Wall clock time and date at job start Mon Mar 30 2020 01:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00182 * 2 1 4 4 H 1.48501 * 109.47060 * 264.99030 * 3 2 1 5 5 H 1.48498 * 109.47020 * 24.98454 * 3 2 1 6 6 H 1.48495 * 109.47065 * 144.98689 * 3 2 1 7 7 C 1.37874 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00332 * 7.47610 * 7 2 1 9 9 C 1.50702 * 120.00010 * 187.47776 * 7 2 1 10 10 C 1.53003 * 115.54811 * 90.97789 * 9 7 2 11 11 O 1.42904 * 109.47157 * 304.81226 * 10 9 7 12 12 C 1.35780 * 116.99942 * 179.51492 * 11 10 9 13 13 C 1.39928 * 119.59127 * 4.77269 * 12 11 10 14 14 C 1.36022 * 120.89183 * 179.71125 * 13 12 11 15 15 C 1.40361 * 119.70083 * 0.54890 * 14 13 12 16 16 C 1.40516 * 122.00537 * 179.72206 * 15 14 13 17 17 N 1.31842 * 118.38757 * 179.97438 * 16 15 14 18 18 C 1.32489 * 121.64722 * 0.02562 * 17 16 15 19 19 N 1.31143 * 122.82561 * 0.02562 * 18 17 16 20 20 C 1.33961 * 120.24549 * 359.97438 * 19 18 17 21 21 C 1.37757 * 119.59489 * 185.04145 * 12 11 10 22 22 C 1.53001 * 117.49881 * 305.27367 * 9 7 2 23 23 C 1.52999 * 117.49896 * 236.64831 * 9 7 2 24 24 H 0.97003 * 119.99725 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47360 * 64.81396 * 10 9 7 26 26 H 1.09000 * 109.46798 * 184.81410 * 10 9 7 27 27 H 1.07999 * 119.55162 * 0.02562 * 13 12 11 28 28 H 1.08000 * 120.15162 * 180.30557 * 14 13 12 29 29 H 1.08002 * 120.80852 * 0.02562 * 16 15 14 30 30 H 1.07999 * 118.59203 * 179.97438 * 18 17 16 31 31 H 1.08001 * 120.26978 * 359.97438 * 21 12 11 32 32 H 1.09001 * 117.49825 * 359.97438 * 22 9 7 33 33 H 1.08997 * 117.49761 * 145.01973 * 22 9 7 34 34 H 1.09006 * 117.49409 * 214.97856 * 23 9 7 35 35 H 1.08999 * 117.49828 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6026 1.9853 -1.3947 5 1 1.3977 2.6809 0.5914 6 1 3.4897 1.4730 0.8033 7 6 2.0044 -1.1940 0.0005 8 1 1.4713 -2.1255 -0.1207 9 6 3.5018 -1.1996 0.1704 10 6 4.0020 -1.3147 1.6118 11 8 3.4247 -0.2726 2.4010 12 6 3.7600 -0.2377 3.7163 13 6 4.7117 -1.1364 4.2109 14 6 5.0716 -1.1208 5.5225 15 6 4.4739 -0.1996 6.3967 16 6 4.8050 -0.1450 7.7612 17 7 4.1999 0.7492 8.5178 18 6 3.2985 1.5840 8.0217 19 7 2.9467 1.5815 6.7583 20 6 3.5026 0.7114 5.9048 21 6 3.1551 0.6784 4.5485 22 6 4.3258 -0.3485 -0.7979 23 6 4.3343 -1.8735 -0.9222 24 1 -0.4850 0.8401 -0.0004 25 1 3.7127 -2.2828 2.0206 26 1 5.0881 -1.2234 1.6278 27 1 5.1703 -1.8487 3.5410 28 1 5.8110 -1.8167 5.8904 29 1 5.5381 -0.8186 8.1800 30 1 2.8329 2.2966 8.6863 31 1 2.4188 1.3654 4.1582 32 1 3.7849 0.2151 -1.5581 33 1 5.2244 0.1297 -0.4082 34 1 5.2385 -2.3985 -0.6142 35 1 3.7988 -2.3132 -1.7637 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596270625.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:48 Heat of formation + Delta-G solvation = 41.364263 kcal Electronic energy + Delta-G solvation = -19827.761443 eV Core-core repulsion = 16791.589888 eV Total energy + Delta-G solvation = -3036.171555 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.29980 -40.66273 -38.56666 -37.10794 -35.12822 -34.24851 -31.69244 -31.47401 -28.64461 -27.40038 -25.89746 -24.72629 -23.43809 -23.35896 -21.05551 -19.96284 -19.13565 -18.46891 -17.93895 -17.55409 -16.95066 -16.59512 -16.24105 -15.82276 -15.44547 -15.05762 -14.79676 -14.53023 -14.41978 -14.06656 -13.98880 -13.41265 -13.03129 -12.92109 -12.67515 -12.19383 -12.12457 -12.07795 -11.83995 -11.74890 -11.35344 -11.00134 -10.67321 -10.26511 -10.22774 -9.75565 -9.24951 -8.32275 -6.38360 -0.74426 -0.29319 0.86917 1.27020 1.39689 1.54051 1.92665 2.18275 2.39518 3.04950 3.06400 3.17897 3.24515 3.36225 3.44978 3.61819 3.84416 4.01798 4.02417 4.22000 4.25209 4.35301 4.42853 4.53279 4.65075 4.70288 4.84720 4.90515 5.00406 5.04160 5.14718 5.29345 5.34121 5.45670 5.51845 5.67875 6.04515 6.23514 6.48271 6.72823 7.12875 7.35061 8.82778 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.025466 B = 0.005449 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.227291 B = 5137.201186 C = 5806.038908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.036 3.964 3 Si 0.937 3.063 4 H -0.275 1.275 5 H -0.319 1.319 6 H -0.222 1.222 7 C -0.488 4.488 8 H 0.035 0.965 9 C -0.039 4.039 10 C 0.098 3.902 11 O -0.313 6.313 12 C 0.172 3.828 13 C -0.202 4.202 14 C -0.006 4.006 15 C -0.217 4.217 16 C 0.225 3.775 17 N -0.556 5.556 18 C 0.302 3.698 19 N -0.557 5.557 20 C 0.177 3.823 21 C -0.209 4.209 22 C -0.204 4.204 23 C -0.139 4.139 24 H 0.262 0.738 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.168 0.832 28 H 0.198 0.802 29 H 0.226 0.774 30 H 0.218 0.782 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.120 -3.403 13.368 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.162 4.162 3 Si 0.764 3.236 4 H -0.202 1.202 5 H -0.248 1.248 6 H -0.145 1.145 7 C -0.526 4.526 8 H 0.053 0.947 9 C -0.040 4.040 10 C 0.024 3.976 11 O -0.224 6.224 12 C 0.121 3.879 13 C -0.220 4.220 14 C -0.026 4.026 15 C -0.221 4.221 16 C 0.047 3.953 17 N -0.271 5.271 18 C 0.014 3.986 19 N -0.273 5.273 20 C 0.051 3.949 21 C -0.229 4.229 22 C -0.241 4.241 23 C -0.175 4.175 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.185 0.815 28 H 0.215 0.785 29 H 0.242 0.758 30 H 0.235 0.765 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.123 0.877 34 H 0.140 0.860 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 16.295 -2.439 13.721 21.442 hybrid contribution -0.657 0.600 -1.112 1.424 sum 15.638 -1.840 12.609 20.172 Atomic orbital electron populations 1.70050 1.08447 1.27751 1.52581 1.25674 0.94872 1.02523 0.93147 0.85972 0.80588 0.78700 0.78290 1.20164 1.24769 1.14483 1.20391 0.90182 0.92674 1.49320 0.94720 1.19330 0.92145 1.04336 0.88148 1.22672 0.96431 0.88663 0.89855 1.86364 1.67663 1.51504 1.16876 1.19549 0.91481 0.92786 0.84074 1.21567 1.00046 1.01589 0.98847 1.21325 0.95992 0.94519 0.90795 1.19791 1.02331 1.01565 0.98452 1.24427 0.92354 0.91308 0.87225 1.68441 1.11006 1.07390 1.40266 1.25439 0.89653 0.94171 0.89341 1.68752 1.28549 1.24352 1.05621 1.18604 0.92212 0.91431 0.92646 1.19910 1.06513 1.04769 0.91745 1.23079 1.02215 0.94875 1.03941 1.22957 1.01188 0.93540 0.99863 0.92970 0.91130 0.89533 0.81463 0.78530 0.75784 0.76550 0.87430 0.91359 0.87695 0.85991 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.52 13.96 21.45 0.30 -61.22 16 2 C 0.04 2.14 5.44 84.65 0.46 2.60 16 3 Si 0.94 47.76 23.58 68.60 1.62 49.38 16 4 H -0.28 -13.33 6.89 99.48 0.69 -12.64 16 5 H -0.32 -17.09 7.11 99.48 0.71 -16.38 16 6 H -0.22 -10.43 5.58 99.48 0.55 -9.87 16 7 C -0.49 -27.48 9.21 25.60 0.24 -27.24 16 8 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 9 C -0.04 -1.64 1.41 -52.93 -0.07 -1.72 16 10 C 0.10 3.45 4.62 71.98 0.33 3.79 16 11 O -0.31 -13.10 7.42 -91.09 -0.68 -13.78 16 12 C 0.17 6.05 6.67 22.57 0.15 6.21 16 13 C -0.20 -4.80 8.95 22.16 0.20 -4.60 16 14 C -0.01 -0.11 9.79 22.27 0.22 0.10 16 15 C -0.22 -5.08 5.74 -21.28 -0.12 -5.21 16 16 C 0.22 3.96 11.15 85.25 0.95 4.91 16 17 N -0.56 -12.43 10.39 -198.79 -2.07 -14.50 16 18 C 0.30 7.67 12.23 180.87 2.21 9.89 16 19 N -0.56 -18.46 10.45 -193.78 -2.03 -20.48 16 20 C 0.18 5.88 6.61 40.18 0.27 6.15 16 21 C -0.21 -8.05 9.97 22.59 0.23 -7.82 16 22 C -0.20 -7.71 7.16 30.60 0.22 -7.50 16 23 C -0.14 -4.64 9.95 30.60 0.30 -4.34 16 24 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 25 H 0.07 2.30 7.82 -2.39 -0.02 2.29 16 26 H 0.09 2.27 7.40 -2.39 -0.02 2.25 16 27 H 0.17 2.95 6.23 -2.91 -0.02 2.93 16 28 H 0.20 1.15 8.06 -2.91 -0.02 1.12 16 29 H 0.23 1.38 8.06 -2.91 -0.02 1.35 16 30 H 0.22 3.94 8.06 -2.91 -0.02 3.91 16 31 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 32 H 0.07 2.88 6.13 -2.39 -0.01 2.87 16 33 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.12 2.97 8.14 -2.38 -0.02 2.95 16 35 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -79.65 294.90 3.66 -75.99 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.93 Total: 9.38 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 5.58 Total: -24.77 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -3.79 Total: -96.20 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.68 Total: -13.78 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 1.62 Total: 49.38 kcal Total: -79.65 3.66 -75.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596270625.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.353 kcal (2) G-P(sol) polarization free energy of solvation -79.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds