Wall clock time and date at job start Mon Mar 30 2020 01:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52999 * 115.55269 * 43.78653 * 3 2 1 5 5 N 1.46502 * 109.46812 * 34.32845 * 4 3 2 6 6 C 1.34778 * 119.99684 * 180.02562 * 5 4 3 7 7 O 1.21612 * 120.00354 * 0.02562 * 6 5 4 8 8 C 1.47430 * 119.99896 * 179.72120 * 6 5 4 9 9 C 1.39224 * 120.28201 * 354.43884 * 8 6 5 10 10 C 1.38227 * 120.09224 * 179.97438 * 9 8 6 11 11 C 1.38827 * 120.67287 * 0.02562 * 10 9 8 12 12 C 1.37590 * 120.57471 * 359.97438 * 11 10 9 13 13 C 1.40706 * 119.87957 * 359.70199 * 12 11 10 14 14 C 1.40892 * 120.32978 * 180.29965 * 13 12 11 15 15 H 1.08001 * 119.99992 * 146.08273 * 14 13 12 16 16 C 1.40278 * 120.00040 * 326.08409 * 14 13 12 17 17 N 1.30626 * 119.99470 * 350.69136 * 16 14 13 18 18 Si 1.86794 * 120.00092 * 170.68635 * 16 14 13 19 19 H 1.48500 * 109.47131 * 90.00087 * 18 16 14 20 20 H 1.48498 * 109.47036 * 210.00455 * 18 16 14 21 21 H 1.48503 * 109.47313 * 330.00055 * 18 16 14 22 22 C 1.52997 * 117.51503 * 189.48890 * 3 2 1 23 23 C 1.52998 * 60.00346 * 107.48057 * 22 3 2 24 24 H 1.09002 * 109.46842 * 274.33291 * 4 3 2 25 25 H 1.08992 * 109.47518 * 154.32817 * 4 3 2 26 26 H 0.97000 * 120.00344 * 0.02562 * 5 4 3 27 27 H 1.07995 * 119.95769 * 359.97438 * 9 8 6 28 28 H 1.07996 * 119.66046 * 179.97438 * 10 9 8 29 29 H 1.08001 * 119.71143 * 179.97438 * 11 10 9 30 30 H 1.08004 * 120.06104 * 179.97438 * 12 11 10 31 31 H 0.97004 * 119.99289 * 180.02562 * 17 16 14 32 32 H 1.09005 * 117.49971 * 214.97157 * 22 3 2 33 33 H 1.09002 * 117.50381 * 359.97438 * 22 3 2 34 34 H 1.09004 * 117.49861 * 252.51170 * 23 22 3 35 35 H 1.09004 * 117.52196 * 107.47835 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2684 -0.9955 -0.9552 5 7 2.4500 -1.1301 -2.1628 6 6 2.8381 -1.9606 -3.1508 7 8 3.8675 -2.5986 -3.0396 8 6 2.0114 -2.1007 -4.3634 9 6 0.7736 -1.4688 -4.4460 10 6 0.0019 -1.6024 -5.5850 11 6 0.4470 -2.3645 -6.6567 12 6 1.6658 -3.0008 -6.6046 13 6 2.4737 -2.8754 -5.4594 14 6 3.7262 -3.5178 -5.3984 15 1 4.5455 -3.0543 -4.8690 16 6 3.9089 -4.7593 -6.0253 17 7 2.8809 -5.4051 -6.5073 18 14 5.6223 -5.4888 -6.1709 19 1 5.9057 -6.3285 -4.9793 20 1 5.7020 -6.3246 -7.3958 21 1 6.6215 -4.3933 -6.2534 22 6 3.3142 1.3393 0.2237 23 6 3.3143 0.2805 1.3281 24 1 3.3555 -1.9654 -0.4653 25 1 4.2605 -0.6353 -1.2270 26 1 1.6287 -0.6215 -2.2513 27 1 0.4157 -0.8735 -3.6191 28 1 -0.9574 -1.1096 -5.6415 29 1 -0.1688 -2.4587 -7.5389 30 1 2.0038 -3.5920 -7.4429 31 1 3.0073 -6.2638 -6.9405 32 1 4.2494 1.5104 -0.3097 33 1 2.6889 2.2200 0.3705 34 1 2.6890 0.4644 2.2018 35 1 4.2493 -0.2455 1.5215 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601546212.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:09 Heat of formation + Delta-G solvation = 18.881310 kcal Electronic energy + Delta-G solvation = -19549.444299 eV Core-core repulsion = 16512.297810 eV Total energy + Delta-G solvation = -3037.146489 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.89654 -39.61277 -38.44350 -36.73584 -35.74495 -34.92025 -31.90324 -31.45171 -28.38497 -27.06617 -24.41590 -23.79646 -23.35704 -22.68280 -21.08340 -19.52869 -18.56788 -17.79815 -17.13335 -16.56427 -16.10676 -16.02125 -15.85289 -15.16503 -15.02954 -14.85934 -14.60579 -14.49151 -13.99927 -13.89997 -13.86356 -13.38853 -12.86948 -12.83605 -12.82060 -12.53535 -12.32516 -12.29971 -11.91943 -11.61411 -11.47292 -11.18454 -11.12558 -10.28707 -9.96356 -9.42989 -9.25987 -8.67175 -6.36394 0.49153 0.98956 1.36599 1.46400 1.49592 1.52395 1.59047 2.22601 2.32787 2.37751 2.72733 2.78895 2.94440 3.48921 3.70449 3.85358 3.95921 4.25421 4.31878 4.54140 4.67068 4.71280 4.78791 4.82259 4.91555 5.05265 5.06696 5.23138 5.26597 5.32547 5.58015 5.61199 5.79103 6.02003 6.08083 6.30996 6.42701 6.59439 6.75002 6.89348 6.97345 7.60685 8.30451 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.019561 B = 0.005513 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.093805 B = 5077.576258 C = 6251.632032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.256 3.744 3 C -0.092 4.092 4 C 0.167 3.833 5 N -0.737 5.737 6 C 0.563 3.437 7 O -0.569 6.569 8 C -0.283 4.283 9 C -0.058 4.058 10 C -0.240 4.240 11 C -0.092 4.092 12 C -0.174 4.174 13 C 0.116 3.884 14 C -0.452 4.452 15 H 0.087 0.913 16 C 0.030 3.970 17 N -0.823 5.823 18 Si 0.983 3.017 19 H -0.270 1.270 20 H -0.259 1.259 21 H -0.259 1.259 22 C -0.125 4.125 23 C -0.113 4.113 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.396 0.604 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.290 0.710 32 H 0.133 0.867 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.132 10.240 10.689 15.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.060 4.060 3 C -0.096 4.096 4 C 0.043 3.957 5 N -0.391 5.391 6 C 0.356 3.644 7 O -0.450 6.450 8 C -0.288 4.288 9 C -0.076 4.076 10 C -0.259 4.259 11 C -0.110 4.110 12 C -0.193 4.193 13 C 0.112 3.888 14 C -0.481 4.481 15 H 0.105 0.895 16 C -0.185 4.185 17 N -0.450 5.450 18 Si 0.804 3.196 19 H -0.195 1.195 20 H -0.183 1.183 21 H -0.183 1.183 22 C -0.163 4.163 23 C -0.151 4.151 24 H 0.086 0.914 25 H 0.113 0.887 26 H 0.232 0.768 27 H 0.132 0.868 28 H 0.144 0.856 29 H 0.139 0.861 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.151 0.849 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.064 9.566 10.668 14.476 hybrid contribution 0.173 -0.541 -0.386 0.687 sum 2.237 9.024 10.282 13.862 Atomic orbital electron populations 1.81294 1.13589 1.10054 1.09902 1.28161 0.93892 0.91893 0.92028 1.18739 0.80691 1.04635 1.05553 1.20890 0.94285 0.97811 0.82750 1.45913 1.27724 1.46599 1.18832 1.18294 0.84686 0.78344 0.83030 1.90651 1.26682 1.46832 1.80785 1.19843 0.98385 1.14682 0.95897 1.20943 0.92932 0.96529 0.97226 1.20741 1.01790 1.07781 0.95615 1.21153 0.95425 0.96050 0.98382 1.21329 0.96627 1.03138 0.98251 1.17863 0.92681 0.88640 0.89627 1.20155 0.97863 1.02965 1.27078 0.89483 1.26874 1.02648 0.97216 0.91760 1.69753 1.33405 1.13615 1.28188 0.85188 0.77233 0.78502 0.78657 1.19480 1.18325 1.18306 1.23519 1.02013 0.90047 1.00708 1.23431 1.02118 1.00065 0.89535 0.91380 0.88695 0.76845 0.86823 0.85588 0.86136 0.87846 0.89972 0.84913 0.86783 0.86451 0.84368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -14.29 18.54 20.01 0.37 -13.92 16 2 C 0.26 6.31 13.48 89.44 1.21 7.52 16 3 C -0.09 -1.63 2.44 -53.99 -0.13 -1.76 16 4 C 0.17 4.21 5.80 86.38 0.50 4.71 16 5 N -0.74 -25.44 5.29 -466.36 -2.47 -27.91 16 6 C 0.56 26.16 7.72 86.66 0.67 26.83 16 7 O -0.57 -29.82 13.60 -4.07 -0.06 -29.88 16 8 C -0.28 -14.21 5.92 -19.70 -0.12 -14.33 16 9 C -0.06 -2.50 9.52 22.50 0.21 -2.29 16 10 C -0.24 -10.08 10.03 22.41 0.22 -9.85 16 11 C -0.09 -4.12 10.01 22.26 0.22 -3.89 16 12 C -0.17 -9.13 8.62 22.72 0.20 -8.93 16 13 C 0.12 6.44 5.51 -21.11 -0.12 6.33 16 14 C -0.45 -25.80 7.67 23.42 0.18 -25.62 16 15 H 0.09 5.14 5.94 -2.91 -0.02 5.12 16 16 C 0.03 1.58 5.25 85.37 0.45 2.03 16 17 N -0.82 -44.13 11.13 21.88 0.24 -43.89 16 18 Si 0.98 40.96 29.57 68.60 2.03 42.99 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 22 C -0.12 -1.26 9.85 30.59 0.30 -0.96 16 23 C -0.11 -1.04 9.93 30.60 0.30 -0.74 16 24 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.10 2.19 7.90 -2.39 -0.02 2.17 16 26 H 0.40 12.80 5.29 -92.71 -0.49 12.31 16 27 H 0.11 4.21 6.44 -2.91 -0.02 4.19 16 28 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 29 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 30 H 0.10 5.61 6.58 -2.91 -0.02 5.59 16 31 H 0.29 13.99 8.29 -92.71 -0.77 13.22 16 32 H 0.13 1.02 8.05 -2.38 -0.02 1.00 16 33 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.14 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -71.05 308.36 4.87 -66.18 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.64 Total: 27.38 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 4.10 Total: -20.96 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -1.85 Total: -85.72 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.06 Total: -29.88 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -71.05 4.87 -66.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601546212.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.065 kcal (2) G-P(sol) polarization free energy of solvation -71.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds