Wall clock time and date at job start Mon Mar 30 2020 01:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 120.00184 * 2 1 4 4 H 1.48495 * 109.47457 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46892 * 300.00635 * 3 2 1 6 6 H 1.48500 * 109.46604 * 60.00306 * 3 2 1 7 7 C 1.39929 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00234 * 162.63174 * 7 2 1 9 9 C 1.41428 * 120.00121 * 342.63945 * 7 2 1 10 10 C 1.40796 * 120.18095 * 154.91917 * 9 7 2 11 11 C 1.37710 * 120.04365 * 179.97438 * 10 9 7 12 12 C 1.38375 * 120.41091 * 0.02562 * 11 10 9 13 13 C 1.39898 * 120.35383 * 359.72681 * 12 11 10 14 14 C 1.47849 * 120.02763 * 180.27652 * 13 12 11 15 15 N 1.32103 * 126.67176 * 359.97087 * 14 13 12 16 16 C 1.34210 * 105.54547 * 179.85732 * 15 14 13 17 17 C 1.50705 * 126.18735 * 180.10875 * 16 15 14 18 18 C 1.53780 * 113.61521 * 219.46181 * 17 16 15 19 19 C 1.53958 * 87.01781 * 220.05175 * 18 17 16 20 20 C 1.53772 * 87.11298 * 25.36127 * 19 18 17 21 21 N 1.30032 * 107.62160 * 0.40413 * 16 15 14 22 22 O 1.21278 * 110.48378 * 359.74206 * 21 16 15 23 23 C 1.39030 * 119.94837 * 0.53447 * 13 12 11 24 24 H 0.97002 * 120.00312 * 359.97438 * 1 2 3 25 25 H 1.08000 * 119.97902 * 359.97438 * 10 9 7 26 26 H 1.08000 * 119.79481 * 180.02562 * 11 10 9 27 27 H 1.07998 * 119.82346 * 180.02562 * 12 11 10 28 28 H 1.09001 * 112.84868 * 350.66390 * 17 16 15 29 29 H 1.09000 * 113.61068 * 334.56662 * 18 17 16 30 30 H 1.08995 * 113.61008 * 105.46973 * 18 17 16 31 31 H 1.09003 * 113.53489 * 270.81006 * 19 18 17 32 32 H 1.08995 * 113.74079 * 139.94731 * 19 18 17 33 33 H 1.09007 * 113.61748 * 220.09080 * 20 19 18 34 34 H 1.09008 * 113.61600 * 89.19048 * 20 19 18 35 35 H 1.07998 * 120.20155 * 179.74828 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8836 2.3963 1.2126 7 6 2.0079 -1.2118 -0.0005 8 1 3.0510 -1.2330 -0.2798 9 6 1.3491 -2.4089 0.3644 10 6 1.8191 -3.6484 -0.1102 11 6 1.1757 -4.8123 0.2474 12 6 0.0657 -4.7740 1.0726 13 6 -0.4126 -3.5522 1.5581 14 6 -1.5955 -3.5202 2.4443 15 7 -2.2988 -4.5586 2.8593 16 6 -3.2657 -4.0499 3.6387 17 6 -4.3337 -4.8335 4.3574 18 6 -5.7130 -4.1537 4.3408 19 6 -5.8683 -4.6143 5.8016 20 6 -4.3327 -4.6226 5.8807 21 7 -3.1181 -2.7581 3.6565 22 8 -2.1671 -2.4303 2.9790 23 6 0.2222 -2.3676 1.2021 24 1 -0.4851 0.8400 0.0004 25 1 2.6846 -3.6864 -0.7550 26 1 1.5399 -5.7609 -0.1186 27 1 -0.4313 -5.6927 1.3474 28 1 -4.3602 -5.8824 4.0619 29 1 -5.6646 -3.0707 4.2273 30 1 -6.4216 -4.6208 3.6569 31 1 -6.3160 -5.6032 5.9009 32 1 -6.3349 -3.8716 6.4486 33 1 -3.9286 -5.4676 6.4383 34 1 -3.9062 -3.6680 6.1890 35 1 -0.1459 -1.4218 1.5712 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612897021.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:24 Heat of formation + Delta-G solvation = 96.127981 kcal Electronic energy + Delta-G solvation = -19458.193591 eV Core-core repulsion = 16424.396769 eV Total energy + Delta-G solvation = -3033.796822 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.86686 -38.86787 -37.73450 -35.01690 -33.86164 -32.30693 -29.83365 -29.25418 -26.72004 -25.75603 -25.42999 -23.68951 -22.51462 -20.84891 -20.58701 -19.05672 -17.73478 -17.41560 -16.94313 -15.66413 -15.36548 -15.14601 -14.81941 -14.35692 -13.55864 -12.94827 -12.88893 -12.79412 -12.59192 -12.56131 -11.97780 -11.85211 -11.49858 -11.20173 -11.10327 -11.00745 -10.89571 -10.71524 -10.58243 -10.42387 -10.37797 -9.90133 -9.79766 -9.64654 -9.24834 -7.63391 -7.59413 -6.89818 -4.51762 1.35669 2.40337 2.69672 3.03234 3.04619 3.08669 3.26424 3.46538 3.85279 4.00581 4.33811 4.48015 4.54064 4.71488 4.80560 4.83387 5.45049 5.48498 5.52534 5.66817 5.74130 5.77909 5.81995 5.98558 6.07728 6.23883 6.32586 6.35117 6.50985 6.64395 6.84672 6.93921 7.10140 7.23493 7.59022 7.72122 7.81226 8.00657 8.37021 8.67611 8.71308 8.76282 10.05438 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.024785 B = 0.004575 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.427622 B = 6119.146840 C = 7044.161823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.458 4.458 8 H 0.083 0.917 9 C 0.102 3.898 10 C -0.199 4.199 11 C -0.098 4.098 12 C -0.186 4.186 13 C -0.034 4.034 14 C 0.265 3.735 15 N -0.500 5.500 16 C 0.174 3.826 17 C -0.022 4.022 18 C -0.129 4.129 19 C -0.138 4.138 20 C -0.127 4.127 21 N -0.401 5.401 22 O 0.075 5.925 23 C -0.112 4.112 24 H 0.284 0.716 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.455 -4.764 6.695 10.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.487 4.487 8 H 0.102 0.898 9 C 0.099 3.901 10 C -0.220 4.220 11 C -0.116 4.116 12 C -0.207 4.207 13 C -0.036 4.036 14 C 0.051 3.949 15 N -0.234 5.234 16 C -0.099 4.099 17 C -0.042 4.042 18 C -0.167 4.167 19 C -0.176 4.176 20 C -0.165 4.165 21 N -0.112 5.112 22 O 0.019 5.981 23 C -0.134 4.134 24 H 0.095 0.905 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.134 0.866 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.319 -4.493 7.167 11.186 hybrid contribution 0.441 0.824 -0.246 0.967 sum -6.878 -3.668 6.921 10.424 Atomic orbital electron populations 1.69772 1.07632 1.29736 1.34342 1.25944 0.94769 1.01583 0.92096 0.86226 0.80945 0.80699 0.78736 1.18272 1.19879 1.19538 1.19612 0.98161 0.90824 1.40152 0.89841 1.17486 0.90893 0.92601 0.89116 1.21217 1.03184 0.92699 1.04859 1.20482 0.95734 0.97106 0.98274 1.20341 1.00298 0.94881 1.05215 1.17219 0.91265 0.96123 0.99031 1.26973 0.95091 0.79545 0.93309 1.72115 1.07230 1.28718 1.15292 1.25445 0.97840 0.88406 0.98191 1.20935 0.90127 0.98660 0.94446 1.23018 0.94991 1.01549 0.97158 1.22820 0.96119 1.01822 0.96803 1.22966 0.96735 1.02879 0.93968 1.74440 1.05586 1.16105 1.15093 1.85402 1.31130 1.35404 1.46173 1.21596 0.97849 0.95522 0.98424 0.90452 0.88155 0.88190 0.87661 0.86583 0.89237 0.90844 0.89817 0.90945 0.90764 0.89616 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.63 10.97 55.55 0.61 -19.02 16 2 C 0.07 1.78 5.14 -17.35 -0.09 1.69 16 3 Si 0.91 17.85 29.59 -169.99 -5.03 12.82 16 4 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -11.39 9.05 -37.74 -0.34 -11.73 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 9 C 0.10 2.54 5.57 -106.87 -0.59 1.94 16 10 C -0.20 -4.51 9.78 -38.81 -0.38 -4.89 16 11 C -0.10 -2.04 10.01 -39.72 -0.40 -2.44 16 12 C -0.19 -4.07 9.71 -38.91 -0.38 -4.45 16 13 C -0.03 -0.78 5.87 -105.05 -0.62 -1.40 16 14 C 0.27 5.89 8.01 -13.85 -0.11 5.78 16 15 N -0.50 -10.40 11.24 -10.17 -0.11 -10.52 16 16 C 0.17 3.23 7.25 -156.55 -1.13 2.10 16 17 C -0.02 -0.30 4.28 -90.96 -0.39 -0.69 16 18 C -0.13 -1.50 7.63 -25.83 -0.20 -1.70 16 19 C -0.14 -1.30 8.09 -25.83 -0.21 -1.51 16 20 C -0.13 -1.46 7.63 -25.92 -0.20 -1.66 16 21 N -0.40 -8.04 11.79 31.18 0.37 -7.68 16 22 O 0.07 1.65 11.12 16.69 0.19 1.83 16 23 C -0.11 -2.79 8.37 -38.45 -0.32 -3.11 16 24 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 25 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 26 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.11 2.16 7.86 -52.49 -0.41 1.75 16 28 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.09 1.18 7.80 -51.93 -0.41 0.77 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.10 8.09 -51.92 -0.42 0.68 16 35 H 0.13 3.39 6.06 -52.49 -0.32 3.07 16 LS Contribution 305.26 15.07 4.60 4.60 Total: -1.00 -26.52 305.26 -8.80 -35.32 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.06 Total: 4.71 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -5.36 Total: -22.07 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.86 Total: -37.21 kcal Atomic # 8 Polarization: 1.65 SS G_CDS: 0.19 Total: 1.83 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.52 -8.80 -35.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612897021.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.452 kcal (2) G-P(sol) polarization free energy of solvation -26.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds