Wall clock time and date at job start Mon Mar 30 2020 01:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99775 * 2 1 4 4 O 1.20828 * 120.00140 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99753 * 179.97438 * 3 2 1 6 6 N 1.46492 * 109.47110 * 180.02562 * 5 3 2 7 7 C 1.36933 * 120.00206 * 262.95009 * 6 5 3 8 8 H 1.08006 * 120.00629 * 143.02556 * 7 6 5 9 9 C 1.38818 * 119.99742 * 323.01885 * 7 6 5 10 10 N 1.31615 * 120.00006 * 156.08064 * 9 7 6 11 11 Si 1.86795 * 119.99954 * 336.07773 * 9 7 6 12 12 H 1.48508 * 109.46859 * 95.20082 * 11 9 7 13 13 H 1.48496 * 109.47415 * 215.19737 * 11 9 7 14 14 H 1.48500 * 109.47386 * 335.20740 * 11 9 7 15 15 C 1.46503 * 119.99987 * 82.94590 * 6 5 3 16 16 C 1.50700 * 109.47144 * 90.00133 * 15 6 5 17 17 C 1.35277 * 126.71121 * 89.94777 * 16 15 6 18 18 C 1.41929 * 103.95820 * 180.02562 * 17 16 15 19 19 O 1.35709 * 126.87203 * 180.26135 * 18 17 16 20 20 C 1.42902 * 116.99405 * 179.70830 * 19 18 17 21 21 N 1.30615 * 106.24617 * 359.97438 * 18 17 16 22 22 O 1.20914 * 111.49673 * 0.02562 * 21 18 17 23 23 H 1.08997 * 109.47035 * 300.00293 * 1 2 3 24 24 H 1.09011 * 109.47019 * 59.99693 * 1 2 3 25 25 H 1.08990 * 109.47219 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46744 * 60.00470 * 5 3 2 27 27 H 1.08996 * 109.46849 * 300.00276 * 5 3 2 28 28 H 0.97002 * 120.00192 * 180.02562 * 10 9 7 29 29 H 1.08995 * 109.47245 * 330.00215 * 15 6 5 30 30 H 1.09005 * 109.47032 * 209.99852 * 15 6 5 31 31 H 1.07997 * 128.01468 * 0.04400 * 17 16 15 32 32 H 1.08997 * 109.47526 * 60.00632 * 20 19 18 33 33 H 1.09010 * 109.47013 * 180.02562 * 20 19 18 34 34 H 1.09000 * 109.47762 * 299.99933 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.3159 3.2953 -1.1755 8 1 4.0517 4.3299 -1.3378 9 6 4.9944 2.5896 -2.1598 10 7 4.9124 2.9700 -3.4171 11 14 6.0237 1.1004 -1.6997 12 1 5.2159 -0.1333 -1.8761 13 1 7.2216 1.0370 -2.5750 14 1 6.4517 1.2131 -0.2822 15 6 4.0395 3.4260 1.2604 16 6 5.4115 3.2821 1.8671 17 6 6.4783 4.0862 1.6541 18 6 7.5027 3.5147 2.4532 19 8 8.7764 3.9633 2.5874 20 6 9.6358 3.2249 3.4582 21 7 6.9722 2.4744 3.0383 22 8 5.8135 2.3319 2.7235 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.9564 0.7807 -0.8892 27 1 3.9557 0.7809 0.8908 28 1 5.3862 2.4767 -4.1049 29 1 3.2938 3.0320 1.9509 30 1 3.8360 4.4795 1.0681 31 1 6.5367 4.9604 1.0227 32 1 9.7228 2.1994 3.0991 33 1 10.6219 3.6892 3.4750 34 1 9.2183 3.2231 4.4651 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595340583.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:56 Heat of formation + Delta-G solvation = -43.978170 kcal Electronic energy + Delta-G solvation = -21188.987644 eV Core-core repulsion = 17705.973349 eV Total energy + Delta-G solvation = -3483.014295 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.77191 -41.25921 -39.80792 -38.24342 -36.95750 -34.44334 -33.84441 -32.78236 -30.20911 -28.71360 -27.99125 -27.71379 -24.35721 -24.07687 -22.33405 -21.80348 -19.24141 -18.98698 -18.70199 -18.41921 -17.69317 -17.56450 -17.13701 -16.77639 -16.48095 -16.13524 -15.82946 -15.11128 -15.02837 -14.51293 -14.45334 -14.14779 -13.83563 -13.34010 -13.16360 -12.95908 -12.81399 -12.80610 -12.59504 -12.22445 -11.96780 -11.84682 -11.65080 -11.44272 -10.81135 -10.44447 -10.22870 -9.19116 -8.30978 -5.74025 0.48213 1.22883 1.30301 1.33511 1.42208 1.47626 1.80856 1.87845 2.29000 2.31184 2.95189 3.21148 3.29475 3.97346 4.07130 4.13256 4.22596 4.23006 4.26610 4.34999 4.40664 4.41287 4.49858 4.57671 4.74648 4.81215 4.84395 4.98252 5.49512 5.76481 5.99656 6.10412 6.64342 6.98296 7.26835 7.40160 7.76282 8.87020 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018612 B = 0.006814 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.076908 B = 4107.960372 C = 4863.649443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.374 6.374 3 C 0.439 3.561 4 O -0.522 6.522 5 C 0.131 3.869 6 N -0.571 5.571 7 C -0.264 4.264 8 H 0.060 0.940 9 C 0.000 4.000 10 N -0.928 5.928 11 Si 0.915 3.085 12 H -0.260 1.260 13 H -0.304 1.304 14 H -0.262 1.262 15 C 0.223 3.777 16 C -0.003 4.003 17 C -0.238 4.238 18 C 0.197 3.803 19 O -0.298 6.298 20 C 0.027 3.973 21 N -0.432 5.432 22 O 0.083 5.917 23 H 0.064 0.936 24 H 0.050 0.950 25 H 0.131 0.869 26 H 0.087 0.913 27 H 0.118 0.882 28 H 0.268 0.732 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.181 0.819 32 H 0.051 0.949 33 H 0.136 0.864 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.329 -4.298 12.454 13.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C 0.279 3.721 4 O -0.410 6.410 5 C 0.003 3.997 6 N -0.291 5.291 7 C -0.393 4.393 8 H 0.078 0.922 9 C -0.199 4.199 10 N -0.569 5.569 11 Si 0.742 3.258 12 H -0.186 1.186 13 H -0.233 1.233 14 H -0.187 1.187 15 C 0.096 3.904 16 C -0.069 4.069 17 C -0.261 4.261 18 C -0.001 4.001 19 O -0.205 6.205 20 C -0.068 4.068 21 N -0.163 5.163 22 O 0.027 5.973 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.150 0.850 26 H 0.104 0.896 27 H 0.136 0.864 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.199 0.801 32 H 0.070 0.930 33 H 0.154 0.846 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.725 -4.691 13.000 13.839 hybrid contribution 0.568 0.040 -0.873 1.042 sum 1.294 -4.651 12.127 13.053 Atomic orbital electron populations 1.23470 0.75673 1.05324 1.02102 1.86549 1.24633 1.33698 1.84180 1.25769 0.93758 0.81204 0.71330 1.90568 1.67331 1.37339 1.45746 1.21281 0.86117 0.87850 1.04431 1.43909 1.72956 1.08834 1.03366 1.18659 1.31318 0.97892 0.91423 0.92211 1.25956 0.98321 1.00704 0.94934 1.69974 1.43111 1.43361 1.00453 0.86302 0.79579 0.81243 0.78677 1.18599 1.23256 1.18667 1.19884 0.85592 0.99527 0.85375 1.26165 1.01329 0.87800 0.91593 1.22026 0.90360 1.06910 1.06768 1.22271 0.88291 0.92721 0.96819 1.86171 1.16155 1.52508 1.65661 1.23301 0.93980 0.96813 0.92681 1.73962 0.94867 1.20921 1.26537 1.84693 1.19203 1.44204 1.49232 0.91693 0.93141 0.85045 0.89553 0.86400 0.92291 0.88463 0.87357 0.80123 0.93015 0.84580 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.56 113.37 1.20 1.87 16 2 O -0.37 -12.24 10.57 -51.41 -0.54 -12.78 16 3 C 0.44 16.92 8.01 71.24 0.57 17.49 16 4 O -0.52 -22.71 16.10 21.96 0.35 -22.35 16 5 C 0.13 5.16 4.87 85.64 0.42 5.58 16 6 N -0.57 -24.55 1.58 -710.69 -1.12 -25.68 16 7 C -0.26 -13.74 9.90 84.04 0.83 -12.91 16 8 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 9 C 0.00 0.00 5.23 84.86 0.44 0.44 16 10 N -0.93 -54.80 13.97 21.65 0.30 -54.50 16 11 Si 0.91 42.89 25.15 68.60 1.73 44.62 16 12 H -0.26 -11.28 6.66 99.48 0.66 -10.62 16 13 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 14 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 15 C 0.22 7.76 6.15 85.63 0.53 8.28 16 16 C 0.00 -0.10 7.06 25.00 0.18 0.08 16 17 C -0.24 -8.58 11.11 22.50 0.25 -8.33 16 18 C 0.20 7.09 8.01 85.79 0.69 7.78 16 19 O -0.30 -9.53 10.57 -90.30 -0.95 -10.49 16 20 C 0.03 0.60 10.73 113.37 1.22 1.82 16 21 N -0.43 -15.76 11.54 -172.61 -1.99 -17.75 16 22 O 0.08 2.99 11.19 71.21 0.80 3.79 16 23 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 24 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.09 3.70 3.69 -2.39 -0.01 3.69 16 27 H 0.12 3.87 8.12 -2.39 -0.02 3.85 16 28 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.10 2.90 8.07 -2.39 -0.02 2.88 16 30 H 0.11 3.60 8.04 -2.38 -0.02 3.59 16 31 H 0.18 6.15 8.06 -2.91 -0.02 6.13 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.14 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -67.98 304.33 5.96 -62.02 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 1.08 Total: 11.03 kcal Atomic # 6 Polarization: 15.78 SS G_CDS: 6.32 Total: 22.09 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -2.81 Total: -97.93 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -0.35 Total: -41.83 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.73 Total: 44.62 kcal Total: -67.98 5.96 -62.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595340583.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.042 kcal (2) G-P(sol) polarization free energy of solvation -67.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds