Wall clock time and date at job start Mon Mar 30 2020 01:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 120.00184 * 2 1 4 4 H 1.48495 * 109.47457 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46892 * 300.00635 * 3 2 1 6 6 H 1.48500 * 109.46604 * 60.00306 * 3 2 1 7 7 C 1.39929 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00234 * 162.63174 * 7 2 1 9 9 C 1.41428 * 120.00121 * 342.63945 * 7 2 1 10 10 C 1.40796 * 120.18095 * 154.91917 * 9 7 2 11 11 C 1.37710 * 120.04365 * 179.97438 * 10 9 7 12 12 C 1.38375 * 120.41091 * 0.02562 * 11 10 9 13 13 C 1.39898 * 120.35383 * 359.72681 * 12 11 10 14 14 C 1.47849 * 120.02763 * 180.27652 * 13 12 11 15 15 N 1.32103 * 126.67176 * 359.97087 * 14 13 12 16 16 C 1.34210 * 105.54547 * 179.85732 * 15 14 13 17 17 C 1.50705 * 126.18735 * 180.10875 * 16 15 14 18 18 C 1.53780 * 113.61521 * 219.46181 * 17 16 15 19 19 C 1.53958 * 87.01781 * 220.05175 * 18 17 16 20 20 C 1.53772 * 87.11298 * 25.36127 * 19 18 17 21 21 N 1.30032 * 107.62160 * 0.40413 * 16 15 14 22 22 O 1.21278 * 110.48378 * 359.74206 * 21 16 15 23 23 C 1.39030 * 119.94837 * 0.53447 * 13 12 11 24 24 H 0.97002 * 120.00312 * 359.97438 * 1 2 3 25 25 H 1.08000 * 119.97902 * 359.97438 * 10 9 7 26 26 H 1.08000 * 119.79481 * 180.02562 * 11 10 9 27 27 H 1.07998 * 119.82346 * 180.02562 * 12 11 10 28 28 H 1.09001 * 112.84868 * 350.66390 * 17 16 15 29 29 H 1.09000 * 113.61068 * 334.56662 * 18 17 16 30 30 H 1.08995 * 113.61008 * 105.46973 * 18 17 16 31 31 H 1.09003 * 113.53489 * 270.81006 * 19 18 17 32 32 H 1.08995 * 113.74079 * 139.94731 * 19 18 17 33 33 H 1.09007 * 113.61748 * 220.09080 * 20 19 18 34 34 H 1.09008 * 113.61600 * 89.19048 * 20 19 18 35 35 H 1.07998 * 120.20155 * 179.74828 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8836 2.3963 1.2126 7 6 2.0079 -1.2118 -0.0005 8 1 3.0510 -1.2330 -0.2798 9 6 1.3491 -2.4089 0.3644 10 6 1.8191 -3.6484 -0.1102 11 6 1.1757 -4.8123 0.2474 12 6 0.0657 -4.7740 1.0726 13 6 -0.4126 -3.5522 1.5581 14 6 -1.5955 -3.5202 2.4443 15 7 -2.2988 -4.5586 2.8593 16 6 -3.2657 -4.0499 3.6387 17 6 -4.3337 -4.8335 4.3574 18 6 -5.7130 -4.1537 4.3408 19 6 -5.8683 -4.6143 5.8016 20 6 -4.3327 -4.6226 5.8807 21 7 -3.1181 -2.7581 3.6565 22 8 -2.1671 -2.4303 2.9790 23 6 0.2222 -2.3676 1.2021 24 1 -0.4851 0.8400 0.0004 25 1 2.6846 -3.6864 -0.7550 26 1 1.5399 -5.7609 -0.1186 27 1 -0.4313 -5.6927 1.3474 28 1 -4.3602 -5.8824 4.0619 29 1 -5.6646 -3.0707 4.2273 30 1 -6.4216 -4.6208 3.6569 31 1 -6.3160 -5.6032 5.9009 32 1 -6.3349 -3.8716 6.4486 33 1 -3.9286 -5.4676 6.4383 34 1 -3.9062 -3.6680 6.1890 35 1 -0.1459 -1.4218 1.5712 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612897021.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:24 Heat of formation + Delta-G solvation = 82.600721 kcal Electronic energy + Delta-G solvation = -19458.780177 eV Core-core repulsion = 16424.396769 eV Total energy + Delta-G solvation = -3034.383408 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.47219 -39.86261 -39.51105 -36.61290 -35.63250 -33.95044 -31.63480 -30.96603 -27.91504 -27.21182 -26.66703 -25.36334 -24.02406 -22.58924 -22.05719 -20.21601 -19.42314 -19.04376 -18.54556 -17.21399 -16.64954 -16.51604 -16.41598 -15.88208 -15.29283 -14.59665 -14.33156 -13.99889 -13.91391 -13.75286 -13.50511 -13.36267 -13.18535 -12.84110 -12.71677 -12.43623 -12.24489 -12.11718 -11.95225 -11.69036 -11.59749 -11.53715 -11.42528 -11.16501 -10.95320 -9.45949 -9.36583 -8.68138 -6.39895 -0.37913 0.82000 0.95374 1.40407 1.42255 1.56023 1.58524 1.77779 2.20667 2.60399 2.70051 3.02477 3.60018 3.61090 3.63700 3.77877 3.85981 4.15229 4.42727 4.58132 4.62961 4.67749 4.72418 4.76917 4.87603 4.90361 4.94021 5.04118 5.05281 5.10498 5.15559 5.29410 5.43570 5.46200 5.79726 5.92567 5.99423 6.21225 6.53013 6.86483 6.86992 7.10679 8.29243 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.024785 B = 0.004575 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.427622 B = 6119.146840 C = 7044.161823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.035 3.965 3 Si 0.980 3.020 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.490 4.490 8 H 0.088 0.912 9 C 0.075 3.925 10 C -0.204 4.204 11 C -0.091 4.091 12 C -0.183 4.183 13 C -0.041 4.041 14 C 0.252 3.748 15 N -0.503 5.503 16 C 0.184 3.816 17 C -0.036 4.036 18 C -0.130 4.130 19 C -0.117 4.117 20 C -0.126 4.126 21 N -0.412 5.412 22 O 0.050 5.950 23 C -0.138 4.138 24 H 0.289 0.711 25 H 0.117 0.883 26 H 0.141 0.859 27 H 0.121 0.879 28 H 0.134 0.866 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.984 -6.271 7.286 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.175 1.175 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.519 4.519 8 H 0.106 0.894 9 C 0.072 3.928 10 C -0.224 4.224 11 C -0.108 4.108 12 C -0.204 4.204 13 C -0.044 4.044 14 C 0.037 3.963 15 N -0.238 5.238 16 C -0.089 4.089 17 C -0.056 4.056 18 C -0.168 4.168 19 C -0.155 4.155 20 C -0.165 4.165 21 N -0.126 5.126 22 O -0.001 6.001 23 C -0.160 4.160 24 H 0.100 0.900 25 H 0.135 0.865 26 H 0.159 0.841 27 H 0.139 0.861 28 H 0.152 0.848 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.829 -5.997 7.745 12.540 hybrid contribution 0.530 1.134 -0.398 1.313 sum -7.300 -4.863 7.348 11.442 Atomic orbital electron populations 1.69846 1.09141 1.30774 1.35349 1.26773 0.95381 1.04714 0.91138 0.85170 0.79731 0.76227 0.78741 1.17549 1.19158 1.19419 1.19889 0.98564 0.91791 1.41645 0.89433 1.17841 0.91371 0.93927 0.89619 1.21507 1.03672 0.92482 1.04730 1.20885 0.94692 0.98272 0.96993 1.20645 1.00395 0.94754 1.04610 1.17407 0.91539 0.96307 0.99151 1.26959 0.95387 0.80141 0.93831 1.72129 1.07626 1.28376 1.15629 1.26400 0.97614 0.88176 0.96719 1.21476 0.89541 0.99068 0.95474 1.23030 0.93945 1.00289 0.99577 1.22794 0.94362 1.03490 0.94808 1.22977 0.98748 1.02614 0.92156 1.74448 1.05456 1.17140 1.15587 1.85395 1.31912 1.35896 1.46868 1.21441 0.99127 0.95383 1.00056 0.90040 0.86452 0.84084 0.86061 0.84833 0.91311 0.89245 0.87115 0.89864 0.89011 0.91518 0.87194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.70 10.97 21.82 0.24 -42.46 16 2 C 0.04 1.72 5.14 85.25 0.44 2.16 16 3 Si 0.98 37.15 29.59 68.60 2.03 39.18 16 4 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 6 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.49 -24.97 9.05 23.47 0.21 -24.76 16 8 H 0.09 4.22 7.90 -2.91 -0.02 4.19 16 9 C 0.07 3.83 5.57 -21.32 -0.12 3.71 16 10 C -0.20 -9.10 9.78 22.77 0.22 -8.88 16 11 C -0.09 -3.62 10.01 22.18 0.22 -3.40 16 12 C -0.18 -7.83 9.71 22.70 0.22 -7.61 16 13 C -0.04 -1.97 5.87 -20.14 -0.12 -2.09 16 14 C 0.25 11.47 8.01 87.32 0.70 12.17 16 15 N -0.50 -20.84 11.24 -302.80 -3.40 -24.25 16 16 C 0.18 6.77 7.25 138.53 1.00 7.78 16 17 C -0.04 -0.91 4.28 -11.01 -0.05 -0.96 16 18 C -0.13 -2.77 7.63 31.18 0.24 -2.53 16 19 C -0.12 -1.81 8.09 31.18 0.25 -1.56 16 20 C -0.13 -2.64 7.63 31.12 0.24 -2.40 16 21 N -0.41 -16.90 11.79 -58.69 -0.69 -17.59 16 22 O 0.05 2.30 11.12 69.78 0.78 3.08 16 23 C -0.14 -7.18 8.37 23.01 0.19 -6.99 16 24 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 25 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 26 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 27 H 0.12 4.76 7.86 -2.91 -0.02 4.73 16 28 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 29 H 0.07 1.77 7.80 -2.39 -0.02 1.75 16 30 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.07 1.65 8.09 -2.38 -0.02 1.64 16 35 H 0.11 6.08 6.06 -2.91 -0.02 6.06 16 Total: -1.00 -59.12 305.26 3.71 -55.41 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 1.11 Total: 21.98 kcal Atomic # 6 Polarization: -39.01 SS G_CDS: 3.65 Total: -35.36 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -3.86 Total: -84.29 kcal Atomic # 8 Polarization: 2.30 SS G_CDS: 0.78 Total: 3.08 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Total: -59.12 3.71 -55.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612897021.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.013 kcal (2) G-P(sol) polarization free energy of solvation -59.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds