Wall clock time and date at job start Mon Mar 30 2020 01:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00317 * 2 1 4 4 H 1.48509 * 109.46981 * 240.00269 * 3 2 1 5 5 H 1.48495 * 109.46879 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47226 * 120.00285 * 3 2 1 7 7 C 1.37885 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99924 * 165.71543 * 7 2 1 9 9 C 1.50699 * 119.99956 * 345.71128 * 7 2 1 10 10 C 1.52994 * 115.55077 * 294.54632 * 9 7 2 11 11 N 1.46903 * 109.47441 * 278.76695 * 10 9 7 12 12 C 1.46467 * 110.99816 * 75.37311 * 11 10 9 13 13 C 1.53249 * 109.79247 * 197.72731 * 12 11 10 14 14 S 1.81902 * 108.50712 * 298.03681 * 13 12 11 15 15 C 1.81899 * 101.91308 * 51.30828 * 14 13 12 16 16 C 1.46339 * 110.87920 * 201.36655 * 11 10 9 17 17 H 1.09003 * 109.42978 * 282.29269 * 16 11 10 18 18 C 1.50700 * 109.37549 * 42.12894 * 16 11 10 19 19 N 1.34775 * 119.99909 * 225.52196 * 18 16 11 20 20 O 1.21279 * 119.99615 * 45.52709 * 18 16 11 21 21 C 1.52996 * 117.51716 * 80.25043 * 9 7 2 22 22 C 1.53001 * 60.00406 * 107.48030 * 21 9 7 23 23 H 0.97000 * 120.00106 * 5.02884 * 1 2 3 24 24 H 1.09002 * 109.47038 * 158.76570 * 10 9 7 25 25 H 1.09006 * 109.47373 * 38.76847 * 10 9 7 26 26 H 1.09004 * 109.40117 * 77.65235 * 12 11 10 27 27 H 1.08998 * 109.40869 * 317.81074 * 12 11 10 28 28 H 1.09002 * 109.63258 * 57.74523 * 13 12 11 29 29 H 1.09007 * 109.62474 * 178.13602 * 13 12 11 30 30 H 1.08998 * 109.63201 * 68.39487 * 15 14 13 31 31 H 1.09000 * 109.63280 * 188.99128 * 15 14 13 32 32 H 0.97003 * 120.00335 * 0.02562 * 19 18 16 33 33 H 0.97002 * 119.99695 * 180.02562 * 19 18 16 34 34 H 1.09000 * 117.50091 * 214.96904 * 21 9 7 35 35 H 1.08997 * 117.49995 * 359.97438 * 21 9 7 36 36 H 1.08994 * 117.49815 * 252.51131 * 22 21 9 37 37 H 1.08993 * 117.49796 * 107.48424 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7463 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0595 -1.2085 -0.2313 9 6 1.2859 -2.4792 0.3210 10 6 0.7507 -2.5963 1.7495 11 7 1.8388 -3.0043 2.6482 12 6 2.7442 -1.8850 2.9180 13 6 4.0727 -2.4136 3.4696 14 16 3.7456 -3.2702 5.0406 15 6 2.4060 -4.4093 4.5754 16 6 1.3069 -3.6060 3.8715 17 1 0.9504 -2.8197 4.5370 18 6 0.1630 -4.5225 3.5215 19 7 -0.9784 -4.4791 4.2368 20 8 0.2696 -5.2991 2.5961 21 6 0.4671 -3.1297 -0.7958 22 6 1.7897 -3.7577 -0.3517 23 1 -0.4850 0.8368 -0.0736 24 1 -0.0442 -3.3415 1.7797 25 1 0.3569 -1.6318 2.0702 26 1 2.2878 -1.2184 3.6497 27 1 2.9281 -1.3371 1.9939 28 1 4.5135 -3.1109 2.7571 29 1 4.7562 -1.5813 3.6382 30 1 2.7921 -5.1720 3.8992 31 1 1.9990 -4.8808 5.4699 32 1 -1.0638 -3.8577 4.9768 33 1 -1.7146 -5.0693 4.0117 34 1 -0.4529 -3.6411 -0.5128 35 1 0.4477 -2.6280 -1.7632 36 1 2.6406 -3.6693 -1.0271 37 1 1.7398 -4.6822 0.2234 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602797291.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:24 Heat of formation + Delta-G solvation = -0.613842 kcal Electronic energy + Delta-G solvation = -19987.900205 eV Core-core repulsion = 17085.352294 eV Total energy + Delta-G solvation = -2902.547911 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.92171 -37.31300 -35.51964 -33.50875 -32.06497 -31.31203 -29.95720 -25.86543 -24.46011 -24.28669 -21.58624 -20.90058 -19.75811 -18.90069 -17.34191 -16.99130 -16.17709 -15.90722 -15.06710 -14.69923 -14.59618 -14.30937 -13.92360 -13.66524 -13.11090 -12.89962 -12.81121 -12.52972 -11.89486 -11.58479 -11.29806 -11.16751 -11.05348 -10.93419 -10.73295 -10.45845 -10.02943 -9.71007 -9.56787 -9.33334 -9.30977 -8.86344 -8.42142 -8.03604 -7.70745 -7.46015 -6.09691 -4.09709 1.96198 2.61036 2.85793 3.23257 3.29934 3.32201 3.62022 4.27667 4.33574 4.94554 5.07965 5.12406 5.16446 5.32949 5.46626 5.56936 5.71552 5.75240 5.91585 6.17839 6.32000 6.52125 6.61017 6.70331 6.85382 6.89574 6.95413 7.03851 7.22577 7.32164 7.45772 7.62492 7.74348 7.81013 7.91263 8.42731 8.48834 8.88450 9.49049 10.97154 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.008388 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.285906 B = 3337.122178 C = 4185.986885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.073 3.927 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.495 4.495 8 H 0.061 0.939 9 C 0.056 3.944 10 C 0.101 3.899 11 N -0.518 5.518 12 C 0.048 3.952 13 C -0.067 4.067 14 S -0.286 6.286 15 C -0.058 4.058 16 C 0.069 3.931 17 H 0.060 0.940 18 C 0.527 3.473 19 N -0.859 5.859 20 O -0.516 6.516 21 C -0.173 4.173 22 C -0.188 4.188 23 H 0.261 0.739 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.035 0.965 27 H 0.134 0.866 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.399 0.601 33 H 0.400 0.600 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.810 -4.903 10.672 11.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.532 4.532 8 H 0.079 0.921 9 C 0.056 3.944 10 C -0.025 4.025 11 N -0.244 5.244 12 C -0.081 4.081 13 C -0.215 4.215 14 S -0.059 6.059 15 C -0.207 4.207 16 C -0.045 4.045 17 H 0.077 0.923 18 C 0.309 3.691 19 N -0.424 5.424 20 O -0.390 6.390 21 C -0.212 4.212 22 C -0.226 4.226 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.152 0.848 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.227 0.773 33 H 0.230 0.770 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.695 -5.420 10.881 12.274 hybrid contribution -1.085 1.481 -0.475 1.897 sum 0.609 -3.938 10.406 11.143 Atomic orbital electron populations 1.70012 1.05972 1.26793 1.47972 1.25000 0.94672 0.98744 0.94710 0.86865 0.79969 0.83586 0.78948 1.20158 1.21330 1.19913 1.20421 0.95107 0.89571 1.48097 0.92081 1.18608 0.97641 0.90643 0.87549 1.21764 0.89920 0.97780 0.93082 1.61093 1.20134 1.32522 1.10655 1.22620 0.90211 0.91533 1.03693 1.23645 1.01264 1.02071 0.94563 1.86587 1.48327 1.49658 1.21351 1.23310 0.95449 0.99090 1.02891 1.21786 0.92438 0.95996 0.94311 0.92259 1.20369 0.83418 0.83626 0.81644 1.43956 1.17390 1.44201 1.36836 1.90773 1.81475 1.38807 1.27906 1.22672 0.92690 1.04637 1.01153 1.22717 0.96903 0.98229 1.04733 0.92918 0.92838 0.93668 0.94695 0.84810 0.88849 0.87949 0.88287 0.88184 0.77282 0.76953 0.92433 0.90592 0.91376 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.71 12.96 55.43 0.72 -22.99 16 2 C 0.07 1.89 5.16 -17.82 -0.09 1.80 16 3 Si 0.88 19.95 29.56 -169.99 -5.03 14.92 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.49 -12.71 6.25 -34.44 -0.22 -12.93 16 8 H 0.06 1.58 7.86 -52.48 -0.41 1.17 16 9 C 0.06 1.37 1.33 -155.66 -0.21 1.17 16 10 C 0.10 2.25 4.55 -3.83 -0.02 2.23 16 11 N -0.52 -9.87 4.09 -228.53 -0.93 -10.80 16 12 C 0.05 0.89 5.24 -3.93 -0.02 0.86 16 13 C -0.07 -1.04 6.69 37.29 0.25 -0.79 16 14 S -0.29 -4.19 22.40 -107.50 -2.41 -6.60 16 15 C -0.06 -0.82 5.95 37.29 0.22 -0.60 16 16 C 0.07 1.08 2.30 -69.04 -0.16 0.92 16 17 H 0.06 0.87 7.76 -51.93 -0.40 0.47 16 18 C 0.53 8.40 5.19 -10.99 -0.06 8.35 16 19 N -0.86 -9.60 8.87 31.22 0.28 -9.32 16 20 O -0.52 -10.36 16.62 5.56 0.09 -10.27 16 21 C -0.17 -4.24 9.88 -26.73 -0.26 -4.51 16 22 C -0.19 -4.39 9.90 -26.73 -0.26 -4.65 16 23 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 24 H 0.05 1.22 4.97 -51.93 -0.26 0.96 16 25 H 0.05 1.10 7.39 -51.93 -0.38 0.72 16 26 H 0.03 0.63 7.92 -51.93 -0.41 0.22 16 27 H 0.13 2.83 5.08 -51.93 -0.26 2.57 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 29 H 0.10 1.42 8.14 -51.92 -0.42 1.00 16 30 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.40 3.30 8.72 -40.82 -0.36 2.94 16 33 H 0.40 3.94 8.93 -40.82 -0.36 3.58 16 34 H 0.06 1.39 8.08 -51.93 -0.42 0.97 16 35 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 36 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 310.26 15.07 4.68 4.68 Total: -1.00 -29.46 310.26 -8.80 -38.26 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -5.37 Total: 10.29 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.83 Total: -8.16 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.06 Total: -43.12 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Atomic # 16 Polarization: -4.19 SS G_CDS: -2.41 Total: -6.60 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.46 -8.80 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602797291.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.643 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds