Wall clock time and date at job start Mon Mar 30 2020 01:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39791 * 120.06814 * 283.02123 * 3 2 1 5 5 C 1.38081 * 120.19284 * 180.25922 * 4 3 2 6 6 C 1.38040 * 120.33213 * 359.76594 * 5 4 3 7 7 C 1.39910 * 120.13174 * 359.97438 * 6 5 4 8 8 C 1.47235 * 120.09308 * 179.97438 * 7 6 5 9 9 C 1.34797 * 120.00188 * 0.02562 * 8 7 6 10 10 C 1.46430 * 119.99748 * 179.97438 * 9 8 7 11 11 O 1.21702 * 119.99898 * 359.97438 * 10 9 8 12 12 N 1.34769 * 120.00034 * 180.02562 * 10 9 8 13 13 C 1.46506 * 120.00333 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47117 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47145 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99984 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00395 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00362 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99934 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47074 * 89.99816 * 19 17 15 21 21 H 1.48495 * 109.47541 * 209.99667 * 19 17 15 22 22 H 1.48503 * 109.47085 * 330.00240 * 19 17 15 23 23 C 1.39296 * 120.06769 * 102.76418 * 3 2 1 24 24 H 1.07994 * 119.90172 * 359.97438 * 4 3 2 25 25 H 1.07993 * 119.83757 * 179.74332 * 5 4 3 26 26 H 1.07998 * 119.93295 * 179.97438 * 6 5 4 27 27 H 1.08000 * 119.99341 * 180.02562 * 8 7 6 28 28 H 1.08000 * 119.99941 * 359.97438 * 9 8 7 29 29 H 0.97008 * 120.00278 * 359.97438 * 12 10 9 30 30 H 1.08994 * 109.46749 * 299.99914 * 13 12 10 31 31 H 1.09002 * 109.47128 * 59.99478 * 13 12 10 32 32 H 1.08994 * 109.47761 * 299.99931 * 14 13 12 33 33 H 1.09002 * 109.47028 * 60.00054 * 14 13 12 34 34 H 0.97003 * 120.00112 * 180.02562 * 18 17 15 35 35 H 1.08002 * 120.16731 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 -0.2716 1.1787 5 6 4.6493 -0.2664 1.1828 6 6 5.3489 0.0025 0.0236 7 6 4.6617 0.2715 -1.1650 8 6 5.4088 0.5589 -2.4008 9 6 6.7567 0.5625 -2.3882 10 6 7.4995 0.8477 -3.6174 11 8 6.9000 1.0810 -4.6505 12 7 8.8472 0.8509 -3.6049 13 6 9.5905 1.1357 -4.8349 14 6 11.0922 1.0774 -4.5483 15 6 11.8568 1.3698 -5.8135 16 1 11.3249 1.5769 -6.7303 17 6 13.2355 1.3739 -5.8006 18 7 13.9028 1.6296 -6.9047 19 14 14.1558 1.0165 -4.2148 20 1 14.4066 -0.4432 -4.1063 21 1 15.4512 1.7422 -4.2197 22 1 13.3409 1.4660 -3.0575 23 6 3.2658 0.2673 -1.1757 24 1 2.7281 -0.4821 2.0897 25 1 5.1846 -0.4735 2.0976 26 1 6.4288 0.0053 0.0343 27 1 4.8767 0.7667 -3.3174 28 1 7.2887 0.3551 -1.4715 29 1 9.3251 0.6646 -2.7816 30 1 9.3359 0.3951 -5.5929 31 1 9.3281 2.1301 -5.1960 32 1 11.3466 1.8183 -3.7903 33 1 11.3549 0.0831 -4.1870 34 1 14.8727 1.6321 -6.8956 35 1 2.7295 0.4746 -2.0900 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492503083.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:17 Heat of formation + Delta-G solvation = 1.620119 kcal Electronic energy + Delta-G solvation = -17901.525721 eV Core-core repulsion = 14863.630730 eV Total energy + Delta-G solvation = -3037.894990 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.79790 -40.25491 -37.65635 -36.66266 -35.04561 -34.76390 -32.31512 -32.18213 -30.67302 -27.15709 -25.31409 -24.44137 -22.76117 -22.32627 -20.96541 -19.05612 -18.88110 -18.37499 -17.17973 -16.81209 -16.42661 -16.21937 -16.03773 -15.54799 -15.15520 -14.88199 -14.86028 -14.56165 -14.39955 -14.20645 -13.86353 -13.55793 -13.32404 -13.17394 -13.02302 -12.41669 -12.15981 -12.14117 -12.03545 -11.73221 -11.49748 -11.33032 -10.95091 -10.76713 -10.05103 -9.96517 -9.26767 -8.27855 -6.35512 -0.49896 -0.07882 0.95445 1.41718 1.44894 1.56124 1.56719 1.93983 2.34660 2.39504 2.40209 2.81099 2.96984 3.07271 3.62326 3.86928 4.02523 4.14625 4.19196 4.36867 4.39193 4.45272 4.45952 4.75024 4.77828 4.95573 5.04849 5.17582 5.25165 5.37828 5.41625 5.43570 5.47782 5.61019 5.67721 5.83614 6.24255 6.40027 6.67441 6.74624 7.28989 7.33980 8.88946 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.043578 B = 0.002545 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.364788 B =11000.370446 C =11622.279180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.279 3.721 3 C -0.046 4.046 4 C -0.053 4.053 5 C -0.114 4.114 6 C -0.066 4.066 7 C -0.081 4.081 8 C -0.022 4.022 9 C -0.199 4.199 10 C 0.531 3.469 11 O -0.602 6.602 12 N -0.709 5.709 13 C 0.143 3.857 14 C -0.012 4.012 15 C -0.541 4.541 16 H 0.026 0.974 17 C 0.001 3.999 18 N -0.952 5.952 19 Si 0.962 3.038 20 H -0.265 1.265 21 H -0.289 1.289 22 H -0.233 1.233 23 C -0.051 4.051 24 H 0.154 0.846 25 H 0.170 0.830 26 H 0.160 0.840 27 H 0.121 0.879 28 H 0.172 0.828 29 H 0.417 0.583 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.267 0.733 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.722 -5.571 24.081 29.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.036 4.036 3 C -0.049 4.049 4 C -0.074 4.074 5 C -0.131 4.131 6 C -0.084 4.084 7 C -0.081 4.081 8 C -0.042 4.042 9 C -0.219 4.219 10 C 0.322 3.678 11 O -0.486 6.486 12 N -0.360 5.360 13 C 0.019 3.981 14 C -0.050 4.050 15 C -0.579 4.579 16 H 0.045 0.955 17 C -0.196 4.196 18 N -0.592 5.592 19 Si 0.784 3.216 20 H -0.190 1.190 21 H -0.215 1.215 22 H -0.155 1.155 23 C -0.072 4.072 24 H 0.172 0.828 25 H 0.187 0.813 26 H 0.177 0.823 27 H 0.139 0.861 28 H 0.189 0.811 29 H 0.254 0.746 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.712 -5.383 23.275 30.345 hybrid contribution 1.126 0.060 -0.360 1.184 sum -17.585 -5.323 22.915 29.372 Atomic orbital electron populations 1.81299 1.13575 1.10732 1.08807 1.25980 0.92883 0.92265 0.92446 1.15936 0.83156 1.09424 0.96385 1.21638 0.95115 0.94120 0.96486 1.21415 0.93070 0.99080 0.99556 1.22064 1.02142 0.93180 0.91059 1.18807 0.92402 1.03305 0.93596 1.22313 0.93992 0.91289 0.96623 1.22964 0.95036 1.06586 0.97297 1.19104 0.82420 0.76543 0.89765 1.90791 1.69759 1.52087 1.35938 1.45949 1.06130 1.70409 1.13478 1.21023 0.91961 0.99094 0.86051 1.19651 0.90961 0.98105 0.96295 1.21282 0.92101 1.48665 0.95861 0.95548 1.26144 0.98683 0.94041 1.00766 1.70086 1.08069 1.50842 1.30210 0.85499 0.77593 0.78958 0.79567 1.18957 1.21473 1.15543 1.21476 0.93399 0.94994 0.97325 0.82811 0.81282 0.82292 0.86059 0.81096 0.74578 0.93954 0.93961 0.94245 0.94394 0.92380 0.84326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.30 18.54 19.00 0.35 -9.95 16 2 C 0.28 4.49 15.32 88.33 1.35 5.84 16 3 C -0.05 -0.49 5.72 -21.40 -0.12 -0.61 16 4 C -0.05 -0.31 9.75 22.61 0.22 -0.09 16 5 C -0.11 -0.39 10.01 22.19 0.22 -0.17 16 6 C -0.07 -0.41 9.41 22.63 0.21 -0.20 16 7 C -0.08 -0.92 5.86 -20.18 -0.12 -1.04 16 8 C -0.02 -0.37 9.46 23.85 0.23 -0.14 16 9 C -0.20 -3.50 9.41 23.61 0.22 -3.28 16 10 C 0.53 15.65 7.74 86.38 0.67 16.32 16 11 O -0.60 -23.83 16.23 -4.35 -0.07 -23.90 16 12 N -0.71 -20.69 5.55 -467.34 -2.59 -23.28 16 13 C 0.14 5.68 5.61 86.38 0.48 6.17 16 14 C -0.01 -0.53 4.16 29.85 0.12 -0.41 16 15 C -0.54 -30.52 9.66 25.60 0.25 -30.27 16 16 H 0.03 1.68 7.99 -2.91 -0.02 1.66 16 17 C 0.00 0.03 5.47 84.65 0.46 0.49 16 18 N -0.95 -59.00 13.96 21.45 0.30 -58.70 16 19 Si 0.96 41.21 27.47 68.60 1.88 43.10 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 21 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 22 H -0.23 -8.66 6.54 99.48 0.65 -8.01 16 23 C -0.05 -0.59 9.50 22.85 0.22 -0.38 16 24 H 0.15 0.28 8.06 -2.91 -0.02 0.26 16 25 H 0.17 -0.40 8.06 -2.91 -0.02 -0.42 16 26 H 0.16 0.30 6.15 -2.91 -0.02 0.28 16 27 H 0.12 2.45 7.52 -2.91 -0.02 2.43 16 28 H 0.17 1.46 6.06 -2.91 -0.02 1.44 16 29 H 0.42 8.74 8.45 -92.70 -0.78 7.95 16 30 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 33 H 0.04 1.50 7.57 -2.39 -0.02 1.48 16 34 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -78.54 319.29 4.58 -73.96 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 0.29 Total: 6.55 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 4.42 Total: -7.78 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -1.94 Total: -91.93 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.07 Total: -23.90 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.88 Total: 43.10 kcal Total: -78.54 4.58 -73.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492503083.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.581 kcal (2) G-P(sol) polarization free energy of solvation -78.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds