Wall clock time and date at job start Mon Mar 30 2020 01:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00296 * 2 1 4 4 C 1.50700 * 109.47384 * 269.99970 * 3 2 1 5 5 H 1.08001 * 119.99757 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00254 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99968 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00201 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47142 * 90.00278 * 8 6 4 10 10 H 1.48508 * 109.47472 * 210.00134 * 8 6 4 11 11 H 1.48501 * 109.47212 * 330.00363 * 8 6 4 12 12 C 1.34776 * 120.00158 * 180.02562 * 2 1 3 13 13 O 1.21554 * 120.00265 * 184.80880 * 12 2 1 14 14 C 1.47842 * 119.99696 * 4.80118 * 12 2 1 15 15 C 1.40025 * 120.55999 * 321.82422 * 14 12 2 16 16 C 1.38354 * 118.28689 * 179.70223 * 15 14 12 17 17 C 1.38356 * 119.30710 * 0.27632 * 16 15 14 18 18 C 1.50698 * 119.46337 * 179.97438 * 17 16 15 19 19 F 1.39898 * 109.47046 * 210.00264 * 18 17 16 20 20 F 1.39900 * 109.47102 * 330.00417 * 18 17 16 21 21 N 1.31931 * 121.07399 * 359.97438 * 17 16 15 22 22 C 1.31685 * 121.88256 * 0.02562 * 21 17 16 23 23 H 1.09000 * 109.47188 * 264.87569 * 1 2 3 24 24 H 1.09003 * 109.46658 * 24.87694 * 1 2 3 25 25 H 1.08999 * 109.47221 * 144.87267 * 1 2 3 26 26 H 1.09007 * 109.46957 * 30.00210 * 3 2 1 27 27 H 1.09003 * 109.47223 * 150.00006 * 3 2 1 28 28 H 0.97006 * 120.00026 * 179.97438 * 7 6 4 29 29 H 1.07999 * 120.85439 * 359.97438 * 15 14 12 30 30 H 1.08001 * 120.34931 * 180.25481 * 16 15 14 31 31 H 1.09004 * 109.46875 * 90.00234 * 18 17 16 32 32 H 1.08002 * 119.71751 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0982 1.0958 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5535 3.6180 -0.6731 8 14 3.4381 3.4168 -3.4338 9 1 2.3080 4.2592 -3.9014 10 1 4.6982 4.2003 -3.4960 11 1 3.5562 2.2195 -4.3044 12 6 2.1389 -1.1672 -0.0005 13 8 3.3512 -1.1691 0.0877 14 6 1.4035 -2.4452 -0.1083 15 6 0.1760 -2.6174 0.5430 16 6 -0.4749 -3.8304 0.4052 17 6 0.1049 -4.8271 -0.3596 18 6 -0.6007 -6.1499 -0.5116 19 9 0.3454 -7.1659 -0.6845 20 9 -1.3586 -6.4087 0.6354 21 7 1.2655 -4.6381 -0.9578 22 6 1.9233 -3.5018 -0.8568 23 1 -0.3633 -0.0918 1.0236 24 1 -0.3633 0.9324 -0.4323 25 1 -0.3633 -0.8405 -0.5913 26 1 1.6085 2.0284 0.5139 27 1 3.1500 1.1383 0.5138 28 1 4.0304 4.4439 -0.8503 29 1 -0.2538 -1.8222 1.1341 30 1 -1.4255 -3.9978 0.8897 31 1 -1.2577 -6.1135 -1.3807 32 1 2.8708 -3.3849 -1.3617 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594259367.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:02 Heat of formation + Delta-G solvation = -111.167834 kcal Electronic energy + Delta-G solvation = -19980.827071 eV Core-core repulsion = 16383.811698 eV Total energy + Delta-G solvation = -3597.015373 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.99899 -48.02032 -41.85266 -40.10600 -36.82645 -35.00495 -33.81250 -33.23247 -29.93501 -28.43730 -27.33575 -25.55224 -24.47572 -23.54722 -20.86888 -18.90062 -18.71311 -18.57337 -18.48288 -18.18847 -17.41544 -16.96666 -16.37016 -16.19370 -15.82422 -15.18457 -15.00830 -14.84885 -14.61214 -14.36129 -14.31289 -13.98438 -13.77135 -13.61184 -13.45087 -13.00055 -12.83980 -12.54815 -12.34180 -12.24288 -11.76390 -11.21932 -11.02931 -10.65810 -10.62142 -10.36132 -9.54402 -8.25231 -6.40208 -0.58748 0.02058 1.36595 1.39610 1.49320 1.63966 2.11572 2.29523 2.39284 2.57353 3.05190 3.11839 3.21123 3.44565 3.66184 3.77093 3.91553 4.05554 4.11514 4.31081 4.51703 4.58135 4.72430 4.86959 4.90234 4.97496 5.19276 5.30784 5.49002 5.75711 6.01010 6.50245 6.59485 6.68722 7.15535 7.33233 8.82091 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.036739 B = 0.003982 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.957321 B = 7029.756301 C = 7261.182409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.596 5.596 3 C 0.257 3.743 4 C -0.547 4.547 5 H 0.054 0.946 6 C 0.011 3.989 7 N -0.926 5.926 8 Si 0.967 3.033 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.274 1.274 12 C 0.544 3.456 13 O -0.587 6.587 14 C -0.166 4.166 15 C -0.040 4.040 16 C -0.129 4.129 17 C 0.050 3.950 18 C 0.329 3.671 19 F -0.204 7.204 20 F -0.193 7.193 21 N -0.476 5.476 22 C 0.142 3.858 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.034 0.966 27 H 0.002 0.998 28 H 0.268 0.732 29 H 0.181 0.819 30 H 0.191 0.809 31 H 0.176 0.824 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.735 -15.647 1.094 22.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.325 5.325 3 C 0.136 3.864 4 C -0.586 4.586 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.565 5.565 8 Si 0.791 3.209 9 H -0.187 1.187 10 H -0.207 1.207 11 H -0.199 1.199 12 C 0.331 3.669 13 O -0.469 6.469 14 C -0.171 4.171 15 C -0.066 4.066 16 C -0.149 4.149 17 C -0.089 4.089 18 C 0.275 3.725 19 F -0.185 7.185 20 F -0.175 7.175 21 N -0.185 5.185 22 C -0.016 4.016 23 H 0.107 0.893 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.052 0.948 27 H 0.021 0.979 28 H 0.077 0.923 29 H 0.198 0.802 30 H 0.208 0.792 31 H 0.193 0.807 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.688 -16.155 0.719 21.846 hybrid contribution 0.654 1.316 -0.180 1.480 sum -14.034 -14.839 0.539 20.431 Atomic orbital electron populations 1.22365 0.77696 1.04342 1.02934 1.48078 1.08632 1.06008 1.69816 1.18890 0.91453 0.79723 0.96315 1.21681 1.37281 1.06717 0.92907 0.92818 1.25823 0.94752 0.96363 1.01913 1.70042 1.38703 1.14783 1.33020 0.85424 0.78136 0.78220 0.79090 1.18695 1.20664 1.19866 1.18586 0.86751 0.84394 0.77136 1.90745 1.15980 1.87824 1.52345 1.21036 0.97983 0.95051 1.03016 1.22470 0.90768 0.98696 0.94658 1.22168 1.03025 0.91665 0.97996 1.22403 0.92880 0.97530 0.96079 1.20492 0.83725 0.79873 0.88387 1.93007 1.67585 1.62240 1.95709 1.93019 1.75885 1.94365 1.54190 1.67366 1.07661 1.22853 1.20632 1.22759 0.98394 0.86400 0.94078 0.89337 0.90648 0.89547 0.94849 0.97936 0.92285 0.80166 0.79174 0.80695 0.82404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.81 8.87 127.77 1.13 2.95 16 2 N -0.60 -24.31 2.86 -854.57 -2.44 -26.75 16 3 C 0.26 13.46 5.17 85.63 0.44 13.90 16 4 C -0.55 -30.84 9.39 25.60 0.24 -30.60 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.62 5.46 84.65 0.46 1.08 16 7 N -0.93 -54.93 13.29 21.45 0.28 -54.65 16 8 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 9 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 C 0.54 22.74 7.38 86.79 0.64 23.38 16 13 O -0.59 -30.79 16.46 -3.89 -0.06 -30.85 16 14 C -0.17 -5.09 5.27 -19.99 -0.11 -5.20 16 15 C -0.04 -0.82 7.69 22.73 0.17 -0.65 16 16 C -0.13 -2.06 9.42 22.33 0.21 -1.85 16 17 C 0.05 1.02 6.58 42.57 0.28 1.30 16 18 C 0.33 4.88 5.72 71.24 0.41 5.29 16 19 F -0.20 -4.42 17.05 44.97 0.77 -3.65 16 20 F -0.19 -2.86 16.45 44.97 0.74 -2.12 16 21 N -0.48 -13.03 9.94 -182.82 -1.82 -14.84 16 22 C 0.14 4.38 10.80 85.03 0.92 5.30 16 23 H 0.09 1.69 6.87 -2.39 -0.02 1.67 16 24 H 0.07 2.11 8.03 -2.39 -0.02 2.09 16 25 H 0.09 1.86 5.83 -2.39 -0.01 1.84 16 26 H 0.03 1.74 8.07 -2.38 -0.02 1.72 16 27 H 0.00 0.15 7.36 -2.39 -0.02 0.13 16 28 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 29 H 0.18 2.72 5.29 -2.91 -0.02 2.71 16 30 H 0.19 1.48 7.59 -2.91 -0.02 1.45 16 31 H 0.18 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.16 5.15 8.05 -2.91 -0.02 5.13 16 Total: -1.00 -76.41 290.01 5.46 -70.94 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: 1.16 Total: 0.91 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 4.81 Total: 14.91 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -3.97 Total: -96.24 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.06 Total: -30.85 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 1.51 Total: -5.76 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -76.41 5.46 -70.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594259367.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.223 kcal (2) G-P(sol) polarization free energy of solvation -76.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds