Wall clock time and date at job start Mon Mar 30 2020 01:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47074 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47300 * 300.00584 * 3 2 1 6 6 H 1.48508 * 109.46502 * 60.00363 * 3 2 1 7 7 C 1.37874 * 120.00424 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00921 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46983 * 179.97438 * 10 9 7 12 12 O 1.21649 * 119.99927 * 359.97438 * 11 10 9 13 13 N 1.32634 * 119.99726 * 179.97438 * 11 10 9 14 14 C 1.33982 * 119.99822 * 235.45986 * 13 11 10 15 15 C 1.41088 * 121.09706 * 5.34872 * 14 13 11 16 16 C 1.35245 * 120.11016 * 179.97438 * 15 14 13 17 17 N 1.35299 * 122.49542 * 359.97438 * 16 15 14 18 18 H 0.96996 * 119.20453 * 180.02562 * 17 16 15 19 19 C 1.37550 * 121.58579 * 0.02562 * 17 16 15 20 20 C 1.39233 * 121.16602 * 180.02562 * 19 17 16 21 21 C 1.37737 * 119.70034 * 180.02562 * 20 19 17 22 22 C 1.38868 * 120.72819 * 359.97438 * 21 20 19 23 23 C 1.36641 * 120.56758 * 0.02562 * 22 21 20 24 24 C 1.39591 * 119.66408 * 359.72787 * 23 22 21 25 25 H 0.97004 * 120.00233 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47415 * 59.99983 * 9 7 2 27 27 H 1.09001 * 109.46619 * 300.00065 * 9 7 2 28 28 H 1.09000 * 109.47160 * 60.00245 * 10 9 7 29 29 H 1.08996 * 109.47301 * 299.99993 * 10 9 7 30 30 H 1.07999 * 119.94471 * 0.02562 * 15 14 13 31 31 H 1.08006 * 118.75018 * 180.02562 * 16 15 14 32 32 H 1.07993 * 120.14612 * 359.96475 * 20 19 17 33 33 H 1.07995 * 119.63196 * 179.97438 * 21 20 19 34 34 H 1.08002 * 119.71561 * 179.97438 * 22 21 20 35 35 H 1.08001 * 120.16976 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2123 6 1 1.8903 2.3963 1.2127 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 0.0001 12 8 0.2753 -4.9672 0.0010 13 7 2.1551 -6.1158 -0.0003 14 6 1.9196 -7.0249 -0.9559 15 6 1.0553 -6.7414 -2.0344 16 6 0.8322 -7.6738 -2.9883 17 7 1.4117 -8.8961 -2.9597 18 1 1.2182 -9.5284 -3.6693 19 6 2.2687 -9.2636 -1.9485 20 6 2.8607 -10.5236 -1.9280 21 6 3.7140 -10.8601 -0.9004 22 6 3.9914 -9.9559 0.1165 23 6 3.4217 -8.7139 0.1165 24 6 2.5579 -8.3500 -0.9179 25 1 -0.4851 0.8401 0.0004 26 1 0.6240 -2.5568 -0.8902 27 1 0.6247 -2.5570 0.8897 28 1 2.8720 -3.6043 0.8895 29 1 2.8720 -3.6043 -0.8905 30 1 0.5716 -5.7780 -2.0987 31 1 0.1668 -7.4333 -3.8044 32 1 2.6511 -11.2342 -2.7137 33 1 4.1722 -11.8379 -0.8853 34 1 4.6626 -10.2371 0.9145 35 1 3.6423 -8.0156 0.9103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514700296.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:08 Heat of formation + Delta-G solvation = 26.135944 kcal Electronic energy + Delta-G solvation = -19113.399430 eV Core-core repulsion = 16076.567526 eV Total energy + Delta-G solvation = -3036.831904 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.11157 -39.03854 -37.42432 -35.09716 -33.33838 -31.65189 -30.93940 -30.73413 -29.74956 -25.94971 -24.26065 -23.76482 -22.82691 -21.12227 -19.29160 -18.56641 -18.04776 -17.38504 -16.56499 -15.81620 -15.21175 -14.95992 -14.51540 -14.43600 -14.35095 -14.16219 -13.95624 -13.43918 -13.10747 -12.30685 -12.20951 -12.03571 -11.72276 -11.44612 -11.35537 -11.03985 -10.87829 -10.50995 -9.90405 -9.82722 -9.53214 -9.39023 -9.07358 -8.97717 -8.63974 -8.25497 -7.45495 -5.89178 -3.92703 0.42152 0.83003 1.48508 2.59874 2.66643 3.22619 3.37327 3.43982 3.48649 3.83085 4.13128 4.28999 4.53092 4.58045 4.71019 4.90023 4.92217 5.00480 5.20491 5.39751 5.45481 5.68398 5.74385 5.82425 5.95309 6.17820 6.30893 6.38375 6.48533 6.52075 6.67309 6.77185 6.93642 7.16555 7.81961 7.91310 7.96552 8.15063 8.48604 8.81033 9.15717 9.70289 11.21917 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.035459 B = 0.003542 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.445125 B = 7902.750467 C = 8297.912709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.034 3.966 10 C -0.127 4.127 11 C 0.484 3.516 12 O -0.512 6.512 13 N -0.599 5.599 14 C 0.314 3.686 15 C -0.269 4.269 16 C 0.160 3.840 17 N -0.614 5.614 18 H 0.417 0.583 19 C 0.185 3.815 20 C -0.176 4.176 21 C -0.062 4.062 22 C -0.162 4.162 23 C -0.026 4.026 24 C -0.109 4.109 25 H 0.259 0.741 26 H 0.020 0.980 27 H 0.023 0.977 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.152 0.848 31 H 0.165 0.835 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.521 -25.934 -8.146 27.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.003 4.003 10 C -0.167 4.167 11 C 0.274 3.726 12 O -0.388 6.388 13 N -0.329 5.329 14 C 0.148 3.852 15 C -0.297 4.297 16 C 0.030 3.970 17 N -0.223 5.223 18 H 0.253 0.747 19 C 0.082 3.918 20 C -0.198 4.198 21 C -0.081 4.081 22 C -0.181 4.181 23 C -0.046 4.046 24 C -0.114 4.114 25 H 0.069 0.931 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.170 0.830 31 H 0.182 0.818 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.164 -25.423 -7.300 27.159 hybrid contribution -0.105 0.974 -0.758 1.239 sum 6.059 -24.448 -8.058 26.445 Atomic orbital electron populations 1.70014 1.06044 1.26336 1.50683 1.25033 0.94831 0.99201 0.95425 0.86534 0.80091 0.83838 0.77518 1.19714 1.21070 1.21016 1.21295 0.93031 0.91012 1.50740 0.92538 1.18937 0.93318 0.89778 0.98305 1.21848 1.00490 0.91799 1.02561 1.22197 0.88017 0.89875 0.72527 1.90728 1.16233 1.90264 1.41621 1.68387 1.31913 1.05081 1.27525 1.19804 0.86660 0.88625 0.90129 1.21542 1.07607 1.02785 0.97802 1.21527 0.93537 0.83714 0.98250 1.41063 1.41945 1.14874 1.24404 0.74682 1.17885 0.91522 0.94042 0.88389 1.20569 1.02525 0.94579 1.02078 1.21086 0.95093 0.99269 0.92687 1.20892 1.02808 0.94224 1.00167 1.21024 0.91583 0.96003 0.96010 1.18464 1.03422 0.92445 0.97065 0.93105 0.96176 0.95891 0.89928 0.90457 0.83040 0.81768 0.85095 0.85295 0.85309 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.40 13.29 55.43 0.74 -27.67 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.48 29.54 -169.99 -5.02 17.46 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.52 -15.73 9.11 -34.44 -0.31 -16.04 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.99 4.26 -27.88 -0.12 0.87 16 10 C -0.13 -3.05 5.71 -27.88 -0.16 -3.21 16 11 C 0.48 11.25 6.30 -11.93 -0.08 11.17 16 12 O -0.51 -13.34 15.24 5.23 0.08 -13.26 16 13 N -0.60 -11.96 9.81 -8.89 -0.09 -12.05 16 14 C 0.31 5.20 6.72 -82.24 -0.55 4.65 16 15 C -0.27 -3.96 8.89 -39.57 -0.35 -4.31 16 16 C 0.16 1.46 11.06 -17.09 -0.19 1.27 16 17 N -0.61 -4.35 5.30 -10.77 -0.06 -4.41 16 18 H 0.42 1.22 8.79 -40.82 -0.36 0.86 16 19 C 0.19 1.75 6.66 -83.99 -0.56 1.19 16 20 C -0.18 -1.21 9.92 -39.39 -0.39 -1.60 16 21 C -0.06 -0.42 10.01 -39.53 -0.40 -0.82 16 22 C -0.16 -1.37 9.97 -39.93 -0.40 -1.77 16 23 C -0.03 -0.31 9.60 -39.65 -0.38 -0.69 16 24 C -0.11 -1.42 5.89 -104.85 -0.62 -2.03 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 26 H 0.02 0.62 8.10 -51.93 -0.42 0.20 16 27 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 29 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.15 2.63 6.41 -52.49 -0.34 2.29 16 31 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 32 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 33 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.14 1.78 7.71 -52.49 -0.40 1.38 16 LS Contribution 307.74 15.07 4.64 4.64 Total: -1.00 -38.87 307.74 -8.33 -47.20 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -4.02 Total: -2.22 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -4.60 Total: -9.70 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.59 Total: -44.12 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.08 Total: -13.26 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -38.87 -8.33 -47.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514700296.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.337 kcal (2) G-P(sol) polarization free energy of solvation -38.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds