Wall clock time and date at job start Mon Mar 30 2020 01:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99775 * 2 1 4 4 O 1.20828 * 120.00140 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99753 * 179.97438 * 3 2 1 6 6 N 1.46492 * 109.47110 * 180.02562 * 5 3 2 7 7 C 1.36933 * 120.00206 * 262.95009 * 6 5 3 8 8 H 1.08006 * 120.00629 * 143.02556 * 7 6 5 9 9 C 1.38818 * 119.99742 * 323.01885 * 7 6 5 10 10 N 1.31615 * 120.00006 * 156.08064 * 9 7 6 11 11 Si 1.86795 * 119.99954 * 336.07773 * 9 7 6 12 12 H 1.48508 * 109.46859 * 95.20082 * 11 9 7 13 13 H 1.48496 * 109.47415 * 215.19737 * 11 9 7 14 14 H 1.48500 * 109.47386 * 335.20740 * 11 9 7 15 15 C 1.46503 * 119.99987 * 82.94590 * 6 5 3 16 16 C 1.50700 * 109.47144 * 90.00133 * 15 6 5 17 17 C 1.35277 * 126.71121 * 89.94777 * 16 15 6 18 18 C 1.41929 * 103.95820 * 180.02562 * 17 16 15 19 19 O 1.35709 * 126.87203 * 180.26135 * 18 17 16 20 20 C 1.42902 * 116.99405 * 179.70830 * 19 18 17 21 21 N 1.30615 * 106.24617 * 359.97438 * 18 17 16 22 22 O 1.20914 * 111.49673 * 0.02562 * 21 18 17 23 23 H 1.08997 * 109.47035 * 300.00293 * 1 2 3 24 24 H 1.09011 * 109.47019 * 59.99693 * 1 2 3 25 25 H 1.08990 * 109.47219 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46744 * 60.00470 * 5 3 2 27 27 H 1.08996 * 109.46849 * 300.00276 * 5 3 2 28 28 H 0.97002 * 120.00192 * 180.02562 * 10 9 7 29 29 H 1.08995 * 109.47245 * 330.00215 * 15 6 5 30 30 H 1.09005 * 109.47032 * 209.99852 * 15 6 5 31 31 H 1.07997 * 128.01468 * 0.04400 * 17 16 15 32 32 H 1.08997 * 109.47526 * 60.00632 * 20 19 18 33 33 H 1.09010 * 109.47013 * 180.02562 * 20 19 18 34 34 H 1.09000 * 109.47762 * 299.99933 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.3159 3.2953 -1.1755 8 1 4.0517 4.3299 -1.3378 9 6 4.9944 2.5896 -2.1598 10 7 4.9124 2.9700 -3.4171 11 14 6.0237 1.1004 -1.6997 12 1 5.2159 -0.1333 -1.8761 13 1 7.2216 1.0370 -2.5750 14 1 6.4517 1.2131 -0.2822 15 6 4.0395 3.4260 1.2604 16 6 5.4115 3.2821 1.8671 17 6 6.4783 4.0862 1.6541 18 6 7.5027 3.5147 2.4532 19 8 8.7764 3.9633 2.5874 20 6 9.6358 3.2249 3.4582 21 7 6.9722 2.4744 3.0383 22 8 5.8135 2.3319 2.7235 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.9564 0.7807 -0.8892 27 1 3.9557 0.7809 0.8908 28 1 5.3862 2.4767 -4.1049 29 1 3.2938 3.0320 1.9509 30 1 3.8360 4.4795 1.0681 31 1 6.5367 4.9604 1.0227 32 1 9.7228 2.1994 3.0991 33 1 10.6219 3.6892 3.4750 34 1 9.2183 3.2231 4.4651 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595340583.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:56 Heat of formation + Delta-G solvation = -21.535717 kcal Electronic energy + Delta-G solvation = -21188.014466 eV Core-core repulsion = 17705.973349 eV Total energy + Delta-G solvation = -3482.041117 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.31686 -39.72819 -38.54211 -36.63840 -35.37189 -32.83715 -32.13750 -31.17375 -28.71490 -27.53817 -26.68200 -26.09449 -22.87477 -22.39675 -20.89520 -20.27808 -17.50337 -17.47666 -17.19120 -16.89196 -16.32164 -16.04665 -15.63370 -15.26226 -15.01188 -14.84968 -14.27194 -13.57822 -13.41067 -13.00781 -12.75824 -12.69235 -12.19924 -12.10820 -11.71455 -11.66907 -11.60615 -11.26107 -10.80729 -10.55056 -10.41495 -10.28146 -9.89788 -9.76825 -9.05785 -8.87940 -8.72870 -7.36656 -6.26003 -3.71435 1.95010 2.76049 2.94190 3.07108 3.13262 3.26793 3.34725 3.39247 3.74844 4.27975 4.66187 4.70227 5.08382 5.16521 5.19145 5.33574 5.39985 5.45538 5.49276 5.55359 5.56218 5.77741 5.81534 5.89582 6.05034 6.24426 6.28298 6.40527 6.96062 7.28703 7.64197 8.08133 8.43675 8.65440 8.72673 9.37885 9.68040 10.87386 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018612 B = 0.006814 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.076908 B = 4107.960372 C = 4863.649443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.374 6.374 3 C 0.432 3.568 4 O -0.495 6.495 5 C 0.137 3.863 6 N -0.558 5.558 7 C -0.281 4.281 8 H 0.091 0.909 9 C 0.048 3.952 10 N -0.877 5.877 11 Si 0.858 3.142 12 H -0.278 1.278 13 H -0.292 1.292 14 H -0.263 1.263 15 C 0.220 3.780 16 C -0.005 4.005 17 C -0.227 4.227 18 C 0.201 3.799 19 O -0.287 6.287 20 C 0.034 3.966 21 N -0.426 5.426 22 O 0.085 5.915 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.269 0.731 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.175 0.825 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.297 -2.972 10.663 11.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.291 6.291 3 C 0.272 3.728 4 O -0.380 6.380 5 C 0.008 3.992 6 N -0.277 5.277 7 C -0.409 4.409 8 H 0.109 0.891 9 C -0.156 4.156 10 N -0.515 5.515 11 Si 0.686 3.314 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.187 1.187 15 C 0.092 3.908 16 C -0.071 4.071 17 C -0.250 4.250 18 C 0.003 3.997 19 O -0.194 6.194 20 C -0.061 4.061 21 N -0.155 5.155 22 O 0.028 5.972 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.109 0.891 26 H 0.120 0.880 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.192 0.808 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.703 -3.333 11.165 11.673 hybrid contribution 0.646 -0.388 -0.441 0.873 sum 1.349 -3.721 10.724 11.431 Atomic orbital electron populations 1.23092 0.78293 1.02564 1.02006 1.86601 1.22219 1.35459 1.84856 1.26123 0.93884 0.80912 0.71913 1.90574 1.66763 1.36328 1.44315 1.21265 0.85527 0.88653 1.03741 1.43910 1.72211 1.08257 1.03280 1.18825 1.32858 0.99071 0.90129 0.89117 1.25478 0.96999 0.97933 0.95157 1.69867 1.41056 1.41144 0.99404 0.87216 0.81445 0.83113 0.79625 1.20512 1.21862 1.18710 1.19822 0.85144 0.99335 0.86456 1.26295 1.01529 0.87795 0.91520 1.21783 0.90029 1.06485 1.06696 1.22097 0.87404 0.92991 0.97168 1.86167 1.16719 1.51761 1.64741 1.22959 0.93142 0.96855 0.93179 1.73980 0.94835 1.20595 1.26094 1.84714 1.19158 1.44246 1.49126 0.92565 0.92373 0.89094 0.88010 0.89510 0.92092 0.90991 0.88049 0.80765 0.92626 0.88194 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 101.05 1.07 1.54 16 2 O -0.37 -6.60 10.57 -39.26 -0.41 -7.02 16 3 C 0.43 8.73 8.01 36.01 0.29 9.02 16 4 O -0.49 -11.05 16.10 -18.75 -0.30 -11.35 16 5 C 0.14 2.82 4.87 -5.20 -0.03 2.80 16 6 N -0.56 -12.30 1.58 -175.98 -0.28 -12.57 16 7 C -0.28 -7.26 9.90 -15.06 -0.15 -7.41 16 8 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 9 C 0.05 1.30 5.23 -17.43 -0.09 1.20 16 10 N -0.88 -25.26 13.97 55.49 0.78 -24.48 16 11 Si 0.86 20.74 25.15 -169.99 -4.28 16.46 16 12 H -0.28 -6.40 6.66 56.52 0.38 -6.02 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 14 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 15 C 0.22 4.01 6.15 -5.19 -0.03 3.98 16 16 C -0.01 -0.10 7.06 -35.36 -0.25 -0.35 16 17 C -0.23 -4.23 11.11 -39.22 -0.44 -4.66 16 18 C 0.20 3.78 8.01 -16.66 -0.13 3.64 16 19 O -0.29 -4.84 10.57 -18.83 -0.20 -5.04 16 20 C 0.03 0.42 10.73 101.05 1.08 1.51 16 21 N -0.43 -8.16 11.54 30.38 0.35 -7.81 16 22 O 0.08 1.61 11.19 17.06 0.19 1.80 16 23 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 24 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 25 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.10 2.27 3.69 -51.93 -0.19 2.08 16 27 H 0.09 1.56 8.12 -51.93 -0.42 1.14 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 30 H 0.10 1.74 8.04 -51.93 -0.42 1.32 16 31 H 0.17 3.02 8.06 -52.49 -0.42 2.59 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.91 8.14 -51.92 -0.42 0.48 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 304.33 15.07 4.59 4.59 Total: -1.00 -31.63 304.33 -2.23 -33.86 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -3.99 Total: 0.29 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 1.32 Total: 11.28 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.85 Total: -44.86 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.72 Total: -21.61 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.28 Total: 16.46 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.63 -2.23 -33.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595340583.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.325 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds