Wall clock time and date at job start Mon Mar 30 2020 01:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00182 * 2 1 4 4 H 1.48501 * 109.47060 * 264.99030 * 3 2 1 5 5 H 1.48498 * 109.47020 * 24.98454 * 3 2 1 6 6 H 1.48495 * 109.47065 * 144.98689 * 3 2 1 7 7 C 1.37874 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00332 * 7.47610 * 7 2 1 9 9 C 1.50702 * 120.00010 * 187.47776 * 7 2 1 10 10 C 1.53003 * 115.54811 * 90.97789 * 9 7 2 11 11 O 1.42904 * 109.47157 * 304.81226 * 10 9 7 12 12 C 1.35780 * 116.99942 * 179.51492 * 11 10 9 13 13 C 1.39928 * 119.59127 * 4.77269 * 12 11 10 14 14 C 1.36022 * 120.89183 * 179.71125 * 13 12 11 15 15 C 1.40361 * 119.70083 * 0.54890 * 14 13 12 16 16 C 1.40516 * 122.00537 * 179.72206 * 15 14 13 17 17 N 1.31842 * 118.38757 * 179.97438 * 16 15 14 18 18 C 1.32489 * 121.64722 * 0.02562 * 17 16 15 19 19 N 1.31143 * 122.82561 * 0.02562 * 18 17 16 20 20 C 1.33961 * 120.24549 * 359.97438 * 19 18 17 21 21 C 1.37757 * 119.59489 * 185.04145 * 12 11 10 22 22 C 1.53001 * 117.49881 * 305.27367 * 9 7 2 23 23 C 1.52999 * 117.49896 * 236.64831 * 9 7 2 24 24 H 0.97003 * 119.99725 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47360 * 64.81396 * 10 9 7 26 26 H 1.09000 * 109.46798 * 184.81410 * 10 9 7 27 27 H 1.07999 * 119.55162 * 0.02562 * 13 12 11 28 28 H 1.08000 * 120.15162 * 180.30557 * 14 13 12 29 29 H 1.08002 * 120.80852 * 0.02562 * 16 15 14 30 30 H 1.07999 * 118.59203 * 179.97438 * 18 17 16 31 31 H 1.08001 * 120.26978 * 359.97438 * 21 12 11 32 32 H 1.09001 * 117.49825 * 359.97438 * 22 9 7 33 33 H 1.08997 * 117.49761 * 145.01973 * 22 9 7 34 34 H 1.09006 * 117.49409 * 214.97856 * 23 9 7 35 35 H 1.08999 * 117.49828 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6026 1.9853 -1.3947 5 1 1.3977 2.6809 0.5914 6 1 3.4897 1.4730 0.8033 7 6 2.0044 -1.1940 0.0005 8 1 1.4713 -2.1255 -0.1207 9 6 3.5018 -1.1996 0.1704 10 6 4.0020 -1.3147 1.6118 11 8 3.4247 -0.2726 2.4010 12 6 3.7600 -0.2377 3.7163 13 6 4.7117 -1.1364 4.2109 14 6 5.0716 -1.1208 5.5225 15 6 4.4739 -0.1996 6.3967 16 6 4.8050 -0.1450 7.7612 17 7 4.1999 0.7492 8.5178 18 6 3.2985 1.5840 8.0217 19 7 2.9467 1.5815 6.7583 20 6 3.5026 0.7114 5.9048 21 6 3.1551 0.6784 4.5485 22 6 4.3258 -0.3485 -0.7979 23 6 4.3343 -1.8735 -0.9222 24 1 -0.4850 0.8401 -0.0004 25 1 3.7127 -2.2828 2.0206 26 1 5.0881 -1.2234 1.6278 27 1 5.1703 -1.8487 3.5410 28 1 5.8110 -1.8167 5.8904 29 1 5.5381 -0.8186 8.1800 30 1 2.8329 2.2966 8.6863 31 1 2.4188 1.3654 4.1582 32 1 3.7849 0.2151 -1.5581 33 1 5.2244 0.1297 -0.4082 34 1 5.2385 -2.3985 -0.6142 35 1 3.7988 -2.3132 -1.7637 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596270625.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:48 Heat of formation + Delta-G solvation = 62.874223 kcal Electronic energy + Delta-G solvation = -19826.828702 eV Core-core repulsion = 16791.589888 eV Total energy + Delta-G solvation = -3035.238813 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.24883 -39.35902 -37.12577 -35.82718 -34.09655 -32.09654 -30.55560 -30.42811 -27.15211 -25.47187 -24.85986 -23.58535 -22.36524 -21.83445 -19.40889 -18.69741 -18.01244 -17.01921 -16.48993 -16.39769 -15.39425 -15.10078 -14.81488 -14.53408 -14.29041 -13.79454 -13.62368 -13.06253 -13.01541 -12.61994 -12.54582 -12.09966 -11.50389 -11.24008 -11.15309 -10.94552 -10.76465 -10.66756 -10.35444 -10.22458 -9.45451 -9.21561 -9.19864 -8.74258 -8.71705 -8.45088 -7.98650 -6.10779 -4.16784 0.22803 0.79918 1.90236 2.99385 3.23675 3.44559 3.54552 3.60537 4.10945 4.11419 4.28976 4.40766 4.50243 4.60283 4.80284 4.83980 5.04229 5.12337 5.17141 5.45533 5.49821 5.71861 5.73697 5.79214 5.93795 5.97839 6.02522 6.09831 6.31411 6.34361 6.36758 6.54889 6.55125 6.84616 6.95212 7.05792 7.63747 7.82443 8.13270 8.43302 8.88856 9.53716 11.00161 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.025466 B = 0.005449 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.227291 B = 5137.201186 C = 5806.038908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.091 3.909 3 Si 0.883 3.117 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.244 1.244 7 C -0.497 4.497 8 H 0.077 0.923 9 C 0.000 4.000 10 C 0.094 3.906 11 O -0.269 6.269 12 C 0.185 3.815 13 C -0.190 4.190 14 C -0.041 4.041 15 C -0.206 4.206 16 C 0.206 3.794 17 N -0.547 5.547 18 C 0.299 3.701 19 N -0.512 5.512 20 C 0.198 3.802 21 C -0.167 4.167 22 C -0.202 4.202 23 C -0.169 4.169 24 H 0.265 0.735 25 H 0.063 0.937 26 H 0.042 0.958 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.171 0.829 30 H 0.192 0.808 31 H 0.146 0.854 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.317 -1.753 11.336 16.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.113 4.113 3 Si 0.712 3.288 4 H -0.213 1.213 5 H -0.226 1.226 6 H -0.168 1.168 7 C -0.534 4.534 8 H 0.095 0.905 9 C -0.001 4.001 10 C 0.019 3.981 11 O -0.179 6.179 12 C 0.133 3.867 13 C -0.209 4.209 14 C -0.062 4.062 15 C -0.210 4.210 16 C 0.027 3.973 17 N -0.261 5.261 18 C 0.010 3.990 19 N -0.226 5.226 20 C 0.072 3.928 21 C -0.188 4.188 22 C -0.239 4.239 23 C -0.206 4.206 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.158 0.842 28 H 0.156 0.844 29 H 0.188 0.812 30 H 0.209 0.791 31 H 0.164 0.836 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.454 -0.771 11.693 16.386 hybrid contribution 0.846 0.181 -0.606 1.056 sum 12.300 -0.590 11.086 16.569 Atomic orbital electron populations 1.69903 1.06594 1.27387 1.49011 1.24921 0.94446 0.99185 0.92760 0.86819 0.81222 0.82892 0.77854 1.21301 1.22596 1.16813 1.20097 0.86644 0.94826 1.51814 0.90472 1.19306 0.95114 1.00599 0.85127 1.22724 0.94247 0.88625 0.92472 1.86459 1.66125 1.50360 1.14963 1.19316 0.90236 0.91775 0.85384 1.21350 1.00528 1.01738 0.97235 1.20712 0.97226 0.95869 0.92376 1.19459 1.02960 1.01802 0.96812 1.23538 0.93097 0.92108 0.88532 1.68294 1.10793 1.06852 1.40209 1.24847 0.90116 0.94074 0.89971 1.68764 1.26718 1.22843 1.04302 1.18466 0.90894 0.90147 0.93342 1.19997 1.05270 1.03495 0.89994 1.23054 1.02000 0.93541 1.05337 1.22879 1.00831 0.94517 1.02360 0.92486 0.91885 0.93968 0.84243 0.84421 0.81227 0.79103 0.83623 0.89129 0.90655 0.90791 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.96 55.43 0.77 -26.39 16 2 C 0.09 2.59 5.44 -17.82 -0.10 2.49 16 3 Si 0.88 22.19 23.58 -169.99 -4.01 18.19 16 4 H -0.29 -7.02 6.89 56.52 0.39 -6.63 16 5 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 6 H -0.24 -5.84 5.58 56.52 0.32 -5.52 16 7 C -0.50 -13.50 9.21 -34.44 -0.32 -13.82 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 9 C 0.00 -0.01 1.41 -155.66 -0.22 -0.23 16 10 C 0.09 1.78 4.62 37.16 0.17 1.95 16 11 O -0.27 -5.66 7.42 -19.05 -0.14 -5.80 16 12 C 0.18 3.29 6.67 -39.12 -0.26 3.03 16 13 C -0.19 -2.60 8.95 -39.74 -0.36 -2.96 16 14 C -0.04 -0.47 9.79 -39.58 -0.39 -0.86 16 15 C -0.21 -2.76 5.74 -106.81 -0.61 -3.37 16 16 C 0.21 2.31 11.15 -16.69 -0.19 2.13 16 17 N -0.55 -6.99 10.39 -14.18 -0.15 -7.13 16 18 C 0.30 3.97 12.23 -92.11 -1.13 2.85 16 19 N -0.51 -8.31 10.45 -12.60 -0.13 -8.44 16 20 C 0.20 3.28 6.61 -84.83 -0.56 2.72 16 21 C -0.17 -3.05 9.97 -39.08 -0.39 -3.44 16 22 C -0.20 -4.10 7.16 -26.73 -0.19 -4.29 16 23 C -0.17 -3.11 9.95 -26.73 -0.27 -3.38 16 24 H 0.27 7.66 8.31 -40.82 -0.34 7.33 16 25 H 0.06 1.11 7.82 -51.93 -0.41 0.70 16 26 H 0.04 0.66 7.40 -51.93 -0.38 0.28 16 27 H 0.14 1.61 6.23 -52.49 -0.33 1.29 16 28 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.19 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.15 2.83 8.06 -52.49 -0.42 2.40 16 32 H 0.09 1.98 6.13 -51.93 -0.32 1.66 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 LS Contribution 294.90 15.07 4.44 4.44 Total: -1.00 -32.46 294.90 -8.06 -40.53 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -4.05 Total: 1.80 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -4.80 Total: -17.19 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.49 Total: -41.97 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.14 Total: -5.80 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.01 Total: 18.19 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.46 -8.06 -40.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596270625.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.399 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds