Wall clock time and date at job start Mon Mar 30 2020 01:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31397 * 1 3 3 Si 1.86798 * 119.99648 * 2 1 4 4 H 1.48497 * 109.47411 * 269.55378 * 3 2 1 5 5 H 1.48500 * 109.47541 * 29.55923 * 3 2 1 6 6 H 1.48506 * 109.47284 * 149.55662 * 3 2 1 7 7 C 1.39006 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00044 * 2.77226 * 7 2 1 9 9 N 1.36872 * 120.00059 * 182.77549 * 7 2 1 10 10 C 1.34776 * 120.00258 * 185.05002 * 9 7 2 11 11 O 1.21745 * 120.00079 * 354.83620 * 10 9 7 12 12 C 1.46549 * 120.00523 * 174.83473 * 10 9 7 13 13 C 1.37999 * 126.23741 * 5.24723 * 12 10 9 14 14 C 1.39803 * 107.08471 * 180.18764 * 13 12 10 15 15 C 1.35488 * 107.87775 * 359.57429 * 14 13 12 16 16 N 1.35587 * 108.88113 * 0.26370 * 15 14 13 17 17 C 1.46502 * 125.68165 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47182 * 266.34613 * 17 16 15 19 19 C 1.38235 * 119.99936 * 263.43641 * 18 17 16 20 20 C 1.38237 * 120.00182 * 179.76689 * 19 18 17 21 21 C 1.38232 * 119.99490 * 0.50688 * 20 19 18 22 22 C 1.38235 * 120.00335 * 359.74786 * 21 20 19 23 23 C 1.38230 * 120.00146 * 359.97438 * 22 21 20 24 24 H 0.96993 * 120.00336 * 0.02562 * 1 2 3 25 25 H 0.97001 * 120.00020 * 5.04579 * 9 7 2 26 26 H 1.08006 * 126.45655 * 0.04679 * 13 12 10 27 27 H 1.08002 * 126.06354 * 179.84231 * 14 13 12 28 28 H 1.08001 * 125.55506 * 180.24166 * 15 14 13 29 29 H 1.09007 * 109.46602 * 26.34626 * 17 16 15 30 30 H 1.09002 * 109.47076 * 146.34368 * 17 16 15 31 31 H 1.08004 * 119.99637 * 359.97438 * 19 18 17 32 32 H 1.07996 * 119.99983 * 180.22971 * 20 19 18 33 33 H 1.08003 * 119.99876 * 179.72552 * 21 20 19 34 34 H 1.08004 * 119.99739 * 179.97438 * 22 21 20 35 35 H 1.07997 * 120.00601 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.5048 2.0411 -1.4000 5 1 1.4407 2.6554 0.6907 6 1 3.5408 1.4430 0.7094 7 6 2.0091 -1.2038 0.0005 8 1 1.4701 -2.1386 -0.0443 9 7 3.3766 -1.2044 0.0579 10 6 4.0549 -2.3646 -0.0441 11 8 3.4509 -3.4206 -0.0926 12 6 5.5194 -2.3551 -0.0965 13 6 6.3338 -1.2507 0.0497 14 6 7.6537 -1.6944 -0.0742 15 6 7.6249 -3.0333 -0.2797 16 7 6.3338 -3.4471 -0.2953 17 6 5.8809 -4.8264 -0.4918 18 6 5.5871 -5.0556 -1.9520 19 6 4.2918 -4.9450 -2.4220 20 6 4.0230 -5.1505 -3.7623 21 6 5.0479 -5.4767 -4.6306 22 6 6.3423 -5.5924 -4.1596 23 6 6.6121 -5.3814 -2.8204 24 1 -0.4850 0.8400 -0.0004 25 1 3.8576 -0.3698 0.1720 26 1 6.0120 -0.2346 0.2245 27 1 8.5396 -1.0797 -0.0123 28 1 8.4894 -3.6674 -0.4101 29 1 6.6606 -5.5148 -0.1656 30 1 4.9767 -4.9986 0.0922 31 1 3.4903 -4.6948 -1.7426 32 1 3.0116 -5.0604 -4.1302 33 1 4.8372 -5.6416 -5.6770 34 1 7.1430 -5.8478 -4.8380 35 1 7.6233 -5.4722 -2.4523 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604544879.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:44 Heat of formation + Delta-G solvation = 42.100421 kcal Electronic energy + Delta-G solvation = -20027.236852 eV Core-core repulsion = 16991.097219 eV Total energy + Delta-G solvation = -3036.139633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.93646 -38.85481 -37.83264 -34.26152 -33.45039 -31.76121 -30.69372 -30.10704 -28.87726 -25.78470 -24.96170 -22.39997 -21.68310 -21.18252 -20.02763 -19.08769 -18.30109 -16.87125 -16.53117 -15.35238 -15.25099 -14.94674 -14.71250 -14.33643 -13.76031 -13.41538 -13.26942 -13.11293 -12.91121 -12.52370 -12.38070 -12.26662 -12.20465 -11.91734 -11.55486 -11.25318 -10.94785 -10.73690 -10.60011 -10.05919 -9.64076 -8.76670 -8.72343 -8.61049 -8.33667 -8.25504 -7.72420 -6.41793 -3.88212 1.39056 1.60880 2.13416 3.02241 3.07934 3.13132 3.18617 3.24136 4.02954 4.04898 4.23334 4.69845 4.86363 4.89807 5.11497 5.16375 5.23595 5.32137 5.38197 5.60515 5.68441 5.81894 5.84123 5.86285 5.92157 6.13244 6.31004 6.46773 6.56702 6.60555 6.76750 6.84488 7.17545 7.21966 7.46811 7.50261 7.67335 8.06377 8.52291 8.84972 9.33308 9.75537 10.70023 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018441 B = 0.006296 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.008951 B = 4446.494955 C = 5346.146271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.045 3.955 3 Si 0.878 3.122 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.301 4.301 8 H 0.123 0.877 9 N -0.564 5.564 10 C 0.510 3.490 11 O -0.588 6.588 12 C -0.001 4.001 13 C -0.179 4.179 14 C -0.204 4.204 15 C -0.012 4.012 16 N -0.407 5.407 17 C 0.142 3.858 18 C -0.109 4.109 19 C -0.082 4.082 20 C -0.126 4.126 21 C -0.116 4.116 22 C -0.134 4.134 23 C -0.106 4.106 24 H 0.276 0.724 25 H 0.376 0.624 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.158 0.842 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.153 0.847 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.368 -6.710 -4.532 16.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.159 4.159 3 Si 0.704 3.296 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.430 4.430 8 H 0.141 0.859 9 N -0.200 5.200 10 C 0.298 3.702 11 O -0.475 6.475 12 C -0.116 4.116 13 C -0.205 4.205 14 C -0.229 4.229 15 C -0.145 4.145 16 N -0.080 5.080 17 C 0.021 3.979 18 C -0.110 4.110 19 C -0.101 4.101 20 C -0.144 4.144 21 C -0.134 4.134 22 C -0.152 4.152 23 C -0.124 4.124 24 H 0.087 0.913 25 H 0.210 0.790 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.175 0.825 29 H 0.107 0.893 30 H 0.137 0.863 31 H 0.171 0.829 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.594 -7.631 -4.608 16.256 hybrid contribution 0.714 1.491 -0.056 1.654 sum 14.308 -6.141 -4.664 16.254 Atomic orbital electron populations 1.69607 1.05711 1.27893 1.47723 1.25073 0.95521 0.98173 0.97169 0.86683 0.79909 0.83756 0.79275 1.19290 1.19939 1.19228 1.19433 0.79074 0.96823 1.47631 0.85927 1.41925 1.07544 1.06956 1.63612 1.16398 0.83862 0.84835 0.85096 1.90517 1.69716 1.30141 1.57087 1.20590 0.92505 0.86670 1.11872 1.21264 0.92968 0.97285 1.09022 1.20647 0.97050 0.93943 1.11231 1.21753 0.86108 0.96112 1.10509 1.43909 1.05305 1.06636 1.52128 1.20885 1.02860 0.79989 0.94116 1.19955 0.94108 1.01832 0.95126 1.21821 0.97509 0.94486 0.96236 1.21270 0.99371 1.00010 0.93777 1.21176 0.93178 0.99643 0.99442 1.21002 0.96708 1.02130 0.95403 1.20976 0.98227 0.99596 0.93612 0.91334 0.79043 0.84778 0.84876 0.82464 0.89333 0.86295 0.82921 0.85956 0.86429 0.86447 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.81 13.96 55.50 0.77 -24.03 16 2 C 0.05 1.22 5.50 -17.45 -0.10 1.13 16 3 Si 0.88 19.39 27.84 -169.99 -4.73 14.66 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.43 6.39 56.52 0.36 -5.07 16 7 C -0.30 -8.35 10.16 -15.02 -0.15 -8.51 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 9 N -0.56 -13.78 5.05 -12.21 -0.06 -13.85 16 10 C 0.51 12.03 7.72 -12.91 -0.10 11.93 16 11 O -0.59 -14.82 11.56 5.15 0.06 -14.76 16 12 C 0.00 -0.03 6.89 -81.98 -0.56 -0.59 16 13 C -0.18 -3.21 10.36 -39.08 -0.40 -3.62 16 14 C -0.20 -3.10 10.81 -39.98 -0.43 -3.53 16 15 C -0.01 -0.17 11.38 -16.87 -0.19 -0.36 16 16 N -0.41 -6.92 2.75 -114.13 -0.31 -7.24 16 17 C 0.14 2.18 5.68 -5.19 -0.03 2.15 16 18 C -0.11 -1.72 5.46 -104.62 -0.57 -2.29 16 19 C -0.08 -1.44 9.35 -39.58 -0.37 -1.81 16 20 C -0.13 -1.94 10.05 -39.58 -0.40 -2.33 16 21 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 22 C -0.13 -1.69 10.05 -39.59 -0.40 -2.08 16 23 C -0.11 -1.41 9.73 -39.58 -0.39 -1.79 16 24 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.38 8.35 4.63 -40.82 -0.19 8.16 16 26 H 0.13 2.24 7.45 -52.48 -0.39 1.85 16 27 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 28 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 30 H 0.12 2.08 6.33 -51.93 -0.33 1.75 16 31 H 0.15 3.10 5.53 -52.48 -0.29 2.81 16 32 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 301.01 15.07 4.54 4.54 Total: -1.00 -30.79 301.01 -7.95 -38.74 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -3.72 Total: 15.57 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -4.49 Total: -13.63 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.40 Total: -45.12 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.06 Total: -14.76 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.73 Total: 14.66 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.79 -7.95 -38.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604544879.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.839 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds