Wall clock time and date at job start Mon Mar 30 2020 01:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47074 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47300 * 300.00584 * 3 2 1 6 6 H 1.48508 * 109.46502 * 60.00363 * 3 2 1 7 7 C 1.37874 * 120.00424 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00921 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46983 * 179.97438 * 10 9 7 12 12 O 1.21649 * 119.99927 * 359.97438 * 11 10 9 13 13 N 1.32634 * 119.99726 * 179.97438 * 11 10 9 14 14 C 1.33982 * 119.99822 * 235.45986 * 13 11 10 15 15 C 1.41088 * 121.09706 * 5.34872 * 14 13 11 16 16 C 1.35245 * 120.11016 * 179.97438 * 15 14 13 17 17 N 1.35299 * 122.49542 * 359.97438 * 16 15 14 18 18 H 0.96996 * 119.20453 * 180.02562 * 17 16 15 19 19 C 1.37550 * 121.58579 * 0.02562 * 17 16 15 20 20 C 1.39233 * 121.16602 * 180.02562 * 19 17 16 21 21 C 1.37737 * 119.70034 * 180.02562 * 20 19 17 22 22 C 1.38868 * 120.72819 * 359.97438 * 21 20 19 23 23 C 1.36641 * 120.56758 * 0.02562 * 22 21 20 24 24 C 1.39591 * 119.66408 * 359.72787 * 23 22 21 25 25 H 0.97004 * 120.00233 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47415 * 59.99983 * 9 7 2 27 27 H 1.09001 * 109.46619 * 300.00065 * 9 7 2 28 28 H 1.09000 * 109.47160 * 60.00245 * 10 9 7 29 29 H 1.08996 * 109.47301 * 299.99993 * 10 9 7 30 30 H 1.07999 * 119.94471 * 0.02562 * 15 14 13 31 31 H 1.08006 * 118.75018 * 180.02562 * 16 15 14 32 32 H 1.07993 * 120.14612 * 359.96475 * 20 19 17 33 33 H 1.07995 * 119.63196 * 179.97438 * 21 20 19 34 34 H 1.08002 * 119.71561 * 179.97438 * 22 21 20 35 35 H 1.08001 * 120.16976 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2123 6 1 1.8903 2.3963 1.2127 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 0.0001 12 8 0.2753 -4.9672 0.0010 13 7 2.1551 -6.1158 -0.0003 14 6 1.9196 -7.0249 -0.9559 15 6 1.0553 -6.7414 -2.0344 16 6 0.8322 -7.6738 -2.9883 17 7 1.4117 -8.8961 -2.9597 18 1 1.2182 -9.5284 -3.6693 19 6 2.2687 -9.2636 -1.9485 20 6 2.8607 -10.5236 -1.9280 21 6 3.7140 -10.8601 -0.9004 22 6 3.9914 -9.9559 0.1165 23 6 3.4217 -8.7139 0.1165 24 6 2.5579 -8.3500 -0.9179 25 1 -0.4851 0.8401 0.0004 26 1 0.6240 -2.5568 -0.8902 27 1 0.6247 -2.5570 0.8897 28 1 2.8720 -3.6043 0.8895 29 1 2.8720 -3.6043 -0.8905 30 1 0.5716 -5.7780 -2.0987 31 1 0.1668 -7.4333 -3.8044 32 1 2.6511 -11.2342 -2.7137 33 1 4.1722 -11.8379 -0.8853 34 1 4.6626 -10.2371 0.9145 35 1 3.6423 -8.0156 0.9103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514700296.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:07 Heat of formation + Delta-G solvation = -3.510326 kcal Electronic energy + Delta-G solvation = -19114.684989 eV Core-core repulsion = 16076.567526 eV Total energy + Delta-G solvation = -3038.117463 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.02939 -40.55432 -38.21938 -36.37793 -35.57444 -33.19105 -32.43867 -31.68344 -30.72034 -27.96008 -25.53921 -24.60020 -23.98067 -22.84041 -20.66152 -19.40720 -19.14468 -18.71420 -18.16647 -17.48841 -16.56616 -16.35466 -16.26452 -15.58442 -15.46880 -15.19334 -15.03793 -14.55385 -14.30212 -14.03748 -13.83989 -13.34924 -13.03900 -12.86638 -12.60780 -12.50571 -12.40696 -12.17145 -12.01123 -11.71662 -11.47218 -11.25913 -10.62272 -10.29077 -10.14376 -9.83361 -8.52332 -8.21774 -6.37548 -0.54767 -0.01208 0.66143 1.30749 1.37934 1.41074 1.54998 1.91760 2.07123 2.39195 2.92425 3.00622 3.09187 3.51663 3.72422 3.86400 4.01533 4.15213 4.34443 4.36877 4.43343 4.46848 4.54943 4.69243 4.87430 4.96518 4.99369 5.14049 5.40683 5.43552 5.48479 5.54125 5.65126 5.67543 5.77287 5.96584 6.12809 6.30124 6.48680 6.79399 7.27408 7.32835 8.91054 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.035459 B = 0.003542 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.445125 B = 7902.750467 C = 8297.912709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.981 3.019 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.548 4.548 8 H 0.069 0.931 9 C 0.047 3.953 10 C -0.118 4.118 11 C 0.495 3.505 12 O -0.571 6.571 13 N -0.659 5.659 14 C 0.316 3.684 15 C -0.341 4.341 16 C 0.228 3.772 17 N -0.579 5.579 18 H 0.447 0.553 19 C 0.175 3.825 20 C -0.154 4.154 21 C -0.050 4.050 22 C -0.152 4.152 23 C -0.056 4.056 24 C -0.142 4.142 25 H 0.265 0.735 26 H -0.015 1.015 27 H -0.021 1.021 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.218 0.782 32 H 0.181 0.819 33 H 0.173 0.827 34 H 0.150 0.850 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.542 -29.896 -10.988 32.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.804 3.196 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.586 4.586 8 H 0.087 0.913 9 C 0.009 3.991 10 C -0.157 4.157 11 C 0.285 3.715 12 O -0.451 6.451 13 N -0.395 5.395 14 C 0.159 3.841 15 C -0.370 4.370 16 C 0.093 3.907 17 N -0.187 5.187 18 H 0.289 0.711 19 C 0.071 3.929 20 C -0.174 4.174 21 C -0.070 4.070 22 C -0.170 4.170 23 C -0.076 4.076 24 C -0.146 4.146 25 H 0.074 0.926 26 H 0.003 0.997 27 H -0.002 1.002 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.131 0.869 31 H 0.235 0.765 32 H 0.198 0.802 33 H 0.190 0.810 34 H 0.168 0.832 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.232 -29.530 -10.206 32.310 hybrid contribution -0.710 1.690 -0.078 1.835 sum 7.522 -27.840 -10.284 30.617 Atomic orbital electron populations 1.70188 1.08302 1.27947 1.51155 1.26200 0.95873 1.04055 0.94246 0.85176 0.78990 0.77503 0.77965 1.18016 1.19871 1.20165 1.21693 0.93766 0.91692 1.51412 0.91254 1.18677 0.93464 0.92421 0.94494 1.21622 0.99374 0.91435 1.03310 1.21959 0.87110 0.90764 0.71638 1.90653 1.18258 1.90778 1.45429 1.68136 1.36171 1.05268 1.29956 1.20455 0.85482 0.89228 0.88959 1.21294 1.11149 1.03683 1.00897 1.22081 0.90052 0.82322 0.96289 1.41266 1.39147 1.14363 1.23953 0.71104 1.18119 0.92289 0.94611 0.87926 1.21144 1.00168 0.93404 1.02673 1.21650 0.93866 1.00300 0.91140 1.21227 1.01739 0.92852 1.01223 1.20991 0.93219 0.97477 0.95880 1.18616 1.04923 0.91568 0.99513 0.92610 0.99676 1.00228 0.89449 0.89183 0.86947 0.76513 0.80221 0.80978 0.83196 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.56 13.29 21.45 0.28 -62.28 16 2 C -0.01 -0.40 5.46 84.65 0.46 0.07 16 3 Si 0.98 47.24 29.54 68.60 2.03 49.26 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.55 -34.74 9.11 25.60 0.23 -34.51 16 8 H 0.07 4.11 7.74 -2.91 -0.02 4.09 16 9 C 0.05 3.00 4.26 29.85 0.13 3.13 16 10 C -0.12 -6.25 5.71 29.85 0.17 -6.07 16 11 C 0.49 25.93 6.30 87.99 0.55 26.48 16 12 O -0.57 -33.68 15.24 -4.19 -0.06 -33.74 16 13 N -0.66 -29.53 9.81 -301.47 -2.96 -32.49 16 14 C 0.32 11.33 6.72 41.85 0.28 11.61 16 15 C -0.34 -10.64 8.89 22.28 0.20 -10.45 16 16 C 0.23 3.49 11.06 83.47 0.92 4.41 16 17 N -0.58 -5.25 5.30 -187.99 -1.00 -6.25 16 18 H 0.45 -0.69 8.79 -92.71 -0.81 -1.51 16 19 C 0.17 2.61 6.66 39.09 0.26 2.87 16 20 C -0.15 -1.09 9.92 22.39 0.22 -0.87 16 21 C -0.05 -0.39 10.01 22.30 0.22 -0.16 16 22 C -0.15 -2.13 9.97 22.05 0.22 -1.91 16 23 C -0.06 -1.32 9.60 22.22 0.21 -1.10 16 24 C -0.14 -3.66 5.89 -20.01 -0.12 -3.77 16 25 H 0.27 16.34 8.31 -92.71 -0.77 15.57 16 26 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 27 H -0.02 -1.47 8.10 -2.39 -0.02 -1.49 16 28 H 0.09 4.43 8.14 -2.39 -0.02 4.41 16 29 H 0.09 4.43 8.14 -2.39 -0.02 4.41 16 30 H 0.11 4.44 6.41 -2.91 -0.02 4.43 16 31 H 0.22 1.12 8.06 -2.91 -0.02 1.10 16 32 H 0.18 -0.35 8.06 -2.91 -0.02 -0.37 16 33 H 0.17 -0.01 8.06 -2.91 -0.02 -0.03 16 34 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 35 H 0.12 3.31 7.71 -2.91 -0.02 3.29 16 Total: -1.00 -99.09 307.74 2.57 -96.52 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: 0.30 Total: -0.75 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 3.97 Total: -10.28 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -3.67 Total: -101.02 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.06 Total: -33.74 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.26 kcal Total: -99.09 2.57 -96.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514700296.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.013 kcal (2) G-P(sol) polarization free energy of solvation -99.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds