Wall clock time and date at job start Mon Mar 30 2020 01:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48503 * 109.47310 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47513 * 300.00178 * 3 2 1 6 6 H 1.48499 * 109.47163 * 60.00387 * 3 2 1 7 7 C 1.37870 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00144 * 175.39411 * 7 2 1 9 9 C 1.50694 * 120.00087 * 355.39056 * 7 2 1 10 10 C 1.53001 * 115.55117 * 278.82275 * 9 7 2 11 11 N 1.46898 * 109.47142 * 307.62830 * 10 9 7 12 12 C 1.46463 * 110.99990 * 76.20223 * 11 10 9 13 13 C 1.53253 * 109.86109 * 162.23612 * 12 11 10 14 14 S 1.81901 * 108.50754 * 62.00079 * 13 12 11 15 15 C 1.81899 * 101.91365 * 308.69762 * 14 13 12 16 16 C 1.46469 * 110.99873 * 310.21752 * 11 10 9 17 17 H 1.09005 * 109.40340 * 77.72984 * 16 11 10 18 18 C 1.50697 * 109.40943 * 317.88691 * 16 11 10 19 19 N 1.34775 * 119.99892 * 153.30565 * 18 16 11 20 20 O 1.21283 * 120.00006 * 333.30362 * 18 16 11 21 21 C 1.53005 * 117.50005 * 133.11474 * 9 7 2 22 22 C 1.52997 * 59.99907 * 252.50862 * 21 9 7 23 23 H 0.96994 * 119.99873 * 185.23549 * 1 2 3 24 24 H 1.08994 * 109.47315 * 67.62992 * 10 9 7 25 25 H 1.09000 * 109.47060 * 187.63057 * 10 9 7 26 26 H 1.09007 * 109.40400 * 282.34941 * 12 11 10 27 27 H 1.08997 * 109.40864 * 42.11217 * 12 11 10 28 28 H 1.08998 * 109.62814 * 302.29788 * 13 12 11 29 29 H 1.08995 * 109.63137 * 181.70904 * 13 12 11 30 30 H 1.08999 * 109.63302 * 291.59895 * 15 14 13 31 31 H 1.09003 * 109.79667 * 171.10572 * 15 14 13 32 32 H 0.96997 * 120.00672 * 359.97438 * 19 18 16 33 33 H 0.97003 * 119.99883 * 179.97438 * 19 18 16 34 34 H 1.09005 * 117.49475 * 359.97438 * 21 9 7 35 35 H 1.09004 * 117.49897 * 145.01962 * 21 9 7 36 36 H 1.09001 * 117.50217 * 252.50083 * 22 21 9 37 37 H 1.09008 * 117.49665 * 107.48594 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0820 -1.1955 -0.0756 9 6 1.2548 -2.4970 0.1038 10 6 0.8383 -2.9074 1.5176 11 7 2.0102 -2.8729 2.4027 12 6 2.3568 -1.4957 2.7612 13 6 3.2641 -1.4918 3.9963 14 16 4.8015 -2.3734 3.5861 15 6 4.1676 -3.9322 2.8953 16 6 3.1359 -3.6001 1.8118 17 1 3.6037 -2.9823 1.0451 18 6 2.6351 -4.8776 1.1888 19 7 3.3069 -5.4352 0.1621 20 8 1.6275 -5.4040 1.6113 21 6 1.6363 -3.6117 -0.8723 22 6 0.3127 -2.8639 -1.0446 23 1 -0.4849 -0.8365 0.0766 24 1 0.0821 -2.2157 1.8889 25 1 0.4282 -3.9171 1.4970 26 1 2.8779 -1.0248 1.9276 27 1 1.4461 -0.9380 2.9791 28 1 2.7616 -1.9965 4.8214 29 1 3.4951 -0.4645 4.2778 30 1 3.6947 -4.5169 3.6842 31 1 4.9872 -4.5025 2.4580 32 1 4.1126 -5.0140 -0.1762 33 1 2.9848 -6.2577 -0.2387 34 1 2.4294 -3.4024 -1.5902 35 1 1.5908 -4.6378 -0.5072 36 1 -0.6036 -3.3979 -0.7930 37 1 0.2353 -2.1627 -1.8756 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602797295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:26 Heat of formation + Delta-G solvation = -8.476240 kcal Electronic energy + Delta-G solvation = -20684.843917 eV Core-core repulsion = 17781.955067 eV Total energy + Delta-G solvation = -2902.888850 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.78128 -38.87034 -37.21260 -34.84076 -33.95873 -32.51518 -31.35172 -27.24466 -26.31401 -25.52576 -23.12243 -22.88793 -21.70425 -20.64119 -18.78544 -18.28561 -18.01613 -17.13292 -16.51115 -16.40988 -15.81891 -15.63930 -15.39099 -15.10885 -14.85602 -14.46360 -14.35202 -13.98727 -13.85207 -13.15188 -12.84039 -12.76822 -12.53951 -12.33063 -12.29173 -12.06754 -11.94484 -11.45626 -11.05562 -10.73645 -10.52684 -10.47882 -10.30633 -10.12139 -9.16220 -8.63565 -8.48219 -6.17895 0.81009 1.41218 1.54665 1.58885 1.70039 1.74635 2.52639 2.56690 3.00906 3.26429 3.29856 3.79933 3.98576 4.05210 4.14665 4.23365 4.29708 4.37767 4.42925 4.46960 4.54474 4.74503 4.78223 4.83716 4.91436 5.02400 5.08874 5.29989 5.41067 5.49263 5.90150 6.00912 6.14843 6.21209 6.31138 6.50377 6.72735 7.37852 7.56663 8.89999 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.016236 B = 0.011201 C = 0.007765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.107907 B = 2499.091777 C = 3604.973753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.009 4.009 3 Si 1.093 2.907 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.555 4.555 8 H 0.049 0.951 9 C -0.021 4.021 10 C 0.091 3.909 11 N -0.515 5.515 12 C 0.056 3.944 13 C -0.071 4.071 14 S -0.267 6.267 15 C -0.059 4.059 16 C 0.074 3.926 17 H 0.078 0.922 18 C 0.543 3.457 19 N -0.835 5.835 20 O -0.571 6.571 21 C -0.181 4.181 22 C -0.195 4.195 23 H 0.265 0.735 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.415 0.585 33 H 0.410 0.590 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.448 -7.197 3.242 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.210 4.210 3 Si 0.917 3.083 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.593 4.593 8 H 0.067 0.933 9 C -0.023 4.023 10 C -0.037 4.037 11 N -0.239 5.239 12 C -0.073 4.073 13 C -0.220 4.220 14 S -0.040 6.040 15 C -0.208 4.208 16 C -0.040 4.040 17 H 0.095 0.905 18 C 0.327 3.673 19 N -0.401 5.401 20 O -0.450 6.450 21 C -0.218 4.218 22 C -0.233 4.233 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.137 0.863 30 H 0.107 0.893 31 H 0.151 0.849 32 H 0.245 0.755 33 H 0.242 0.758 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.083 0.917 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.598 -5.644 4.181 12.714 hybrid contribution -1.342 -1.481 -1.454 2.471 sum 9.256 -7.125 2.727 11.995 Atomic orbital electron populations 1.70755 1.07895 1.31174 1.47060 1.26648 0.96381 1.04808 0.93127 0.83246 0.75087 0.72856 0.77099 1.19084 1.21767 1.20700 1.21285 0.93223 0.90359 1.54409 0.93268 1.19947 0.99139 0.94646 0.88567 1.21861 0.91533 0.99528 0.90743 1.61502 1.04731 1.15130 1.42487 1.22380 0.99059 0.89193 0.96678 1.23631 0.94553 1.03416 1.00400 1.86555 1.15629 1.19795 1.81995 1.23414 1.00454 0.97019 0.99957 1.21682 0.92695 0.93365 0.96215 0.90459 1.20113 0.82688 0.85225 0.79242 1.43795 1.31134 1.29889 1.35249 1.90658 1.25996 1.64236 1.64146 1.23527 0.97321 0.96877 1.04048 1.22606 0.93463 1.03848 1.03409 0.92382 0.94716 0.90911 0.90734 0.92512 0.89140 0.86331 0.89258 0.84920 0.75454 0.75762 0.89874 0.87836 0.91715 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.21 13.54 21.45 0.29 -52.92 16 2 C -0.01 -0.45 5.33 84.65 0.45 0.01 16 3 Si 1.09 47.16 29.91 68.60 2.05 49.22 16 4 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.56 -27.15 4.80 25.60 0.12 -27.03 16 8 H 0.05 2.42 6.99 -2.91 -0.02 2.40 16 9 C -0.02 -0.96 0.27 -52.93 -0.01 -0.97 16 10 C 0.09 4.12 4.97 86.30 0.43 4.54 16 11 N -0.52 -20.05 4.35 -876.62 -3.82 -23.87 16 12 C 0.06 2.16 4.46 86.47 0.39 2.54 16 13 C -0.07 -2.18 6.69 72.07 0.48 -1.70 16 14 S -0.27 -7.64 22.40 -56.49 -1.27 -8.91 16 15 C -0.06 -1.60 5.95 72.07 0.43 -1.17 16 16 C 0.07 2.43 1.49 44.34 0.07 2.50 16 17 H 0.08 2.75 6.23 -2.38 -0.01 2.74 16 18 C 0.54 17.19 3.54 87.66 0.31 17.50 16 19 N -0.84 -18.12 6.77 -173.53 -1.17 -19.30 16 20 O -0.57 -22.53 14.48 -3.04 -0.04 -22.58 16 21 C -0.18 -7.09 7.32 30.59 0.22 -6.87 16 22 C -0.19 -8.97 8.56 30.59 0.26 -8.71 16 23 H 0.27 15.46 6.20 -92.71 -0.57 14.89 16 24 H 0.03 1.74 7.50 -2.39 -0.02 1.72 16 25 H 0.07 3.41 5.42 -2.39 -0.01 3.39 16 26 H 0.07 3.18 5.06 -2.38 -0.01 3.16 16 27 H 0.06 2.42 7.67 -2.39 -0.02 2.40 16 28 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.41 6.88 8.83 -92.71 -0.82 6.07 16 33 H 0.41 7.51 8.90 -92.71 -0.82 6.69 16 34 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 35 H 0.10 3.73 4.28 -2.39 -0.01 3.72 16 36 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.06 2.91 8.14 -2.38 -0.02 2.89 16 Total: -1.00 -62.51 290.21 -1.15 -63.66 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.34 Total: 34.05 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 3.15 Total: -19.36 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -4.70 Total: -96.09 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.04 Total: -22.58 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.05 Total: 49.22 kcal Atomic # 16 Polarization: -7.64 SS G_CDS: -1.27 Total: -8.91 kcal Total: -62.51 -1.15 -63.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602797295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.184 kcal (2) G-P(sol) polarization free energy of solvation -62.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds