Wall clock time and date at job start Mon Mar 30 2020 01:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39772 * 119.97999 * 169.90867 * 3 2 1 5 5 C 1.37101 * 120.02121 * 179.97438 * 4 3 2 6 6 C 1.39937 * 119.98069 * 0.02562 * 5 4 3 7 7 C 1.47170 * 120.02055 * 179.97438 * 6 5 4 8 8 C 1.34808 * 120.00124 * 136.33867 * 7 6 5 9 9 C 1.46530 * 119.99932 * 349.02594 * 8 7 6 10 10 O 1.21678 * 119.99576 * 353.22403 * 9 8 7 11 11 N 1.34774 * 119.99738 * 172.94307 * 9 8 7 12 12 C 1.46497 * 119.99818 * 180.27611 * 11 9 8 13 13 C 1.52999 * 109.47008 * 180.02562 * 12 11 9 14 14 C 1.50705 * 109.47100 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99881 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00218 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99786 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00006 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47127 * 59.99816 * 18 16 14 20 20 H 1.48500 * 109.46949 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46944 * 299.99511 * 18 16 14 22 22 C 1.39934 * 119.95907 * 0.25531 * 6 5 4 23 23 C 1.37109 * 119.98022 * 359.45930 * 22 6 5 24 24 H 1.08008 * 119.98990 * 359.97438 * 4 3 2 25 25 H 1.08007 * 120.01146 * 180.02562 * 5 4 3 26 26 H 1.08007 * 120.00101 * 316.33372 * 7 6 5 27 27 H 1.08005 * 120.00052 * 169.03513 * 8 7 6 28 28 H 0.97006 * 119.99915 * 0.28210 * 11 9 8 29 29 H 1.09001 * 109.47371 * 300.00160 * 12 11 9 30 30 H 1.09003 * 109.46913 * 60.00609 * 12 11 9 31 31 H 1.08996 * 109.47651 * 299.99849 * 13 12 11 32 32 H 1.08999 * 109.47417 * 60.00569 * 13 12 11 33 33 H 0.96993 * 119.99825 * 179.97438 * 17 16 14 34 34 H 1.08005 * 120.00645 * 179.74891 * 22 6 5 35 35 H 1.08003 * 119.98888 * 180.25596 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2660 1.1929 -0.2121 5 6 4.6370 1.1946 -0.2118 6 6 5.3377 0.0020 0.0005 7 6 6.8094 0.0027 0.0005 8 6 7.4838 -0.6872 0.9420 9 6 6.7715 -1.2362 2.0989 10 8 5.5981 -0.9666 2.2749 11 7 7.4146 -2.0443 2.9648 12 6 6.7008 -2.5980 4.1181 13 6 7.6531 -3.4742 4.9345 14 6 6.9187 -4.0443 6.1206 15 1 5.8771 -3.8053 6.2768 16 6 7.5768 -4.8703 7.0071 17 7 8.8453 -5.1610 6.8172 18 14 6.6663 -5.5775 8.4769 19 1 5.5230 -6.3982 8.0028 20 1 7.5905 -6.4278 9.2693 21 1 6.1614 -4.4692 9.3265 22 6 4.6381 -1.1922 0.2070 23 6 3.2671 -1.1910 0.2121 24 1 2.7250 2.1132 -0.3764 25 1 5.1761 2.1161 -0.3753 26 1 7.3492 0.5560 -0.7539 27 1 8.5491 -0.8352 0.8437 28 1 8.3501 -2.2592 2.8244 29 1 6.3317 -1.7840 4.7421 30 1 5.8607 -3.1995 3.7709 31 1 8.0226 -4.2882 4.3110 32 1 8.4929 -2.8724 5.2818 33 1 9.3083 -5.7417 7.4410 34 1 5.1782 -2.1138 0.3668 35 1 2.7270 -2.1119 0.3755 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492424538.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:42 Heat of formation + Delta-G solvation = 13.951755 kcal Electronic energy + Delta-G solvation = -18720.115882 eV Core-core repulsion = 15682.755631 eV Total energy + Delta-G solvation = -3037.360251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.08260 -39.85892 -37.61757 -36.55909 -34.83301 -34.66118 -32.04041 -31.87476 -30.66750 -27.10610 -25.41801 -23.61465 -23.36829 -22.36598 -20.46039 -19.88037 -18.64274 -18.13673 -16.83308 -16.57035 -16.47488 -16.20768 -15.67775 -15.46466 -15.16613 -14.78912 -14.70886 -14.42453 -14.26074 -14.15237 -13.85616 -13.64216 -13.23210 -13.12442 -12.91197 -12.54539 -12.40688 -12.19973 -12.01380 -11.63141 -11.45943 -10.92314 -10.64239 -10.59651 -10.03165 -9.65232 -9.09871 -8.24198 -6.34342 -0.50649 0.53957 0.68840 1.41493 1.43136 1.51204 1.57515 2.00053 2.34996 2.46245 2.56655 2.87866 3.02396 3.10598 3.80229 3.95115 4.01596 4.08352 4.42565 4.53350 4.53652 4.58487 4.68371 4.87002 4.89678 5.07966 5.13770 5.27119 5.35357 5.41739 5.46662 5.54577 5.60847 5.69549 5.81451 5.95728 6.17608 6.40654 6.77105 6.79890 7.35040 7.42206 8.87316 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.003567 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.469253 B = 7846.904892 C = 8967.344747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.280 3.720 3 C -0.044 4.044 4 C -0.076 4.076 5 C -0.101 4.101 6 C -0.042 4.042 7 C -0.023 4.023 8 C -0.203 4.203 9 C 0.520 3.480 10 O -0.571 6.571 11 N -0.715 5.715 12 C 0.144 3.856 13 C 0.023 3.977 14 C -0.548 4.548 15 H 0.057 0.943 16 C 0.009 3.991 17 N -0.926 5.926 18 Si 0.961 3.039 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.269 1.269 22 C -0.056 4.056 23 C -0.092 4.092 24 H 0.153 0.847 25 H 0.167 0.833 26 H 0.188 0.812 27 H 0.169 0.831 28 H 0.410 0.590 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.266 0.734 34 H 0.113 0.887 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 12.574 -18.025 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.034 4.034 3 C -0.048 4.048 4 C -0.096 4.096 5 C -0.119 4.119 6 C -0.043 4.043 7 C -0.042 4.042 8 C -0.224 4.224 9 C 0.310 3.690 10 O -0.453 6.453 11 N -0.365 5.365 12 C 0.020 3.980 13 C -0.015 4.015 14 C -0.587 4.587 15 H 0.075 0.925 16 C -0.190 4.190 17 N -0.565 5.565 18 Si 0.786 3.214 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.194 1.194 22 C -0.074 4.074 23 C -0.113 4.113 24 H 0.171 0.829 25 H 0.185 0.815 26 H 0.205 0.795 27 H 0.186 0.814 28 H 0.245 0.755 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.131 0.869 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.913 12.635 -17.792 22.015 hybrid contribution 0.416 -1.033 1.268 1.688 sum -2.496 11.601 -16.524 20.344 Atomic orbital electron populations 1.81238 1.13314 1.09050 1.11128 1.26063 0.92956 0.92240 0.92109 1.16148 0.83140 0.96294 1.09189 1.21139 0.94781 0.96368 0.97315 1.21342 0.93308 0.98178 0.99053 1.19501 0.94452 0.93627 0.96753 1.22803 0.91255 0.93162 0.96978 1.23241 1.02365 1.02376 0.94393 1.19326 0.86837 0.78416 0.84399 1.90849 1.17283 1.60958 1.76226 1.46168 1.15529 1.48491 1.26267 1.21122 0.95123 0.95746 0.86041 1.19120 0.94421 0.93946 0.93966 1.21464 0.97573 1.29678 1.09961 0.92509 1.25836 0.95712 0.96531 1.00950 1.70040 1.10677 1.37342 1.38464 0.85554 0.78431 0.78511 0.78900 1.19446 1.20527 1.19433 1.20924 0.93347 0.98300 0.94873 1.20895 0.94588 0.96967 0.98835 0.82946 0.81523 0.79543 0.81375 0.75452 0.93951 0.93671 0.97320 0.97411 0.92529 0.86892 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.93 18.54 19.01 0.35 -13.58 16 2 C 0.28 7.07 15.32 88.33 1.35 8.42 16 3 C -0.04 -0.96 5.74 -21.29 -0.12 -1.08 16 4 C -0.08 -1.24 9.71 22.37 0.22 -1.03 16 5 C -0.10 -1.47 9.75 22.41 0.22 -1.25 16 6 C -0.04 -0.78 4.53 -20.11 -0.09 -0.87 16 7 C -0.02 -0.30 9.80 23.83 0.23 -0.06 16 8 C -0.20 -3.43 9.91 23.65 0.23 -3.20 16 9 C 0.52 14.73 6.79 86.41 0.59 15.31 16 10 O -0.57 -19.84 12.16 -4.28 -0.05 -19.90 16 11 N -0.71 -22.39 5.55 -467.26 -2.59 -24.99 16 12 C 0.14 5.91 5.61 86.38 0.48 6.40 16 13 C 0.02 1.13 5.09 29.85 0.15 1.28 16 14 C -0.55 -30.36 9.11 25.60 0.23 -30.12 16 15 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 16 C 0.01 0.48 5.46 84.66 0.46 0.94 16 17 N -0.93 -53.75 13.29 21.45 0.28 -53.47 16 18 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 C -0.06 -1.30 6.56 22.42 0.15 -1.16 16 23 C -0.09 -2.17 9.71 22.37 0.22 -1.95 16 24 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 25 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 26 H 0.19 0.68 8.06 -2.91 -0.02 0.66 16 27 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 28 H 0.41 10.80 8.45 -92.70 -0.78 10.02 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 34 H 0.11 2.81 7.02 -2.91 -0.02 2.79 16 35 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -71.09 317.87 4.67 -66.42 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 0.33 Total: 8.45 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 4.33 Total: -8.36 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -1.96 Total: -92.03 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.90 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -71.09 4.67 -66.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492424538.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.367 kcal (2) G-P(sol) polarization free energy of solvation -71.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds