Wall clock time and date at job start Mon Mar 30 2020 01:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46762 * 124.35377 * 2 1 4 4 C 1.54477 * 105.47794 * 162.96169 * 3 2 1 5 5 H 1.09000 * 110.97169 * 267.25841 * 4 3 2 6 6 C 1.50705 * 110.96947 * 143.53193 * 4 3 2 7 7 O 1.20817 * 120.00125 * 0.02562 * 6 4 3 8 8 O 1.34229 * 119.99673 * 179.97438 * 6 4 3 9 9 C 1.45206 * 116.99690 * 179.97438 * 8 6 4 10 10 C 1.50703 * 109.46768 * 180.02562 * 9 8 6 11 11 O 1.21290 * 120.00285 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99541 * 180.02562 * 10 9 8 13 13 C 1.37101 * 119.99649 * 179.97438 * 12 10 9 14 14 H 1.08003 * 120.00266 * 359.97438 * 13 12 10 15 15 C 1.38949 * 120.00025 * 179.97438 * 13 12 10 16 16 N 1.31406 * 120.00069 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99709 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99702 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99882 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99875 * 17 15 13 21 21 C 1.54631 * 101.76489 * 25.41407 * 4 3 2 22 22 C 1.34422 * 124.35088 * 179.97438 * 2 1 3 23 23 O 1.21284 * 124.93658 * 0.43251 * 22 2 1 24 24 H 1.08991 * 109.47195 * 90.00143 * 1 2 3 25 25 H 1.09001 * 109.47216 * 210.00896 * 1 2 3 26 26 H 1.09002 * 109.46829 * 330.00220 * 1 2 3 27 27 H 1.09002 * 110.24719 * 43.95891 * 3 2 1 28 28 H 1.09003 * 110.24331 * 281.96517 * 3 2 1 29 29 H 1.08996 * 109.46914 * 60.00658 * 9 8 6 30 30 H 1.08999 * 109.46990 * 300.00400 * 9 8 6 31 31 H 0.96993 * 120.00289 * 359.97438 * 12 10 9 32 32 H 0.97008 * 120.00016 * 179.97438 * 16 15 13 33 33 H 1.08994 * 110.48756 * 93.88091 * 21 4 3 34 34 H 1.08996 * 110.48401 * 216.52501 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2116 0.0000 4 6 3.7009 0.7487 0.4362 5 1 3.8267 0.8457 1.5146 6 6 4.7718 1.5122 -0.2997 7 8 4.4649 2.3574 -1.1066 8 8 6.0666 1.2537 -0.0579 9 6 7.0435 2.0270 -0.8036 10 6 8.4327 1.6015 -0.4030 11 8 8.5844 0.7325 0.4294 12 7 9.5064 2.1875 -0.9690 13 6 10.7701 1.8008 -0.6042 14 1 10.9053 1.0270 0.1370 15 6 11.8771 2.4044 -1.1881 16 7 13.0883 2.0342 -0.8381 17 14 11.6433 3.7433 -2.4696 18 1 11.5764 3.1296 -3.8202 19 1 12.7869 4.6890 -2.4118 20 1 10.3810 4.4759 -2.1956 21 6 3.6898 -0.7379 0.0110 22 6 2.2235 -1.1098 0.0005 23 8 1.7946 -2.2442 -0.0065 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5140 26 1 -0.3633 0.8900 0.5138 27 1 1.8983 1.9385 0.7099 28 1 2.3310 1.6426 -1.0005 29 1 6.9108 3.0868 -0.5860 30 1 6.9048 1.8551 -1.8710 31 1 9.3850 2.8827 -1.6344 32 1 13.8612 2.4554 -1.2460 33 1 4.1197 -0.8534 -0.9839 34 1 4.2324 -1.3458 0.7350 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731240142.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:34 Heat of formation + Delta-G solvation = -168.072568 kcal Electronic energy + Delta-G solvation = -20083.034452 eV Core-core repulsion = 16594.639020 eV Total energy + Delta-G solvation = -3488.395432 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.18362 -41.06639 -40.12040 -37.89998 -37.23110 -36.06972 -34.12018 -33.84586 -30.37431 -28.90012 -27.95257 -26.46515 -24.53853 -21.67602 -21.51536 -20.66889 -20.49244 -19.12777 -18.10352 -18.00893 -17.54512 -17.43476 -16.91152 -16.54503 -16.14219 -15.83624 -15.30884 -14.82333 -14.73761 -14.68662 -14.49938 -14.18918 -13.81116 -13.68744 -13.40929 -13.19775 -12.99263 -12.59893 -12.48841 -12.44659 -11.99436 -11.86240 -11.73146 -11.57152 -11.04637 -10.58766 -10.32933 -9.82060 -8.44929 -6.08185 0.98955 1.23397 1.31703 1.35104 1.39647 1.45921 1.78229 1.99008 2.21486 2.75640 3.09062 3.10235 3.25242 3.60906 3.71336 3.89886 4.04814 4.15803 4.18049 4.36902 4.39193 4.54732 4.63273 4.75155 4.83331 4.88125 5.25822 5.42810 5.48926 5.86913 5.92755 6.45474 6.58034 6.79132 6.98780 7.27419 7.79870 8.71753 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.044818 B = 0.003362 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.605333 B = 8326.546504 C = 8720.224138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.619 5.619 3 C 0.119 3.881 4 C -0.087 4.087 5 H 0.157 0.843 6 C 0.479 3.521 7 O -0.517 6.517 8 O -0.340 6.340 9 C 0.068 3.932 10 C 0.447 3.553 11 O -0.608 6.608 12 N -0.577 5.577 13 C -0.333 4.333 14 H 0.060 0.940 15 C -0.009 4.009 16 N -0.927 5.927 17 Si 0.962 3.038 18 H -0.256 1.256 19 H -0.274 1.274 20 H -0.228 1.228 21 C -0.142 4.142 22 C 0.515 3.485 23 O -0.574 6.574 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.393 0.607 32 H 0.282 0.718 33 H 0.109 0.891 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.227 5.457 -1.798 24.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.353 5.353 3 C -0.003 4.003 4 C -0.107 4.107 5 H 0.175 0.825 6 C 0.322 3.678 7 O -0.406 6.406 8 O -0.255 6.255 9 C -0.009 4.009 10 C 0.234 3.766 11 O -0.493 6.493 12 N -0.219 5.219 13 C -0.462 4.462 14 H 0.078 0.922 15 C -0.209 4.209 16 N -0.567 5.567 17 Si 0.782 3.218 18 H -0.180 1.180 19 H -0.199 1.199 20 H -0.151 1.151 21 C -0.182 4.182 22 C 0.303 3.697 23 O -0.454 6.454 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.124 0.876 27 H 0.142 0.858 28 H 0.109 0.891 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.230 0.770 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -24.295 4.585 -1.507 24.769 hybrid contribution 0.772 0.463 -0.663 1.118 sum -23.523 5.048 -2.170 24.156 Atomic orbital electron populations 1.21780 0.76053 1.04364 1.02877 1.48334 1.07808 1.06804 1.72329 1.22181 0.86425 0.86825 1.04895 1.21949 0.91082 0.93858 1.03767 0.82519 1.23522 0.82788 0.81160 0.80363 1.90668 1.82985 1.32942 1.33977 1.86561 1.16293 1.60430 1.62215 1.22638 0.83744 0.96965 0.97589 1.20259 0.86439 0.85043 0.84827 1.90593 1.86892 1.35080 1.36734 1.41816 1.04771 1.36340 1.38957 1.19000 0.81919 1.21376 1.23890 0.92181 1.26106 0.93689 1.00767 1.00319 1.69787 0.99028 1.43805 1.44066 0.85408 0.80296 0.77868 0.78277 1.18038 1.19881 1.15148 1.22316 0.94434 0.95206 1.06270 1.21008 0.89688 0.84285 0.74702 1.90717 1.79218 1.22846 1.52581 0.91847 0.91544 0.87608 0.85796 0.89149 0.86120 0.86388 0.77050 0.90866 0.87233 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 10.96 127.77 1.40 2.37 16 2 N -0.62 -9.61 3.33 -842.91 -2.81 -12.42 16 3 C 0.12 1.40 6.71 86.83 0.58 1.98 16 4 C -0.09 -1.32 3.66 -10.48 -0.04 -1.36 16 5 H 0.16 1.67 8.14 -2.39 -0.02 1.65 16 6 C 0.48 10.60 7.19 71.24 0.51 11.11 16 7 O -0.52 -12.53 15.25 21.99 0.34 -12.19 16 8 O -0.34 -10.03 9.76 -45.06 -0.44 -10.47 16 9 C 0.07 2.02 5.94 71.24 0.42 2.45 16 10 C 0.45 19.56 7.86 87.66 0.69 20.25 16 11 O -0.61 -33.21 16.08 15.74 0.25 -32.95 16 12 N -0.58 -26.03 5.09 -306.98 -1.56 -27.59 16 13 C -0.33 -18.86 10.16 84.04 0.85 -18.00 16 14 H 0.06 4.06 7.39 -2.91 -0.02 4.04 16 15 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 16 N -0.93 -54.24 13.96 21.66 0.30 -53.94 16 17 Si 0.96 36.91 27.74 68.60 1.90 38.82 16 18 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 19 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 20 H -0.23 -7.24 6.52 99.48 0.65 -6.59 16 21 C -0.14 -2.63 6.41 30.59 0.20 -2.43 16 22 C 0.51 11.39 8.02 87.90 0.71 12.10 16 23 O -0.57 -17.72 17.59 -3.04 -0.05 -17.77 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.07 0.89 7.93 -2.39 -0.02 0.87 16 26 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.09 1.21 6.96 -2.39 -0.02 1.20 16 29 H 0.12 2.93 8.13 -2.39 -0.02 2.91 16 30 H 0.12 2.91 8.13 -2.39 -0.02 2.89 16 31 H 0.39 14.37 5.76 -92.71 -0.53 13.83 16 32 H 0.28 15.01 8.31 -92.70 -0.77 14.24 16 33 H 0.11 2.09 7.89 -2.39 -0.02 2.07 16 34 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -81.64 303.16 4.27 -77.38 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.55 Total: 22.70 kcal Atomic # 6 Polarization: 22.65 SS G_CDS: 5.79 Total: 28.44 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -4.07 Total: -93.95 kcal Atomic # 8 Polarization: -73.48 SS G_CDS: 0.10 Total: -73.39 kcal Atomic # 14 Polarization: 36.91 SS G_CDS: 1.90 Total: 38.82 kcal Total: -81.64 4.27 -77.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240142.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.694 kcal (2) G-P(sol) polarization free energy of solvation -81.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds