Wall clock time and date at job start Mon Mar 30 2020 00:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47360 * 2 1 4 4 C 1.50700 * 109.47233 * 120.00626 * 2 1 3 5 5 H 1.08003 * 120.00056 * 119.99988 * 4 2 1 6 6 C 1.37878 * 119.99880 * 299.99984 * 4 2 1 7 7 N 1.31510 * 119.99858 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00010 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47096 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47132 * 119.99864 * 8 6 4 11 11 H 1.48494 * 109.47008 * 239.99820 * 8 6 4 12 12 N 1.46506 * 109.46997 * 240.00414 * 2 1 3 13 13 C 1.34776 * 119.99838 * 85.00341 * 12 2 1 14 14 O 1.21551 * 120.00053 * 359.97438 * 13 12 2 15 15 C 1.47843 * 119.99575 * 180.02562 * 13 12 2 16 16 C 1.40032 * 120.55504 * 179.97438 * 15 13 12 17 17 C 1.38354 * 118.28571 * 180.27118 * 16 15 13 18 18 C 1.38359 * 119.30215 * 359.47656 * 17 16 15 19 19 C 1.50702 * 119.45486 * 180.27698 * 18 17 16 20 20 F 1.39896 * 109.47286 * 300.25037 * 19 18 17 21 21 F 1.39895 * 109.47242 * 60.25679 * 19 18 17 22 22 N 1.31920 * 121.08002 * 0.53593 * 18 17 16 23 23 C 1.31695 * 121.87834 * 359.74022 * 22 18 17 24 24 H 1.09001 * 109.47237 * 59.99735 * 1 2 3 25 25 H 1.09005 * 109.46953 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47474 * 299.99232 * 1 2 3 27 27 H 0.97006 * 120.00086 * 179.97438 * 7 6 4 28 28 H 0.97003 * 120.00057 * 264.99546 * 12 2 1 29 29 H 1.08002 * 120.85383 * 359.97438 * 16 15 13 30 30 H 1.07999 * 120.34869 * 179.74392 * 17 16 15 31 31 H 1.09009 * 109.46646 * 180.26045 * 19 18 17 32 32 H 1.08004 * 119.71630 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 0.9436 0.8299 2.6034 8 14 2.3225 -1.1199 4.0078 9 1 3.1474 -2.2866 3.6035 10 1 3.1472 -0.1862 4.8159 11 1 1.1679 -1.5870 4.8163 12 7 2.0183 -0.6906 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8576 1.1612 -2.4117 15 6 2.6393 -0.7151 -3.5645 16 6 2.7770 -0.0280 -4.7768 17 6 3.2364 -0.7276 -5.8784 18 6 3.5524 -2.0681 -5.7458 19 6 4.0591 -2.8319 -6.9420 20 9 3.0979 -2.7986 -7.9579 21 9 5.2438 -2.2467 -7.4014 22 7 3.4127 -2.6896 -4.5906 23 6 2.9741 -2.0686 -3.5152 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.7089 1.1611 3.4845 28 1 2.2490 -1.6317 -1.1528 29 1 2.5265 1.0200 -4.8510 30 1 3.3513 -0.2316 -6.8309 31 1 4.2512 -3.8666 -6.6576 32 1 2.8727 -2.6117 -2.5872 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594258875.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:27 Heat of formation + Delta-G solvation = -125.897887 kcal Electronic energy + Delta-G solvation = -19712.633217 eV Core-core repulsion = 16114.979101 eV Total energy + Delta-G solvation = -3597.654116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.09546 -48.08387 -41.77932 -40.13679 -36.83692 -34.58389 -33.94513 -33.26608 -30.90206 -28.12831 -27.34221 -25.01712 -24.47999 -22.83084 -21.44816 -19.72292 -18.80181 -18.71291 -18.33242 -17.76614 -17.47119 -16.83617 -16.22808 -16.12326 -15.84118 -15.29000 -15.12786 -14.71628 -14.52522 -14.45097 -14.41163 -14.27174 -13.73722 -13.53684 -13.01239 -12.90493 -12.76364 -12.37183 -12.29071 -12.12422 -11.32624 -11.18070 -11.10217 -10.73470 -10.60915 -10.53314 -9.85849 -8.18490 -6.35944 -0.73753 -0.03202 1.45755 1.47369 1.58830 1.69095 2.13825 2.26044 2.48163 2.57179 3.12562 3.13065 3.25271 3.57723 3.61417 3.75097 3.88781 3.94795 4.13623 4.40380 4.66936 4.75976 4.89166 4.91444 5.06499 5.21865 5.38787 5.54251 5.65014 5.85201 6.06858 6.43211 6.69919 6.79583 7.25077 7.40716 8.88134 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.037010 B = 0.003697 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.379287 B = 7570.884155 C = 7997.255391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.269 3.731 3 H 0.004 0.996 4 C -0.547 4.547 5 H 0.077 0.923 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.972 3.028 9 H -0.258 1.258 10 H -0.285 1.285 11 H -0.279 1.279 12 N -0.692 5.692 13 C 0.546 3.454 14 O -0.587 6.587 15 C -0.168 4.168 16 C -0.023 4.023 17 C -0.135 4.135 18 C 0.057 3.943 19 C 0.330 3.670 20 F -0.197 7.197 21 F -0.197 7.197 22 N -0.464 5.464 23 C 0.140 3.860 24 H 0.013 0.987 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.266 0.734 28 H 0.406 0.594 29 H 0.155 0.845 30 H 0.172 0.828 31 H 0.163 0.837 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.657 -9.343 -16.594 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.022 0.978 4 C -0.585 4.585 5 H 0.095 0.905 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.797 3.203 9 H -0.182 1.182 10 H -0.211 1.211 11 H -0.205 1.205 12 N -0.340 5.340 13 C 0.332 3.668 14 O -0.469 6.469 15 C -0.173 4.173 16 C -0.050 4.050 17 C -0.155 4.155 18 C -0.081 4.081 19 C 0.276 3.724 20 F -0.178 7.178 21 F -0.178 7.178 22 N -0.172 5.172 23 C -0.019 4.019 24 H 0.032 0.968 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.243 0.757 29 H 0.173 0.827 30 H 0.189 0.811 31 H 0.180 0.820 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 5.586 -9.287 -16.446 19.695 hybrid contribution -0.135 0.793 0.940 1.237 sum 5.450 -8.494 -15.506 18.501 Atomic orbital electron populations 1.21918 0.97995 0.99746 0.99776 1.18457 0.91334 0.92157 0.81453 0.97812 1.21564 1.32696 1.13699 0.90566 0.90493 1.25776 0.94813 0.95534 1.02303 1.70051 1.36946 1.23892 1.24622 0.85289 0.78074 0.78547 0.78389 1.18201 1.21126 1.20519 1.46235 1.64092 1.14296 1.09425 1.18488 0.78128 0.86351 0.83834 1.90727 1.53095 1.17462 1.85651 1.21177 1.04402 0.96676 0.95067 1.21913 0.91263 1.01514 0.90274 1.22129 0.98161 0.94380 1.00829 1.22105 0.98511 0.93008 0.94520 1.20275 0.73228 0.99200 0.79687 1.93030 1.64766 1.97716 1.62282 1.93030 1.47724 1.87239 1.89828 1.67314 1.12514 1.38855 0.98556 1.23236 0.91164 0.90134 0.97332 0.96784 0.93810 0.91290 0.92512 0.75708 0.82713 0.81095 0.82042 0.79477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.66 9.26 71.98 0.67 -5.99 16 2 C 0.27 13.47 2.56 44.24 0.11 13.59 16 3 H 0.00 0.24 7.58 -2.39 -0.02 0.22 16 4 C -0.55 -27.87 8.73 25.60 0.22 -27.64 16 5 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.02 0.84 5.30 84.66 0.45 1.28 16 7 N -0.92 -51.34 11.32 21.45 0.24 -51.10 16 8 Si 0.97 40.80 29.54 68.60 2.03 42.83 16 9 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 10 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 12 N -0.69 -27.36 5.02 -448.98 -2.26 -29.62 16 13 C 0.55 21.20 7.75 86.79 0.67 21.87 16 14 O -0.59 -27.83 16.08 -3.88 -0.06 -27.89 16 15 C -0.17 -4.88 5.89 -19.99 -0.12 -5.00 16 16 C -0.02 -0.58 9.72 22.73 0.22 -0.36 16 17 C -0.14 -2.73 9.60 22.33 0.21 -2.52 16 18 C 0.06 1.16 6.28 42.57 0.27 1.43 16 19 C 0.33 5.11 5.53 71.24 0.39 5.50 16 20 F -0.20 -3.43 17.24 44.97 0.78 -2.65 16 21 F -0.20 -3.46 17.25 44.97 0.78 -2.69 16 22 N -0.46 -10.41 10.23 -182.82 -1.87 -12.28 16 23 C 0.14 3.37 10.71 85.02 0.91 4.28 16 24 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 26 H 0.07 3.73 6.07 -2.39 -0.01 3.71 16 27 H 0.27 14.06 8.31 -92.70 -0.77 13.29 16 28 H 0.41 13.02 6.61 -92.71 -0.61 12.41 16 29 H 0.16 3.86 7.74 -2.91 -0.02 3.83 16 30 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 31 H 0.16 1.62 8.10 -2.38 -0.02 1.60 16 32 H 0.19 3.69 6.42 -2.91 -0.02 3.68 16 Total: -1.00 -65.39 292.25 4.21 -61.18 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.56 Total: 15.79 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 4.01 Total: 6.44 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -3.88 Total: -93.00 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.06 Total: -27.89 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 1.55 Total: -5.34 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -65.39 4.21 -61.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594258875.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.717 kcal (2) G-P(sol) polarization free energy of solvation -65.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds