Wall clock time and date at job start Mon Mar 30 2020 01:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52999 * 115.55269 * 43.78653 * 3 2 1 5 5 N 1.46502 * 109.46812 * 34.32845 * 4 3 2 6 6 C 1.34778 * 119.99684 * 180.02562 * 5 4 3 7 7 O 1.21612 * 120.00354 * 0.02562 * 6 5 4 8 8 C 1.47430 * 119.99896 * 179.72120 * 6 5 4 9 9 C 1.39224 * 120.28201 * 354.43884 * 8 6 5 10 10 C 1.38227 * 120.09224 * 179.97438 * 9 8 6 11 11 C 1.38827 * 120.67287 * 0.02562 * 10 9 8 12 12 C 1.37590 * 120.57471 * 359.97438 * 11 10 9 13 13 C 1.40706 * 119.87957 * 359.70199 * 12 11 10 14 14 C 1.40892 * 120.32978 * 180.29965 * 13 12 11 15 15 H 1.08001 * 119.99992 * 146.08273 * 14 13 12 16 16 C 1.40278 * 120.00040 * 326.08409 * 14 13 12 17 17 N 1.30626 * 119.99470 * 350.69136 * 16 14 13 18 18 Si 1.86794 * 120.00092 * 170.68635 * 16 14 13 19 19 H 1.48500 * 109.47131 * 90.00087 * 18 16 14 20 20 H 1.48498 * 109.47036 * 210.00455 * 18 16 14 21 21 H 1.48503 * 109.47313 * 330.00055 * 18 16 14 22 22 C 1.52997 * 117.51503 * 189.48890 * 3 2 1 23 23 C 1.52998 * 60.00346 * 107.48057 * 22 3 2 24 24 H 1.09002 * 109.46842 * 274.33291 * 4 3 2 25 25 H 1.08992 * 109.47518 * 154.32817 * 4 3 2 26 26 H 0.97000 * 120.00344 * 0.02562 * 5 4 3 27 27 H 1.07995 * 119.95769 * 359.97438 * 9 8 6 28 28 H 1.07996 * 119.66046 * 179.97438 * 10 9 8 29 29 H 1.08001 * 119.71143 * 179.97438 * 11 10 9 30 30 H 1.08004 * 120.06104 * 179.97438 * 12 11 10 31 31 H 0.97004 * 119.99289 * 180.02562 * 17 16 14 32 32 H 1.09005 * 117.49971 * 214.97157 * 22 3 2 33 33 H 1.09002 * 117.50381 * 359.97438 * 22 3 2 34 34 H 1.09004 * 117.49861 * 252.51170 * 23 22 3 35 35 H 1.09004 * 117.52196 * 107.47835 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2684 -0.9955 -0.9552 5 7 2.4500 -1.1301 -2.1628 6 6 2.8381 -1.9606 -3.1508 7 8 3.8675 -2.5986 -3.0396 8 6 2.0114 -2.1007 -4.3634 9 6 0.7736 -1.4688 -4.4460 10 6 0.0019 -1.6024 -5.5850 11 6 0.4470 -2.3645 -6.6567 12 6 1.6658 -3.0008 -6.6046 13 6 2.4737 -2.8754 -5.4594 14 6 3.7262 -3.5178 -5.3984 15 1 4.5455 -3.0543 -4.8690 16 6 3.9089 -4.7593 -6.0253 17 7 2.8809 -5.4051 -6.5073 18 14 5.6223 -5.4888 -6.1709 19 1 5.9057 -6.3285 -4.9793 20 1 5.7020 -6.3246 -7.3958 21 1 6.6215 -4.3933 -6.2534 22 6 3.3142 1.3393 0.2237 23 6 3.3143 0.2805 1.3281 24 1 3.3555 -1.9654 -0.4653 25 1 4.2605 -0.6353 -1.2270 26 1 1.6287 -0.6215 -2.2513 27 1 0.4157 -0.8735 -3.6191 28 1 -0.9574 -1.1096 -5.6415 29 1 -0.1688 -2.4587 -7.5389 30 1 2.0038 -3.5920 -7.4429 31 1 3.0073 -6.2638 -6.9405 32 1 4.2494 1.5104 -0.3097 33 1 2.6889 2.2200 0.3705 34 1 2.6890 0.4644 2.2018 35 1 4.2493 -0.2455 1.5215 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601546212.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:10 Heat of formation + Delta-G solvation = 37.669570 kcal Electronic energy + Delta-G solvation = -19548.629579 eV Core-core repulsion = 16512.297810 eV Total energy + Delta-G solvation = -3036.331769 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.48348 -38.37099 -36.69042 -35.71751 -33.97020 -33.31581 -30.08430 -29.62367 -27.07043 -25.26649 -23.37187 -22.87206 -22.06086 -20.84179 -19.39988 -17.88218 -17.19724 -16.37928 -15.35582 -15.23276 -14.82489 -14.62764 -14.20852 -13.86659 -13.63400 -13.59173 -13.09604 -12.96355 -12.70339 -12.56359 -12.15747 -11.91124 -11.84413 -11.56434 -11.09807 -11.02267 -10.89521 -10.69074 -10.52548 -10.35912 -10.09130 -9.67851 -9.26170 -8.49623 -8.41455 -7.58666 -7.35821 -6.79551 -4.38580 2.35003 2.35715 2.60078 2.81908 3.10140 3.17052 3.23972 3.54932 3.58907 3.82054 3.97525 4.14280 4.35494 4.56644 4.67995 4.69253 5.26926 5.31845 5.51649 5.60829 5.71701 5.76330 5.80074 5.99908 6.15317 6.30683 6.60088 6.95475 7.01100 7.13386 7.22144 7.41834 7.46579 7.63208 7.88184 7.97660 8.17422 8.30708 8.65701 8.81954 8.89401 9.34950 10.15743 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.019561 B = 0.005513 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.093805 B = 5077.576258 C = 6251.632032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.238 3.762 3 C -0.065 4.065 4 C 0.169 3.831 5 N -0.752 5.752 6 C 0.567 3.433 7 O -0.536 6.536 8 C -0.263 4.263 9 C -0.057 4.057 10 C -0.245 4.245 11 C -0.095 4.095 12 C -0.147 4.147 13 C 0.146 3.854 14 C -0.415 4.415 15 H 0.105 0.895 16 C 0.069 3.931 17 N -0.792 5.792 18 Si 0.918 3.082 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.259 1.259 22 C -0.143 4.143 23 C -0.139 4.139 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.391 0.609 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.282 0.718 32 H 0.118 0.882 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.935 8.813 9.417 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.079 4.079 3 C -0.069 4.069 4 C 0.044 3.956 5 N -0.408 5.408 6 C 0.362 3.638 7 O -0.414 6.414 8 C -0.268 4.268 9 C -0.075 4.075 10 C -0.264 4.264 11 C -0.114 4.114 12 C -0.167 4.167 13 C 0.142 3.858 14 C -0.443 4.443 15 H 0.123 0.877 16 C -0.149 4.149 17 N -0.418 5.418 18 Si 0.743 3.257 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.183 1.183 22 C -0.181 4.181 23 C -0.178 4.178 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.226 0.774 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.093 0.907 32 H 0.136 0.864 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.898 8.100 9.371 12.531 hybrid contribution 0.350 -0.236 -0.083 0.430 sum 2.248 7.864 9.288 12.376 Atomic orbital electron populations 1.81282 1.12026 1.08211 1.08046 1.27641 0.93344 0.93400 0.93521 1.18733 0.82404 1.02653 1.03153 1.20679 0.93989 0.96858 0.84078 1.46086 1.27494 1.48476 1.18712 1.18402 0.85240 0.77827 0.82375 1.90678 1.25439 1.45239 1.80022 1.19419 0.97078 1.14918 0.95390 1.20637 0.93897 0.96929 0.96081 1.20285 1.00727 1.08910 0.96480 1.20802 0.96278 0.97306 0.96994 1.21360 0.95109 1.01538 0.98645 1.17472 0.92078 0.87746 0.88490 1.20153 0.97693 1.01472 1.25025 0.87707 1.26133 0.98932 0.97442 0.92430 1.69721 1.31767 1.12990 1.27289 0.86138 0.81998 0.79347 0.78237 1.19311 1.20336 1.18288 1.23323 1.02210 0.91218 1.01360 1.23200 1.02179 1.01554 0.90820 0.90649 0.89958 0.77436 0.89638 0.89131 0.89041 0.86391 0.90702 0.86385 0.87795 0.87667 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.55 18.54 42.15 0.78 -5.77 16 2 C 0.24 3.12 13.48 -20.76 -0.28 2.84 16 3 C -0.07 -0.66 2.44 -157.30 -0.38 -1.05 16 4 C 0.17 2.26 5.80 -4.04 -0.02 2.23 16 5 N -0.75 -13.25 5.29 -61.38 -0.32 -13.57 16 6 C 0.57 12.99 7.72 -12.52 -0.10 12.89 16 7 O -0.54 -13.64 13.60 5.27 0.07 -13.56 16 8 C -0.26 -6.51 5.92 -104.37 -0.62 -7.13 16 9 C -0.06 -1.26 9.52 -39.22 -0.37 -1.63 16 10 C -0.24 -5.40 10.03 -39.37 -0.39 -5.79 16 11 C -0.09 -2.18 10.01 -39.60 -0.40 -2.58 16 12 C -0.15 -3.77 8.62 -38.89 -0.34 -4.10 16 13 C 0.15 3.94 5.51 -106.54 -0.59 3.35 16 14 C -0.42 -11.33 7.67 -37.81 -0.29 -11.62 16 15 H 0.11 2.93 5.94 -52.49 -0.31 2.62 16 16 C 0.07 1.76 5.25 -17.30 -0.09 1.67 16 17 N -0.79 -20.57 11.13 55.56 0.62 -19.96 16 18 Si 0.92 19.47 29.57 -169.99 -5.03 14.44 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 21 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 22 C -0.14 -0.99 9.85 -26.73 -0.26 -1.25 16 23 C -0.14 -0.90 9.93 -26.73 -0.27 -1.17 16 24 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.08 1.02 7.90 -51.93 -0.41 0.61 16 26 H 0.39 6.55 5.29 -40.82 -0.22 6.34 16 27 H 0.09 1.67 6.44 -52.49 -0.34 1.34 16 28 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 30 H 0.12 3.06 6.58 -52.48 -0.35 2.72 16 31 H 0.28 6.65 8.29 -40.82 -0.34 6.31 16 32 H 0.12 0.70 8.05 -51.93 -0.42 0.28 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 308.36 15.07 4.65 4.65 Total: -1.00 -31.17 308.36 -7.34 -38.51 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -3.71 Total: 8.59 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -4.40 Total: -13.33 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 1.08 Total: -39.30 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.07 Total: -13.56 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.17 -7.34 -38.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601546212.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.178 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds