -0.53 5.87 -20.11 -0.12 -0.64 16 7 C -0.03 -0.42 9.45 23.83 0.23 -0.20 16 8 C -0.20 -3.80 9.41 23.64 0.22 -3.58 16 9 C 0.53 16.44 7.75 86.40 0.67 17.11 16 10 O -0.60 -23.51 16.23 -4.31 -0.07 -23.58 16 11 N -0.71 -23.15 5.55 -467.24 -2.59 -25.74 16 12 C 0.14 5.81 5.61 86.38 0.48 6.30 16 13 C 0.02 1.09 5.09 29.85 0.15 1.24 16 14 C -0.55 -30.15 9.11 25.60 0.23 -29.92 16 15 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 16 C 0.01 0.38 5.46 84.66 0.46 0.85 16 17 N -0.93 -53.44 13.29 21.45 0.28 -53.15 16 18 Si 0.96 43.01 29.54 68.60 2.03 45.04 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 C -0.11 -0.99 9.37 22.42 0.21 -0.78 16 23 C -0.07 -0.58 9.71 22.38 0.22 -0.36 16 24 H 0.15 0.70 8.06 -2.91 -0.02 0.67 16 25 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 26 H 0.13 2.44 7.52 -2.91 -0.02 2.42 16 27 H 0.16 1.96 6.06 -2.91 -0.02 1.95 16 28 H 0.41 11.02 8.45 -92.70 -0.78 10.23 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 34 H 0.16 0.93 6.15 -2.91 -0.02 0.91 16 35 H 0.15 0.82 8.06 -2.91 -0.02 0.80 16 Total: -1.00 -71.31 322.79 4.76 -66.55 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 0.34 Total: 6.27 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 4.43 Total: -5.83 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -1.96 Total: -88.45 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.07 Total: -23.58 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -71.31 4.76 -66.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492424537.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.400 kcal (2) G-P(sol) polarization free energy of solvation -71.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds