Wall clock time and date at job start Mon Mar 30 2020 01:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00289 * 2 1 4 4 H 1.48501 * 109.46880 * 269.99426 * 3 2 1 5 5 H 1.48497 * 109.47490 * 29.99589 * 3 2 1 6 6 H 1.48499 * 109.46954 * 149.99939 * 3 2 1 7 7 C 1.37880 * 119.99334 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00270 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99711 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47203 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47056 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00049 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99830 * 179.97438 * 11 10 9 14 14 C 1.39485 * 119.99705 * 185.51394 * 13 11 10 15 15 C 1.37950 * 120.37301 * 24.87206 * 14 13 11 16 16 C 1.39099 * 120.84717 * 180.22821 * 15 14 13 17 17 C 1.36333 * 121.12234 * 359.47262 * 16 15 14 18 18 C 1.40142 * 119.78580 * 0.52044 * 17 16 15 19 19 C 1.40761 * 122.14303 * 179.76700 * 18 17 16 20 20 C 1.36158 * 118.66096 * 179.97438 * 19 18 17 21 21 N 1.32616 * 121.86419 * 0.02562 * 20 19 18 22 22 C 1.31309 * 122.75388 * 359.95548 * 21 20 19 23 23 C 1.40197 * 119.90201 * 0.04867 * 22 21 20 24 24 H 0.97003 * 119.99371 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47217 * 59.99546 * 9 7 2 26 26 H 1.09003 * 109.46746 * 299.99765 * 9 7 2 27 27 H 1.09000 * 109.46971 * 59.99553 * 10 9 7 28 28 H 1.09005 * 109.46510 * 300.00099 * 10 9 7 29 29 H 0.96995 * 119.99774 * 5.51891 * 13 11 10 30 30 H 1.08001 * 119.58138 * 359.94870 * 15 14 13 31 31 H 1.08004 * 119.44197 * 179.71999 * 16 15 14 32 32 H 1.08000 * 120.11232 * 180.23720 * 17 16 15 33 33 H 1.07994 * 120.66557 * 359.97438 * 19 18 17 34 34 H 1.07999 * 119.06161 * 180.02562 * 20 19 18 35 35 H 1.07995 * 120.05037 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1943 0.0011 10 6 4.0214 -2.6368 0.0010 11 6 5.5284 -2.6368 0.0009 12 8 6.1348 -1.5865 0.0005 13 7 6.2022 -3.8041 0.0014 14 6 7.5922 -3.8069 0.1174 15 6 8.2435 -2.7536 0.7251 16 6 9.6296 -2.7440 0.8420 17 6 10.3837 -3.7772 0.3703 18 6 9.7601 -4.8661 -0.2538 19 6 10.4904 -5.9564 -0.7629 20 6 9.8118 -6.9773 -1.3554 21 7 8.4901 -6.9694 -1.4641 22 6 7.7460 -5.9865 -1.0121 23 6 8.3471 -4.8862 -0.3847 24 1 -0.4849 0.8401 -0.0004 25 1 3.8745 -0.6802 0.8911 26 1 3.8751 -0.6807 -0.8889 27 1 3.6583 -3.1504 -0.8892 28 1 3.6576 -3.1507 0.8908 29 1 5.7205 -4.6422 -0.0791 30 1 7.6703 -1.9237 1.1112 31 1 10.1164 -1.9056 1.3180 32 1 11.4585 -3.7545 0.4731 33 1 11.5672 -5.9825 -0.6850 34 1 10.3656 -7.8173 -1.7479 35 1 6.6725 -6.0254 -1.1237 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000555228577.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:21 Heat of formation + Delta-G solvation = -7.934179 kcal Electronic energy + Delta-G solvation = -19218.143156 eV Core-core repulsion = 16179.833860 eV Total energy + Delta-G solvation = -3038.309296 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.23194 -40.85773 -38.22492 -36.27302 -35.57644 -33.55113 -32.84017 -32.08208 -30.16172 -27.99582 -25.29752 -24.81773 -24.00210 -22.36596 -21.33135 -19.40979 -19.33965 -18.66203 -17.92010 -17.13274 -17.02971 -16.58819 -16.22524 -15.57012 -15.37907 -15.31956 -15.06388 -14.70736 -14.64446 -14.41536 -13.68176 -13.41718 -13.24812 -12.91009 -12.85261 -12.53040 -12.13405 -11.99059 -11.94548 -11.76938 -11.40663 -10.84943 -10.78188 -10.57205 -10.39873 -10.10264 -8.65273 -8.31424 -6.34582 -0.65906 -0.12210 0.77753 1.33847 1.36181 1.49836 1.55161 1.89619 2.13282 2.34769 3.04648 3.07554 3.41510 3.60637 3.69702 3.78084 3.86972 3.96909 4.26329 4.32979 4.43503 4.46117 4.51730 4.65872 4.73482 4.85487 4.95542 5.07593 5.26769 5.31061 5.36236 5.42480 5.48680 5.60456 5.65840 5.89939 6.21639 6.31243 6.72254 6.96560 7.02863 7.30886 8.84196 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.035029 B = 0.003806 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.153162 B = 7355.415358 C = 8024.668547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.529 4.529 8 H 0.052 0.948 9 C 0.004 3.996 10 C -0.115 4.115 11 C 0.518 3.482 12 O -0.550 6.550 13 N -0.658 5.658 14 C 0.169 3.831 15 C -0.165 4.165 16 C -0.076 4.076 17 C -0.133 4.133 18 C -0.024 4.024 19 C -0.147 4.147 20 C 0.063 3.937 21 N -0.510 5.510 22 C 0.137 3.863 23 C -0.143 4.143 24 H 0.267 0.733 25 H 0.014 0.986 26 H 0.011 0.989 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.427 0.573 30 H 0.128 0.872 31 H 0.150 0.850 32 H 0.164 0.836 33 H 0.173 0.827 34 H 0.180 0.820 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.891 -13.106 0.430 27.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.185 4.185 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.567 4.567 8 H 0.070 0.930 9 C -0.034 4.034 10 C -0.154 4.154 11 C 0.308 3.692 12 O -0.427 6.427 13 N -0.303 5.303 14 C 0.071 3.929 15 C -0.186 4.186 16 C -0.096 4.096 17 C -0.151 4.151 18 C -0.029 4.029 19 C -0.167 4.167 20 C -0.080 4.080 21 N -0.218 5.218 22 C -0.034 4.034 23 C -0.147 4.147 24 H 0.076 0.924 25 H 0.032 0.968 26 H 0.029 0.971 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.267 0.733 30 H 0.146 0.854 31 H 0.168 0.832 32 H 0.182 0.818 33 H 0.191 0.809 34 H 0.197 0.803 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 23.798 -13.031 0.002 27.132 hybrid contribution -0.251 1.349 0.349 1.416 sum 23.547 -11.681 0.351 26.287 Atomic orbital electron populations 1.70027 1.07846 1.28090 1.52491 1.25809 0.95472 1.02886 0.94314 0.85833 0.79331 0.79503 0.79073 1.19519 1.20579 1.18238 1.21420 0.91221 0.93749 1.50303 0.93005 1.19250 0.93994 0.93490 0.96702 1.21555 0.87538 1.00481 1.05866 1.21513 0.91457 0.82617 0.73600 1.90631 1.70745 1.32853 1.48480 1.43477 1.04685 1.10561 1.71587 1.17773 0.83242 0.95472 0.96421 1.21502 0.96218 0.99692 1.01204 1.21115 0.92327 0.98997 0.97113 1.21214 1.01563 0.92628 0.99739 1.18371 0.91524 0.96169 0.96871 1.22242 1.02593 0.93126 0.98698 1.22713 0.89597 0.99156 0.96521 1.67500 1.08582 1.27354 1.18403 1.23198 1.00777 0.87651 0.91780 1.18859 0.94574 0.97167 1.04095 0.92406 0.96774 0.97067 0.87134 0.87077 0.73299 0.85396 0.83227 0.81818 0.80949 0.80344 0.80982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.42 13.96 21.45 0.30 -58.12 16 2 C 0.01 0.75 5.47 84.66 0.46 1.22 16 3 Si 0.94 45.78 27.47 68.60 1.88 47.67 16 4 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.26 -12.37 6.54 99.48 0.65 -11.72 16 7 C -0.53 -29.62 9.66 25.60 0.25 -29.37 16 8 H 0.05 3.05 7.99 -2.91 -0.02 3.03 16 9 C 0.00 0.17 3.33 29.85 0.10 0.27 16 10 C -0.11 -3.99 5.64 29.85 0.17 -3.82 16 11 C 0.52 17.07 7.63 87.65 0.67 17.74 16 12 O -0.55 -22.32 13.16 -3.05 -0.04 -22.36 16 13 N -0.66 -16.40 5.18 -302.92 -1.57 -17.97 16 14 C 0.17 4.41 6.45 38.52 0.25 4.66 16 15 C -0.16 -4.52 8.70 22.41 0.20 -4.33 16 16 C -0.08 -1.56 9.94 22.03 0.22 -1.34 16 17 C -0.13 -2.28 9.79 22.29 0.22 -2.06 16 18 C -0.02 -0.47 5.75 -21.29 -0.12 -0.59 16 19 C -0.15 -2.19 9.88 22.40 0.22 -1.97 16 20 C 0.06 1.04 11.07 84.09 0.93 1.97 16 21 N -0.51 -11.03 10.30 -195.69 -2.02 -13.05 16 22 C 0.14 2.89 10.74 85.25 0.92 3.80 16 23 C -0.14 -3.29 5.75 -21.23 -0.12 -3.42 16 24 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 25 H 0.01 0.69 7.16 -2.39 -0.02 0.67 16 26 H 0.01 0.54 7.53 -2.39 -0.02 0.52 16 27 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 28 H 0.11 3.46 8.14 -2.38 -0.02 3.44 16 29 H 0.43 7.48 7.32 -92.71 -0.68 6.81 16 30 H 0.13 4.16 5.76 -2.91 -0.02 4.14 16 31 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.17 2.80 6.78 -2.91 -0.02 2.78 16 Total: -1.00 -74.28 299.96 3.30 -70.98 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.39 Total: 10.10 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 4.35 Total: -17.24 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -3.28 Total: -89.14 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.04 Total: -22.36 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.67 kcal Total: -74.28 3.30 -70.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555228577.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.044 kcal (2) G-P(sol) polarization free energy of solvation -74.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds