Wall clock time and date at job start Mon Mar 30 2020 01:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31397 * 1 3 3 Si 1.86798 * 119.99648 * 2 1 4 4 H 1.48497 * 109.47411 * 269.55378 * 3 2 1 5 5 H 1.48500 * 109.47541 * 29.55923 * 3 2 1 6 6 H 1.48506 * 109.47284 * 149.55662 * 3 2 1 7 7 C 1.39006 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00044 * 2.77226 * 7 2 1 9 9 N 1.36872 * 120.00059 * 182.77549 * 7 2 1 10 10 C 1.34776 * 120.00258 * 185.05002 * 9 7 2 11 11 O 1.21745 * 120.00079 * 354.83620 * 10 9 7 12 12 C 1.46549 * 120.00523 * 174.83473 * 10 9 7 13 13 C 1.37999 * 126.23741 * 5.24723 * 12 10 9 14 14 C 1.39803 * 107.08471 * 180.18764 * 13 12 10 15 15 C 1.35488 * 107.87775 * 359.57429 * 14 13 12 16 16 N 1.35587 * 108.88113 * 0.26370 * 15 14 13 17 17 C 1.46502 * 125.68165 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47182 * 266.34613 * 17 16 15 19 19 C 1.38235 * 119.99936 * 263.43641 * 18 17 16 20 20 C 1.38237 * 120.00182 * 179.76689 * 19 18 17 21 21 C 1.38232 * 119.99490 * 0.50688 * 20 19 18 22 22 C 1.38235 * 120.00335 * 359.74786 * 21 20 19 23 23 C 1.38230 * 120.00146 * 359.97438 * 22 21 20 24 24 H 0.96993 * 120.00336 * 0.02562 * 1 2 3 25 25 H 0.97001 * 120.00020 * 5.04579 * 9 7 2 26 26 H 1.08006 * 126.45655 * 0.04679 * 13 12 10 27 27 H 1.08002 * 126.06354 * 179.84231 * 14 13 12 28 28 H 1.08001 * 125.55506 * 180.24166 * 15 14 13 29 29 H 1.09007 * 109.46602 * 26.34626 * 17 16 15 30 30 H 1.09002 * 109.47076 * 146.34368 * 17 16 15 31 31 H 1.08004 * 119.99637 * 359.97438 * 19 18 17 32 32 H 1.07996 * 119.99983 * 180.22971 * 20 19 18 33 33 H 1.08003 * 119.99876 * 179.72552 * 21 20 19 34 34 H 1.08004 * 119.99739 * 179.97438 * 22 21 20 35 35 H 1.07997 * 120.00601 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.5048 2.0411 -1.4000 5 1 1.4407 2.6554 0.6907 6 1 3.5408 1.4430 0.7094 7 6 2.0091 -1.2038 0.0005 8 1 1.4701 -2.1386 -0.0443 9 7 3.3766 -1.2044 0.0579 10 6 4.0549 -2.3646 -0.0441 11 8 3.4509 -3.4206 -0.0926 12 6 5.5194 -2.3551 -0.0965 13 6 6.3338 -1.2507 0.0497 14 6 7.6537 -1.6944 -0.0742 15 6 7.6249 -3.0333 -0.2797 16 7 6.3338 -3.4471 -0.2953 17 6 5.8809 -4.8264 -0.4918 18 6 5.5871 -5.0556 -1.9520 19 6 4.2918 -4.9450 -2.4220 20 6 4.0230 -5.1505 -3.7623 21 6 5.0479 -5.4767 -4.6306 22 6 6.3423 -5.5924 -4.1596 23 6 6.6121 -5.3814 -2.8204 24 1 -0.4850 0.8400 -0.0004 25 1 3.8576 -0.3698 0.1720 26 1 6.0120 -0.2346 0.2245 27 1 8.5396 -1.0797 -0.0123 28 1 8.4894 -3.6674 -0.4101 29 1 6.6606 -5.5148 -0.1656 30 1 4.9767 -4.9986 0.0922 31 1 3.4903 -4.6948 -1.7426 32 1 3.0116 -5.0604 -4.1302 33 1 4.8372 -5.6416 -5.6770 34 1 7.1430 -5.8478 -4.8380 35 1 7.6233 -5.4722 -2.4523 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604544879.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:44 Heat of formation + Delta-G solvation = 23.318606 kcal Electronic energy + Delta-G solvation = -20028.051293 eV Core-core repulsion = 16991.097219 eV Total energy + Delta-G solvation = -3036.954073 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.26296 -39.99486 -39.66543 -36.15281 -34.78296 -33.75616 -31.80053 -31.30047 -30.33732 -26.96914 -26.87473 -23.51810 -23.23887 -22.42995 -21.31351 -20.98740 -19.84304 -18.41231 -17.70628 -17.14233 -16.46180 -16.40972 -16.06160 -15.78556 -15.42451 -14.85035 -14.82077 -14.39620 -14.31559 -14.19479 -13.78649 -13.64140 -13.39930 -13.12805 -13.04468 -12.77709 -12.45273 -12.06059 -12.01867 -11.89546 -11.54936 -10.54752 -10.29449 -9.85903 -9.81873 -9.59285 -9.06107 -8.48096 -6.04913 0.27452 0.48104 0.67828 1.26394 1.34402 1.39284 1.93474 1.99674 2.17256 2.47708 2.83011 3.07299 3.19223 3.74536 3.78620 4.09925 4.13546 4.17195 4.28571 4.29103 4.50037 4.55636 4.59932 4.67094 4.75577 5.05397 5.16073 5.23569 5.34768 5.47564 5.50298 5.60791 5.68356 5.86061 5.98750 6.09049 6.11221 6.49052 6.54921 6.80377 7.31311 7.86117 8.68609 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018441 B = 0.006296 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.008951 B = 4446.494955 C = 5346.146271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.955 3.045 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.237 1.237 7 C -0.324 4.324 8 H 0.063 0.937 9 N -0.574 5.574 10 C 0.514 3.486 11 O -0.614 6.614 12 C -0.061 4.061 13 C -0.168 4.168 14 C -0.211 4.211 15 C 0.019 3.981 16 N -0.408 5.408 17 C 0.141 3.859 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.146 4.146 21 C -0.114 4.114 22 C -0.126 4.126 23 C -0.100 4.100 24 H 0.282 0.718 25 H 0.388 0.612 26 H 0.142 0.858 27 H 0.170 0.830 28 H 0.210 0.790 29 H 0.135 0.865 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.147 0.853 34 H 0.158 0.842 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.148 -6.151 -5.654 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.207 4.207 3 Si 0.775 3.225 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.160 1.160 7 C -0.453 4.453 8 H 0.082 0.918 9 N -0.213 5.213 10 C 0.304 3.696 11 O -0.502 6.502 12 C -0.174 4.174 13 C -0.195 4.195 14 C -0.234 4.234 15 C -0.115 4.115 16 N -0.081 5.081 17 C 0.020 3.980 18 C -0.121 4.121 19 C -0.139 4.139 20 C -0.164 4.164 21 C -0.132 4.132 22 C -0.144 4.144 23 C -0.118 4.118 24 H 0.091 0.909 25 H 0.224 0.776 26 H 0.159 0.841 27 H 0.187 0.813 28 H 0.227 0.773 29 H 0.153 0.847 30 H 0.099 0.901 31 H 0.123 0.877 32 H 0.135 0.865 33 H 0.165 0.835 34 H 0.176 0.824 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 19.373 -7.093 -5.722 21.410 hybrid contribution -0.950 1.081 0.250 1.461 sum 18.424 -6.012 -5.472 20.137 Atomic orbital electron populations 1.69761 1.07838 1.29426 1.49332 1.26011 0.96429 1.02335 0.95913 0.85501 0.79540 0.77413 0.80045 1.18318 1.19065 1.16047 1.18983 0.80859 0.95325 1.50118 0.91848 1.41694 1.06107 1.07865 1.65659 1.17195 0.86032 0.84033 0.82343 1.90531 1.71229 1.31259 1.57208 1.20099 0.90495 0.89232 1.17618 1.21605 0.94224 0.96963 1.06687 1.21082 0.96721 0.94697 1.10945 1.22675 0.85915 0.96728 1.06230 1.44111 1.05988 1.06371 1.51622 1.20943 1.02944 0.80282 0.93786 1.20019 0.93814 1.02498 0.95723 1.21600 0.97832 0.97761 0.96706 1.21368 1.00393 1.01173 0.93513 1.21518 0.93008 0.98331 1.00383 1.21514 0.97150 0.99956 0.95779 1.21357 0.98974 0.97941 0.93505 0.90857 0.77616 0.84056 0.81299 0.77337 0.84723 0.90125 0.87711 0.86466 0.83527 0.82425 0.82820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.96 13.96 21.67 0.30 -55.66 16 2 C -0.01 -0.39 5.50 84.94 0.47 0.08 16 3 Si 0.95 40.50 27.84 68.60 1.91 42.41 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.24 -8.77 6.39 99.48 0.64 -8.14 16 7 C -0.32 -19.51 10.16 84.09 0.85 -18.66 16 8 H 0.06 4.45 7.39 -2.91 -0.02 4.43 16 9 N -0.57 -29.57 5.05 -310.74 -1.57 -31.14 16 10 C 0.51 25.79 7.72 86.41 0.67 26.46 16 11 O -0.61 -34.26 11.56 -4.49 -0.05 -34.31 16 12 C -0.06 -2.43 6.89 40.34 0.28 -2.15 16 13 C -0.17 -5.58 10.36 22.59 0.23 -5.35 16 14 C -0.21 -5.32 10.81 22.01 0.24 -5.08 16 15 C 0.02 0.44 11.38 83.48 0.95 1.39 16 16 N -0.41 -13.01 2.75 -514.99 -1.41 -14.43 16 17 C 0.14 4.20 5.68 85.63 0.49 4.69 16 18 C -0.12 -3.68 5.46 -19.87 -0.11 -3.79 16 19 C -0.12 -4.53 9.35 22.27 0.21 -4.32 16 20 C -0.15 -4.71 10.05 22.27 0.22 -4.49 16 21 C -0.11 -2.78 10.05 22.27 0.22 -2.56 16 22 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 23 C -0.10 -2.25 9.73 22.27 0.22 -2.03 16 24 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 25 H 0.39 17.43 4.63 -92.71 -0.43 17.01 16 26 H 0.14 4.35 7.45 -2.91 -0.02 4.33 16 27 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.21 2.70 8.06 -2.91 -0.02 2.68 16 29 H 0.13 2.67 8.11 -2.38 -0.02 2.65 16 30 H 0.08 3.02 6.33 -2.39 -0.02 3.01 16 31 H 0.10 4.90 5.53 -2.91 -0.02 4.89 16 32 H 0.12 3.66 8.06 -2.91 -0.02 3.64 16 33 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 34 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -77.10 301.01 4.95 -72.15 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: 0.62 Total: 39.18 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 5.16 Total: -18.20 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -2.68 Total: -101.23 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.05 Total: -34.31 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 1.91 Total: 42.41 kcal Total: -77.10 4.95 -72.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604544879.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.468 kcal (2) G-P(sol) polarization free energy of solvation -77.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds