Wall clock time and date at job start Mon Mar 30 2020 01:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46510 * 109.47168 * 27.88780 * 3 2 1 5 5 C 1.36870 * 119.99849 * 252.36364 * 4 3 2 6 6 H 1.08003 * 120.00038 * 178.96269 * 5 4 3 7 7 C 1.39045 * 120.00267 * 358.96803 * 5 4 3 8 8 N 1.31364 * 120.00113 * 48.41576 * 7 5 4 9 9 Si 1.86796 * 119.99927 * 228.41491 * 7 5 4 10 10 H 1.48500 * 109.47136 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47343 * 120.00089 * 9 7 5 12 12 H 1.48501 * 109.46959 * 239.99797 * 9 7 5 13 13 C 1.34771 * 119.99570 * 72.36824 * 4 3 2 14 14 O 1.21589 * 119.99834 * 155.90292 * 13 4 3 15 15 C 1.47730 * 120.00217 * 336.17154 * 13 4 3 16 16 C 1.39644 * 120.14719 * 26.21940 * 15 13 4 17 17 C 1.37940 * 119.84557 * 179.69512 * 16 15 13 18 18 C 1.38384 * 120.14684 * 0.59506 * 17 16 15 19 19 C 1.50700 * 119.84257 * 179.69429 * 18 17 16 20 20 C 1.52999 * 117.50067 * 8.73267 * 19 18 17 21 21 C 1.52995 * 117.50449 * 300.07105 * 19 18 17 22 22 C 1.38371 * 120.30672 * 359.68116 * 18 17 16 23 23 C 1.37942 * 120.15247 * 0.02562 * 22 18 17 24 24 H 1.08997 * 109.47483 * 267.89109 * 3 2 1 25 25 H 1.09000 * 109.47377 * 147.89061 * 3 2 1 26 26 H 0.97001 * 120.00483 * 180.02562 * 8 7 5 27 27 H 1.07997 * 120.08268 * 359.97438 * 16 15 13 28 28 H 1.07999 * 119.92741 * 180.29469 * 17 16 15 29 29 H 1.09006 * 115.54644 * 154.39550 * 19 18 17 30 30 H 1.08994 * 117.50129 * 359.97438 * 20 19 18 31 31 H 1.09008 * 117.49722 * 145.01714 * 20 19 18 32 32 H 1.08996 * 117.49697 * 214.98044 * 21 19 18 33 33 H 1.09005 * 117.49703 * 359.97438 * 21 19 18 34 34 H 1.07996 * 119.92388 * 180.02562 * 22 18 17 35 35 H 1.07995 * 120.07664 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0968 -1.2200 -0.6461 5 6 3.6640 -2.2126 0.1066 6 1 4.0092 -3.1195 -0.3675 7 6 3.7957 -2.0534 1.4816 8 7 2.7714 -1.6475 2.1969 9 14 5.4291 -2.4168 2.3117 10 1 6.4155 -2.8561 1.2922 11 1 5.9257 -1.1903 2.9855 12 1 5.2445 -3.4938 3.3174 13 6 2.9882 -1.3654 -1.9815 14 8 3.7405 -2.1140 -2.5748 15 6 1.9589 -0.6107 -2.7254 16 6 1.4806 0.6024 -2.2257 17 6 0.5241 1.3051 -2.9286 18 6 0.0296 0.8044 -4.1201 19 6 -1.0203 1.5744 -4.8789 20 6 -1.3483 2.9879 -4.3938 21 6 -2.3466 1.8498 -4.1676 22 6 0.4949 -0.3998 -4.6181 23 6 1.4557 -1.1099 -3.9286 24 1 2.9713 0.0386 1.0269 25 1 2.9709 0.8713 -0.5462 26 1 2.8633 -1.5361 3.1561 27 1 1.8620 0.9919 -1.2934 28 1 0.1568 2.2458 -2.5457 29 1 -1.0539 1.3904 -5.9528 30 1 -0.8050 3.3608 -3.5256 31 1 -1.5981 3.7337 -5.1485 32 1 -3.2526 1.8473 -4.7734 33 1 -2.4599 1.4736 -3.1508 34 1 0.1050 -0.7846 -5.5488 35 1 1.8182 -2.0495 -4.3186 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597031315.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:00 Heat of formation + Delta-G solvation = 87.083153 kcal Electronic energy + Delta-G solvation = -20085.961044 eV Core-core repulsion = 17051.772008 eV Total energy + Delta-G solvation = -3034.189035 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.62272 -39.82746 -38.09918 -37.41034 -36.34881 -34.16389 -32.04644 -31.57145 -29.52841 -27.30915 -25.07913 -23.81202 -23.04198 -21.95288 -21.07226 -19.97016 -18.57596 -17.98860 -17.87924 -16.74739 -16.40152 -16.18279 -15.86139 -15.44437 -15.26809 -15.03320 -14.68955 -14.15401 -13.93308 -13.78956 -13.56408 -13.47615 -13.25591 -13.06376 -12.50087 -12.44042 -12.32951 -12.18625 -12.06826 -11.67960 -11.50221 -11.22622 -11.02402 -10.57400 -10.08194 -9.85473 -9.47243 -8.74272 -5.78342 -0.03766 0.40121 1.30397 1.51021 1.61422 1.69377 1.88964 1.97246 2.30465 2.58946 2.78271 2.99217 3.13728 3.26007 3.60455 3.76348 3.88947 3.97245 4.03494 4.15436 4.27724 4.33005 4.43639 4.57366 4.67746 4.79671 4.87115 4.98098 5.07725 5.14891 5.27110 5.37644 5.39797 5.44625 5.60536 5.91966 5.99509 6.32307 6.66150 7.02356 7.22263 7.81525 8.33190 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.032023 B = 0.005345 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.150319 B = 5237.299957 C = 5835.458894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.231 3.769 3 C 0.183 3.817 4 N -0.435 5.435 5 C -0.386 4.386 6 H 0.082 0.918 7 C 0.045 3.955 8 N -0.825 5.825 9 Si 0.953 3.047 10 H -0.277 1.277 11 H -0.252 1.252 12 H -0.279 1.279 13 C 0.473 3.527 14 O -0.614 6.614 15 C -0.133 4.133 16 C -0.140 4.140 17 C -0.121 4.121 18 C -0.045 4.045 19 C -0.127 4.127 20 C -0.166 4.166 21 C -0.170 4.170 22 C -0.118 4.118 23 C -0.090 4.090 24 H 0.139 0.861 25 H 0.141 0.859 26 H 0.289 0.711 27 H 0.161 0.839 28 H 0.141 0.859 29 H 0.131 0.869 30 H 0.095 0.905 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.152 0.848 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.381 11.391 -7.146 14.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.085 4.085 3 C 0.056 3.944 4 N -0.152 5.152 5 C -0.510 4.510 6 H 0.100 0.900 7 C -0.166 4.166 8 N -0.458 5.458 9 Si 0.775 3.225 10 H -0.202 1.202 11 H -0.176 1.176 12 H -0.205 1.205 13 C 0.266 3.734 14 O -0.501 6.501 15 C -0.137 4.137 16 C -0.158 4.158 17 C -0.139 4.139 18 C -0.046 4.046 19 C -0.145 4.145 20 C -0.202 4.202 21 C -0.207 4.207 22 C -0.136 4.136 23 C -0.109 4.109 24 H 0.157 0.843 25 H 0.158 0.842 26 H 0.100 0.900 27 H 0.178 0.822 28 H 0.158 0.842 29 H 0.149 0.851 30 H 0.114 0.886 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.096 0.904 34 H 0.169 0.831 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.762 11.052 -7.169 14.808 hybrid contribution 1.146 -0.904 0.719 1.627 sum -5.616 10.149 -6.449 13.271 Atomic orbital electron populations 1.81006 1.13795 1.08355 1.11894 1.29466 0.95889 0.92839 0.90330 1.20260 0.80447 0.89387 1.04258 1.43694 1.50986 1.15861 1.04656 1.19290 1.41208 1.00545 0.89981 0.90049 1.25724 0.99670 0.95746 0.95468 1.70388 1.28259 1.38403 1.08750 0.85597 0.80253 0.79101 0.77545 1.20222 1.17641 1.20457 1.18428 0.86767 0.85777 0.82407 1.90555 1.45706 1.45376 1.68488 1.20133 0.99400 0.97003 0.97152 1.22705 0.98017 0.94431 1.00646 1.21128 0.97118 1.00527 0.95109 1.19578 0.96062 0.94389 0.94535 1.21116 0.95276 0.98698 0.99394 1.23181 1.02325 0.90826 1.03909 1.23071 0.93307 1.02965 1.01383 1.21091 0.96875 0.94650 1.00948 1.21203 0.96511 0.99925 0.93270 0.84343 0.84197 0.89985 0.82237 0.84152 0.85076 0.88637 0.86185 0.86516 0.90405 0.83071 0.86419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.34 18.08 19.38 0.35 -19.98 16 2 C 0.23 9.53 11.15 89.44 1.00 10.53 16 3 C 0.18 7.18 4.88 84.57 0.41 7.59 16 4 N -0.43 -21.23 2.67 -650.93 -1.74 -22.97 16 5 C -0.39 -20.51 9.28 84.10 0.78 -19.73 16 6 H 0.08 4.80 7.60 -2.91 -0.02 4.78 16 7 C 0.04 2.11 4.39 84.96 0.37 2.49 16 8 N -0.83 -38.67 11.56 21.68 0.25 -38.42 16 9 Si 0.95 37.28 29.69 68.60 2.04 39.31 16 10 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 12 H -0.28 -10.78 7.11 99.48 0.71 -10.08 16 13 C 0.47 23.81 7.22 86.75 0.63 24.44 16 14 O -0.61 -35.23 16.50 -4.00 -0.07 -35.29 16 15 C -0.13 -5.60 5.53 -20.09 -0.11 -5.71 16 16 C -0.14 -4.96 6.23 22.54 0.14 -4.82 16 17 C -0.12 -3.65 9.28 22.23 0.21 -3.44 16 18 C -0.05 -1.26 5.62 -19.80 -0.11 -1.37 16 19 C -0.13 -2.58 6.03 -11.54 -0.07 -2.65 16 20 C -0.17 -2.79 9.86 30.62 0.30 -2.49 16 21 C -0.17 -3.22 10.16 30.62 0.31 -2.91 16 22 C -0.12 -3.54 9.72 22.23 0.22 -3.33 16 23 C -0.09 -3.42 9.60 22.54 0.22 -3.20 16 24 H 0.14 5.50 5.32 -2.39 -0.01 5.49 16 25 H 0.14 4.29 6.13 -2.39 -0.01 4.27 16 26 H 0.29 12.26 8.31 -92.71 -0.77 11.49 16 27 H 0.16 5.29 2.47 -5.33 -0.01 5.28 16 28 H 0.14 3.56 6.00 -2.91 -0.02 3.55 16 29 H 0.13 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.10 1.68 6.16 -2.39 -0.01 1.67 16 31 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 35 H 0.12 4.61 7.88 -2.91 -0.02 4.59 16 Total: -1.00 -65.81 299.27 6.25 -59.56 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 1.13 Total: 22.42 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 4.29 Total: -4.62 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -1.14 Total: -81.38 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.07 Total: -35.29 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.04 Total: 39.31 kcal Total: -65.81 6.25 -59.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597031315.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.640 kcal (2) G-P(sol) polarization free energy of solvation -65.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds