Wall clock time and date at job start Mon Mar 30 2020 01:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31279 * 1 3 3 Si 1.86802 * 119.99947 * 2 1 4 4 H 1.48505 * 109.47021 * 269.99738 * 3 2 1 5 5 H 1.48494 * 109.47327 * 29.99835 * 3 2 1 6 6 H 1.48505 * 109.47242 * 149.99923 * 3 2 1 7 7 C 1.39000 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99781 * 180.02562 * 7 2 1 9 9 N 1.37296 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.36120 * 125.97010 * 179.71516 * 9 7 2 11 11 C 1.36370 * 107.45703 * 179.89760 * 10 9 7 12 12 C 1.48414 * 126.20296 * 180.15426 * 11 10 9 13 13 C 1.39372 * 120.06149 * 359.97438 * 12 11 10 14 14 C 1.37930 * 119.92556 * 179.74173 * 13 12 11 15 15 C 1.38811 * 120.07028 * 0.55467 * 14 13 12 16 16 O 1.35906 * 119.93795 * 179.71686 * 15 14 13 17 17 C 1.42900 * 117.00361 * 174.44623 * 16 15 14 18 18 C 1.52998 * 117.49716 * 224.93093 * 17 16 15 19 19 C 1.52999 * 117.49784 * 156.27159 * 17 16 15 20 20 C 1.38820 * 120.13172 * 359.70432 * 15 14 13 21 21 C 1.37932 * 120.06405 * 0.02562 * 20 15 14 22 22 C 1.41171 * 107.59564 * 0.36495 * 11 10 9 23 23 N 1.30728 * 108.29347 * 359.77352 * 22 11 10 24 24 H 0.97002 * 120.00143 * 359.97438 * 1 2 3 25 25 H 1.07999 * 126.27183 * 0.03395 * 10 9 7 26 26 H 1.07994 * 120.03310 * 0.02562 * 13 12 11 27 27 H 1.08007 * 119.96225 * 180.27596 * 14 13 12 28 28 H 1.08997 * 115.54841 * 10.60043 * 17 16 15 29 29 H 1.08993 * 117.50149 * 359.97438 * 18 17 16 30 30 H 1.08996 * 117.49536 * 145.02273 * 18 17 16 31 31 H 1.09002 * 117.49586 * 214.98127 * 19 17 16 32 32 H 1.08995 * 117.50078 * 359.97343 * 19 17 16 33 33 H 1.07999 * 119.96861 * 180.02562 * 20 15 14 34 34 H 1.07995 * 120.03123 * 180.02562 * 21 20 15 35 35 H 1.08003 * 125.85166 * 179.80598 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 2.4943 2.0464 -1.4001 5 1 1.4443 2.6527 0.7000 6 1 3.5444 1.4402 0.7001 7 6 2.0078 -1.2037 0.0005 8 1 3.0879 -1.2037 0.0010 9 7 1.3214 -2.3928 0.0005 10 6 1.8757 -3.6360 -0.0044 11 6 0.8542 -4.5394 -0.0002 12 6 0.9909 -6.0172 0.0000 13 6 2.2563 -6.6013 -0.0050 14 6 2.3801 -7.9750 0.0006 15 6 1.2461 -8.7756 -0.0004 16 8 1.3713 -10.1289 -0.0007 17 6 0.1691 -10.8917 0.1214 18 6 0.1777 -12.0729 1.0938 19 6 0.1836 -12.3240 -0.4162 20 6 -0.0156 -8.1967 -0.0009 21 6 -0.1458 -6.8235 -0.0008 22 6 -0.3570 -3.8141 -0.0009 23 7 -0.0713 -2.5384 -0.0005 24 1 -0.4850 0.8401 0.0004 25 1 2.9311 -3.8650 -0.0086 26 1 3.1388 -5.9789 -0.0086 27 1 3.3605 -8.4283 0.0012 28 1 -0.7580 -10.3268 0.0239 29 1 1.1005 -12.2685 1.6400 30 1 -0.7438 -12.2854 1.6356 31 1 -0.7341 -12.7016 -0.8671 32 1 1.1099 -12.6844 -0.8635 33 1 -0.8961 -8.8221 -0.0012 34 1 -1.1276 -6.3737 -0.0007 35 1 -1.3494 -4.2401 -0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530248653.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:11 Heat of formation + Delta-G solvation = 98.303047 kcal Electronic energy + Delta-G solvation = -18871.118076 eV Core-core repulsion = 15837.415572 eV Total energy + Delta-G solvation = -3033.702504 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.98827 -39.44890 -37.52837 -35.21539 -33.63386 -30.98264 -30.67536 -29.98914 -27.17375 -25.06970 -23.65254 -22.65996 -22.14478 -21.15324 -20.13878 -18.99315 -18.37592 -17.45300 -15.82324 -15.62921 -15.12564 -15.03219 -14.64275 -14.29778 -13.88059 -13.41533 -13.36570 -13.13679 -12.89055 -12.32479 -11.91926 -11.88497 -11.78360 -11.46346 -11.29338 -11.28045 -10.88296 -10.73793 -10.52737 -10.20843 -10.13746 -9.52756 -8.85274 -8.58935 -8.38463 -8.13221 -6.67896 -6.65978 -4.34169 1.75800 1.81689 2.92296 3.00927 3.05653 3.14915 3.48518 3.62976 3.76563 3.97152 4.50903 4.62451 4.67287 4.74497 4.88041 4.95930 5.09512 5.25672 5.37136 5.39374 5.62744 5.66090 5.85761 5.88145 5.92125 6.11631 6.16813 6.35771 6.53307 6.69800 6.79564 6.88953 6.99209 7.12083 7.28025 7.58357 7.75122 7.76299 8.07743 8.57306 9.27326 9.52652 10.30052 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.064398 B = 0.003138 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.693268 B = 8920.910401 C = 9272.742826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.047 3.953 3 Si 0.935 3.065 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.327 4.327 8 H 0.118 0.882 9 N -0.144 5.144 10 C -0.042 4.042 11 C -0.251 4.251 12 C 0.025 3.975 13 C -0.105 4.105 14 C -0.137 4.137 15 C 0.083 3.917 16 O -0.290 6.290 17 C 0.007 3.993 18 C -0.188 4.188 19 C -0.176 4.176 20 C -0.193 4.193 21 C -0.103 4.103 22 C -0.018 4.018 23 N -0.264 5.264 24 H 0.276 0.724 25 H 0.147 0.853 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.125 0.875 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 -15.223 0.321 15.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.170 4.170 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.458 4.458 8 H 0.136 0.864 9 N 0.093 4.907 10 C -0.193 4.193 11 C -0.264 4.264 12 C 0.023 3.977 13 C -0.124 4.124 14 C -0.156 4.156 15 C 0.039 3.961 16 O -0.204 6.204 17 C -0.050 4.050 18 C -0.225 4.225 19 C -0.213 4.213 20 C -0.212 4.212 21 C -0.121 4.121 22 C -0.196 4.196 23 N -0.091 5.091 24 H 0.086 0.914 25 H 0.165 0.835 26 H 0.142 0.858 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.314 -13.878 0.312 13.885 hybrid contribution 0.495 -0.135 0.010 0.513 sum 0.808 -14.013 0.323 14.040 Atomic orbital electron populations 1.70196 1.06217 1.28169 1.35029 1.25668 0.95726 1.00433 0.95176 0.85809 0.79471 0.79728 0.79086 1.19474 1.20012 1.18679 1.19971 0.91845 0.80712 1.53321 0.86396 1.44809 1.03885 1.03984 1.38036 1.21997 0.97747 0.84991 1.14604 1.18216 0.92896 0.90559 1.24743 1.18217 0.92042 0.91640 0.95760 1.20903 0.97367 0.92975 1.01139 1.20206 0.96425 0.92731 1.06202 1.18776 0.94164 0.81351 1.01823 1.85952 1.30675 1.15673 1.88135 1.22971 0.89315 0.87610 1.05055 1.23446 1.04015 1.02099 0.92967 1.23337 1.04026 0.97259 0.96679 1.21000 0.95788 0.95848 1.08553 1.20850 0.98582 0.91958 1.00760 1.23655 0.97333 0.92037 1.06541 1.78099 0.90511 1.15401 1.25044 0.91359 0.83509 0.85772 0.86118 0.85789 0.88034 0.87973 0.87811 0.88013 0.86113 0.86113 0.82922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.96 11.80 55.50 0.66 -20.31 16 2 C 0.05 1.20 5.50 -17.51 -0.10 1.10 16 3 Si 0.94 18.58 29.55 -169.99 -5.02 13.55 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.33 -8.52 10.24 -14.82 -0.15 -8.67 16 8 H 0.12 2.76 7.83 -52.48 -0.41 2.35 16 9 N -0.14 -3.87 3.72 -11.34 -0.04 -3.91 16 10 C -0.04 -0.99 10.84 -16.32 -0.18 -1.16 16 11 C -0.25 -5.66 6.04 -105.27 -0.64 -6.29 16 12 C 0.03 0.49 5.88 -104.87 -0.62 -0.13 16 13 C -0.11 -1.82 9.56 -39.27 -0.38 -2.19 16 14 C -0.14 -2.18 9.97 -39.48 -0.39 -2.57 16 15 C 0.08 1.31 6.68 -39.15 -0.26 1.05 16 16 O -0.29 -4.24 10.39 -19.45 -0.20 -4.44 16 17 C 0.01 0.08 6.20 -26.73 -0.17 -0.08 16 18 C -0.19 -1.69 10.48 -26.69 -0.28 -1.97 16 19 C -0.18 -1.54 10.48 -26.69 -0.28 -1.82 16 20 C -0.19 -2.96 9.17 -39.48 -0.36 -3.32 16 21 C -0.10 -1.76 9.57 -39.28 -0.38 -2.14 16 22 C -0.02 -0.44 11.42 -16.91 -0.19 -0.63 16 23 N -0.26 -7.32 10.36 30.88 0.32 -7.00 16 24 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.15 2.97 7.28 -52.49 -0.38 2.59 16 26 H 0.12 1.98 7.01 -52.49 -0.37 1.61 16 27 H 0.12 1.68 8.06 -52.48 -0.42 1.25 16 28 H 0.12 1.26 5.32 -51.93 -0.28 0.98 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.12 1.50 5.50 -52.49 -0.29 1.22 16 34 H 0.12 1.93 7.04 -52.49 -0.37 1.56 16 35 H 0.15 3.16 7.34 -52.48 -0.39 2.77 16 LS Contribution 305.44 15.07 4.60 4.60 Total: -1.00 -30.61 305.44 -7.78 -38.39 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -3.73 Total: 7.95 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: -4.37 Total: -28.84 kcal Atomic # 7 Polarization: -32.15 SS G_CDS: 0.93 Total: -31.22 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.20 Total: -4.44 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.61 -7.78 -38.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530248653.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.694 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds