Wall clock time and date at job start Mon Mar 30 2020 01:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46765 * 124.34663 * 2 1 4 4 C 1.54478 * 105.46982 * 197.01465 * 3 2 1 5 5 H 1.08999 * 110.96907 * 92.70742 * 4 3 2 6 6 C 1.50705 * 110.96928 * 216.42765 * 4 3 2 7 7 O 1.20828 * 119.99564 * 0.02562 * 6 4 3 8 8 O 1.34222 * 119.99953 * 180.02562 * 6 4 3 9 9 C 1.45208 * 116.99698 * 180.02562 * 8 6 4 10 10 C 1.50703 * 109.47186 * 180.02562 * 9 8 6 11 11 O 1.21296 * 119.99741 * 359.97438 * 10 9 8 12 12 N 1.34768 * 120.00202 * 179.97438 * 10 9 8 13 13 C 1.37098 * 120.00261 * 179.97438 * 12 10 9 14 14 H 1.08004 * 119.99704 * 0.02562 * 13 12 10 15 15 C 1.38942 * 120.00406 * 180.02562 * 13 12 10 16 16 N 1.31413 * 120.00099 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00133 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47214 * 90.00303 * 17 15 13 19 19 H 1.48504 * 109.46898 * 209.99738 * 17 15 13 20 20 H 1.48496 * 109.47254 * 329.99531 * 17 15 13 21 21 C 1.54625 * 101.76675 * 334.58297 * 4 3 2 22 22 C 1.34413 * 124.34853 * 179.69940 * 2 1 3 23 23 O 1.21278 * 124.94446 * 359.57287 * 22 2 1 24 24 H 1.09001 * 109.47060 * 90.00488 * 1 2 3 25 25 H 1.09004 * 109.47073 * 209.99977 * 1 2 3 26 26 H 1.09000 * 109.47212 * 330.00059 * 1 2 3 27 27 H 1.08994 * 110.24801 * 316.01702 * 3 2 1 28 28 H 1.09000 * 110.24581 * 78.01201 * 3 2 1 29 29 H 1.08998 * 109.47266 * 299.99692 * 9 8 6 30 30 H 1.09002 * 109.46803 * 60.00085 * 9 8 6 31 31 H 0.97005 * 119.99839 * 0.02562 * 12 10 9 32 32 H 0.96997 * 120.00587 * 180.02562 * 16 15 13 33 33 H 1.09002 * 110.48493 * 143.47881 * 21 4 3 34 34 H 1.08997 * 110.48708 * 265.98428 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7010 0.7487 -0.4357 5 1 3.8269 0.8448 -1.5141 6 6 4.7717 1.5130 0.2997 7 8 4.4644 2.3584 1.1065 8 8 6.0665 1.2547 0.0583 9 6 7.0431 2.0289 0.8035 10 6 8.4325 1.6043 0.4026 11 8 8.5845 0.7344 -0.4289 12 7 9.5059 2.1911 0.9680 13 6 10.7698 1.8045 0.6037 14 1 10.9052 1.0299 -0.1367 15 6 11.8765 2.4090 1.1870 16 7 11.7118 3.3511 2.0883 17 14 13.5986 1.8827 0.6901 18 1 14.0591 2.7115 -0.4529 19 1 14.5227 2.0656 1.8381 20 1 13.5831 0.4527 0.2902 21 6 3.6898 -0.7377 -0.0100 22 6 2.2235 -1.1097 0.0058 23 8 1.7946 -2.2441 0.0192 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.8984 1.9383 -0.7101 28 1 2.3305 1.6430 1.0004 29 1 6.9102 3.0884 0.5849 30 1 6.9044 1.8578 1.8710 31 1 9.3843 2.8865 1.6333 32 1 12.4843 3.7734 2.4953 33 1 4.2327 -1.3458 -0.7336 34 1 4.1216 -0.8532 0.9841 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731240143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:36 Heat of formation + Delta-G solvation = -149.439923 kcal Electronic energy + Delta-G solvation = -20028.337703 eV Core-core repulsion = 16540.750244 eV Total energy + Delta-G solvation = -3487.587460 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.19024 -39.95829 -38.21841 -36.77433 -36.10225 -34.04837 -33.34675 -31.42365 -28.81010 -28.01018 -27.15579 -24.80952 -23.57362 -20.65786 -19.82744 -19.63014 -18.14073 -18.07016 -17.15733 -16.80511 -16.29526 -16.03906 -15.62085 -15.19901 -14.56919 -14.36230 -14.06686 -13.98080 -13.76932 -13.51975 -13.02253 -12.75906 -12.59613 -12.38381 -12.16175 -11.88037 -11.65159 -11.59980 -11.16287 -10.67926 -10.54013 -10.46537 -10.32934 -10.07352 -9.64186 -9.06825 -8.57623 -8.12283 -6.53584 -3.95806 2.04888 2.30248 2.34764 2.77803 3.10895 3.21697 3.27639 3.68868 3.84949 4.00134 4.09902 4.42632 4.49761 4.73254 4.91813 4.98817 5.00710 5.10951 5.14805 5.28004 5.37584 5.43876 5.52891 5.53580 5.61762 5.99066 6.10754 6.46245 6.71832 7.44565 7.64749 7.84937 7.90527 8.44030 9.03441 9.34999 9.84542 10.63559 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.049468 B = 0.003165 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.882231 B = 8845.488322 C = 9227.915797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.625 5.625 3 C 0.115 3.885 4 C -0.095 4.095 5 H 0.132 0.868 6 C 0.472 3.528 7 O -0.507 6.507 8 O -0.319 6.319 9 C 0.060 3.940 10 C 0.437 3.563 11 O -0.575 6.575 12 N -0.552 5.552 13 C -0.303 4.303 14 H 0.106 0.894 15 C 0.026 3.974 16 N -0.897 5.897 17 Si 0.934 3.066 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.268 1.268 21 C -0.142 4.142 22 C 0.521 3.479 23 O -0.527 6.527 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.395 0.605 32 H 0.274 0.726 33 H 0.122 0.878 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.163 -0.469 -2.356 18.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.361 5.361 3 C -0.008 4.008 4 C -0.115 4.115 5 H 0.150 0.850 6 C 0.313 3.687 7 O -0.396 6.396 8 O -0.233 6.233 9 C -0.017 4.017 10 C 0.221 3.779 11 O -0.459 6.459 12 N -0.189 5.189 13 C -0.432 4.432 14 H 0.124 0.876 15 C -0.177 4.177 16 N -0.537 5.537 17 Si 0.760 3.240 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.183 4.183 22 C 0.309 3.691 23 O -0.403 6.403 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.228 0.772 32 H 0.084 0.916 33 H 0.140 0.860 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -18.285 -1.290 -2.548 18.506 hybrid contribution 0.837 0.599 0.363 1.092 sum -17.447 -0.690 -2.185 17.597 Atomic orbital electron populations 1.21563 0.77537 1.03349 1.02063 1.48192 1.06763 1.07142 1.73977 1.22052 0.87531 0.87106 1.04147 1.21832 0.91624 0.95264 1.02796 0.85006 1.23012 0.83750 0.81292 0.80605 1.90674 1.83182 1.32292 1.33477 1.86548 1.14890 1.59971 1.61842 1.22817 0.87297 0.95507 0.96116 1.19291 0.84619 0.87009 0.86941 1.90573 1.85783 1.33853 1.35738 1.41704 1.04728 1.35026 1.37424 1.19729 0.80724 1.20188 1.22564 0.87572 1.25315 1.00462 0.95954 0.95976 1.69608 1.32206 1.24985 1.26938 0.85797 0.80806 0.79335 0.78017 1.20238 1.20794 1.19235 1.22331 0.95238 0.94417 1.06265 1.20781 0.88897 0.84384 0.75079 1.90740 1.78436 1.20978 1.50175 0.92353 0.90512 0.90791 0.89116 0.88749 0.89344 0.89377 0.77152 0.91584 0.86000 0.86954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 10.97 59.85 0.66 1.32 16 2 N -0.63 -5.81 3.33 -180.28 -0.60 -6.41 16 3 C 0.11 0.93 6.71 -3.12 -0.02 0.91 16 4 C -0.10 -0.91 3.66 -90.14 -0.33 -1.24 16 5 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 6 C 0.47 6.29 7.19 36.01 0.26 6.54 16 7 O -0.51 -7.52 15.25 -18.75 -0.29 -7.81 16 8 O -0.32 -5.33 9.76 -45.88 -0.45 -5.77 16 9 C 0.06 1.06 5.94 36.01 0.21 1.28 16 10 C 0.44 10.11 7.86 -10.99 -0.09 10.02 16 11 O -0.58 -15.48 16.08 -14.12 -0.23 -15.71 16 12 N -0.55 -13.54 5.29 -10.96 -0.06 -13.60 16 13 C -0.30 -8.19 9.68 -14.94 -0.14 -8.33 16 14 H 0.11 3.00 7.16 -52.48 -0.38 2.62 16 15 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 16 N -0.90 -23.64 13.05 55.50 0.72 -22.92 16 17 Si 0.93 20.38 29.55 -169.99 -5.02 15.35 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 C -0.14 -1.46 6.41 -26.74 -0.17 -1.64 16 22 C 0.52 6.17 8.02 -10.86 -0.09 6.09 16 23 O -0.53 -8.19 17.59 5.56 0.10 -8.09 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.59 7.92 -51.93 -0.41 0.18 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.85 6.96 -51.93 -0.36 0.48 16 29 H 0.09 1.40 8.13 -51.93 -0.42 0.98 16 30 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 31 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 32 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.11 1.17 7.89 -51.93 -0.41 0.76 16 LS Contribution 306.27 15.07 4.62 4.62 Total: -1.00 -33.82 306.27 -4.99 -38.81 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -3.97 Total: 6.01 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 0.19 Total: 15.52 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.07 Total: -42.92 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.86 Total: -37.38 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.82 -4.99 -38.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.631 kcal (2) G-P(sol) polarization free energy of solvation -33.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds