Wall clock time and date at job start Mon Mar 30 2020 01:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46762 * 124.35377 * 2 1 4 4 C 1.54477 * 105.47794 * 162.96169 * 3 2 1 5 5 H 1.09000 * 110.97169 * 267.25841 * 4 3 2 6 6 C 1.50705 * 110.96947 * 143.53193 * 4 3 2 7 7 O 1.20817 * 120.00125 * 0.02562 * 6 4 3 8 8 O 1.34229 * 119.99673 * 179.97438 * 6 4 3 9 9 C 1.45206 * 116.99690 * 179.97438 * 8 6 4 10 10 C 1.50703 * 109.46768 * 180.02562 * 9 8 6 11 11 O 1.21290 * 120.00285 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99541 * 180.02562 * 10 9 8 13 13 C 1.37101 * 119.99649 * 179.97438 * 12 10 9 14 14 H 1.08003 * 120.00266 * 359.97438 * 13 12 10 15 15 C 1.38949 * 120.00025 * 179.97438 * 13 12 10 16 16 N 1.31406 * 120.00069 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99709 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99702 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99882 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99875 * 17 15 13 21 21 C 1.54631 * 101.76489 * 25.41407 * 4 3 2 22 22 C 1.34422 * 124.35088 * 179.97438 * 2 1 3 23 23 O 1.21284 * 124.93658 * 0.43251 * 22 2 1 24 24 H 1.08991 * 109.47195 * 90.00143 * 1 2 3 25 25 H 1.09001 * 109.47216 * 210.00896 * 1 2 3 26 26 H 1.09002 * 109.46829 * 330.00220 * 1 2 3 27 27 H 1.09002 * 110.24719 * 43.95891 * 3 2 1 28 28 H 1.09003 * 110.24331 * 281.96517 * 3 2 1 29 29 H 1.08996 * 109.46914 * 60.00658 * 9 8 6 30 30 H 1.08999 * 109.46990 * 300.00400 * 9 8 6 31 31 H 0.96993 * 120.00289 * 359.97438 * 12 10 9 32 32 H 0.97008 * 120.00016 * 179.97438 * 16 15 13 33 33 H 1.08994 * 110.48756 * 93.88091 * 21 4 3 34 34 H 1.08996 * 110.48401 * 216.52501 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2116 0.0000 4 6 3.7009 0.7487 0.4362 5 1 3.8267 0.8457 1.5146 6 6 4.7718 1.5122 -0.2997 7 8 4.4649 2.3574 -1.1066 8 8 6.0666 1.2537 -0.0579 9 6 7.0435 2.0270 -0.8036 10 6 8.4327 1.6015 -0.4030 11 8 8.5844 0.7325 0.4294 12 7 9.5064 2.1875 -0.9690 13 6 10.7701 1.8008 -0.6042 14 1 10.9053 1.0270 0.1370 15 6 11.8771 2.4044 -1.1881 16 7 13.0883 2.0342 -0.8381 17 14 11.6433 3.7433 -2.4696 18 1 11.5764 3.1296 -3.8202 19 1 12.7869 4.6890 -2.4118 20 1 10.3810 4.4759 -2.1956 21 6 3.6898 -0.7379 0.0110 22 6 2.2235 -1.1098 0.0005 23 8 1.7946 -2.2442 -0.0065 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5140 26 1 -0.3633 0.8900 0.5138 27 1 1.8983 1.9385 0.7099 28 1 2.3310 1.6426 -1.0005 29 1 6.9108 3.0868 -0.5860 30 1 6.9048 1.8551 -1.8710 31 1 9.3850 2.8827 -1.6344 32 1 13.8612 2.4554 -1.2460 33 1 4.1197 -0.8534 -0.9839 34 1 4.2324 -1.3458 0.7350 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731240142.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:34 Heat of formation + Delta-G solvation = -141.868660 kcal Electronic energy + Delta-G solvation = -20081.898165 eV Core-core repulsion = 16594.639020 eV Total energy + Delta-G solvation = -3487.259145 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.25580 -40.03562 -38.40932 -36.84121 -36.18854 -34.11034 -33.39264 -31.84076 -29.00138 -28.07613 -27.22380 -24.75011 -23.55172 -20.71537 -19.86920 -19.68705 -18.64772 -18.16687 -17.19600 -16.89359 -16.38188 -16.03588 -15.66436 -15.31116 -14.85361 -14.48977 -14.08081 -13.85724 -13.76148 -13.50316 -12.99389 -12.76877 -12.66909 -12.51554 -12.35696 -12.26120 -11.91271 -11.66758 -11.30117 -10.75571 -10.68939 -10.65371 -10.12380 -10.08099 -9.71504 -9.10663 -8.72176 -8.33210 -6.42518 -3.95742 1.96652 2.26369 2.26869 2.72601 2.95425 3.00380 3.09522 3.50300 3.80130 3.95742 4.00688 4.24822 4.44531 4.59472 4.84157 4.89487 4.97374 5.06916 5.10012 5.22989 5.27757 5.35119 5.46219 5.48401 5.49548 5.61694 6.07242 6.33485 6.68173 7.39671 7.58523 7.81555 7.96939 8.43641 8.80133 9.26013 9.60926 10.69666 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.044818 B = 0.003362 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.605333 B = 8326.546504 C = 8720.224138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.626 5.626 3 C 0.115 3.885 4 C -0.096 4.096 5 H 0.133 0.867 6 C 0.473 3.527 7 O -0.508 6.508 8 O -0.317 6.317 9 C 0.057 3.943 10 C 0.446 3.554 11 O -0.556 6.556 12 N -0.578 5.578 13 C -0.309 4.309 14 H 0.123 0.877 15 C 0.046 3.954 16 N -0.874 5.874 17 Si 0.879 3.121 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.268 1.268 21 C -0.142 4.142 22 C 0.521 3.479 23 O -0.526 6.526 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.373 0.627 32 H 0.276 0.724 33 H 0.113 0.887 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.871 2.600 -0.435 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.361 5.361 3 C -0.008 4.008 4 C -0.115 4.115 5 H 0.151 0.849 6 C 0.315 3.685 7 O -0.396 6.396 8 O -0.231 6.231 9 C -0.020 4.020 10 C 0.231 3.769 11 O -0.438 6.438 12 N -0.218 5.218 13 C -0.437 4.437 14 H 0.140 0.860 15 C -0.159 4.159 16 N -0.513 5.513 17 Si 0.705 3.295 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.194 1.194 21 C -0.182 4.182 22 C 0.308 3.692 23 O -0.402 6.402 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.206 0.794 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.893 1.681 -0.137 21.958 hybrid contribution 0.088 1.426 -1.165 1.843 sum -21.805 3.107 -1.302 22.064 Atomic orbital electron populations 1.21565 0.77497 1.03283 1.02139 1.48190 1.06776 1.07125 1.73997 1.22054 0.87530 0.87100 1.04129 1.21850 0.91572 0.95301 1.02824 0.84915 1.23035 0.83664 0.81254 0.80580 1.90670 1.83167 1.32291 1.33504 1.86558 1.14924 1.59930 1.61719 1.22815 0.87309 0.95657 0.96240 1.19162 0.84326 0.86778 0.86652 1.90614 1.85557 1.32977 1.34653 1.42034 1.06058 1.35536 1.38207 1.19427 0.79112 1.21416 1.23779 0.85973 1.25042 0.94869 0.98008 0.97946 1.69613 0.97627 1.41869 1.42176 0.86677 0.78629 0.81983 0.82182 1.19389 1.19938 1.19359 1.22340 0.95279 0.94356 1.06271 1.20782 0.88885 0.84386 0.75104 1.90746 1.78415 1.20967 1.50085 0.92394 0.90487 0.90797 0.89112 0.88791 0.89217 0.89257 0.79383 0.91341 0.86928 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.64 10.96 59.85 0.66 1.29 16 2 N -0.63 -5.57 3.33 -180.29 -0.60 -6.17 16 3 C 0.11 0.88 6.71 -3.12 -0.02 0.86 16 4 C -0.10 -0.86 3.66 -90.14 -0.33 -1.19 16 5 H 0.13 0.94 8.14 -51.93 -0.42 0.51 16 6 C 0.47 5.93 7.19 36.01 0.26 6.19 16 7 O -0.51 -7.07 15.25 -18.74 -0.29 -7.36 16 8 O -0.32 -5.02 9.76 -45.90 -0.45 -5.47 16 9 C 0.06 0.94 5.94 36.01 0.21 1.16 16 10 C 0.45 9.85 7.86 -10.98 -0.09 9.77 16 11 O -0.56 -14.73 16.08 -14.11 -0.23 -14.95 16 12 N -0.58 -13.25 5.09 -10.96 -0.06 -13.31 16 13 C -0.31 -8.46 10.16 -14.93 -0.15 -8.61 16 14 H 0.12 3.82 7.39 -52.48 -0.39 3.44 16 15 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 16 N -0.87 -24.75 13.96 55.50 0.77 -23.97 16 17 Si 0.88 18.59 27.74 -169.99 -4.71 13.88 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.27 -5.13 6.52 56.52 0.37 -4.76 16 21 C -0.14 -1.40 6.41 -26.74 -0.17 -1.57 16 22 C 0.52 5.98 8.02 -10.86 -0.09 5.89 16 23 O -0.53 -8.02 17.59 5.55 0.10 -7.92 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.08 0.56 7.93 -51.93 -0.41 0.15 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.80 6.96 -51.93 -0.36 0.43 16 29 H 0.09 1.28 8.13 -51.93 -0.42 0.86 16 30 H 0.09 1.28 8.13 -51.93 -0.42 0.86 16 31 H 0.37 7.39 5.76 -40.82 -0.24 7.15 16 32 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.11 1.11 7.89 -51.93 -0.41 0.71 16 34 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 303.16 15.07 4.57 4.57 Total: -1.00 -34.99 303.16 -4.64 -39.63 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -3.93 Total: 6.19 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 0.19 Total: 14.89 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.12 Total: -43.45 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -0.86 Total: -35.70 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -4.71 Total: 13.88 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.99 -4.64 -39.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240142.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.240 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds