Wall clock time and date at job start Mon Mar 30 2020 01:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46765 * 124.34663 * 2 1 4 4 C 1.54478 * 105.46982 * 197.01465 * 3 2 1 5 5 H 1.08999 * 110.96907 * 92.70742 * 4 3 2 6 6 C 1.50705 * 110.96928 * 216.42765 * 4 3 2 7 7 O 1.20828 * 119.99564 * 0.02562 * 6 4 3 8 8 O 1.34222 * 119.99953 * 180.02562 * 6 4 3 9 9 C 1.45208 * 116.99698 * 180.02562 * 8 6 4 10 10 C 1.50703 * 109.47186 * 180.02562 * 9 8 6 11 11 O 1.21296 * 119.99741 * 359.97438 * 10 9 8 12 12 N 1.34768 * 120.00202 * 179.97438 * 10 9 8 13 13 C 1.37098 * 120.00261 * 179.97438 * 12 10 9 14 14 H 1.08004 * 119.99704 * 0.02562 * 13 12 10 15 15 C 1.38942 * 120.00406 * 180.02562 * 13 12 10 16 16 N 1.31413 * 120.00099 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00133 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47214 * 90.00303 * 17 15 13 19 19 H 1.48504 * 109.46898 * 209.99738 * 17 15 13 20 20 H 1.48496 * 109.47254 * 329.99531 * 17 15 13 21 21 C 1.54625 * 101.76675 * 334.58297 * 4 3 2 22 22 C 1.34413 * 124.34853 * 179.69940 * 2 1 3 23 23 O 1.21278 * 124.94446 * 359.57287 * 22 2 1 24 24 H 1.09001 * 109.47060 * 90.00488 * 1 2 3 25 25 H 1.09004 * 109.47073 * 209.99977 * 1 2 3 26 26 H 1.09000 * 109.47212 * 330.00059 * 1 2 3 27 27 H 1.08994 * 110.24801 * 316.01702 * 3 2 1 28 28 H 1.09000 * 110.24581 * 78.01201 * 3 2 1 29 29 H 1.08998 * 109.47266 * 299.99692 * 9 8 6 30 30 H 1.09002 * 109.46803 * 60.00085 * 9 8 6 31 31 H 0.97005 * 119.99839 * 0.02562 * 12 10 9 32 32 H 0.96997 * 120.00587 * 180.02562 * 16 15 13 33 33 H 1.09002 * 110.48493 * 143.47881 * 21 4 3 34 34 H 1.08997 * 110.48708 * 265.98428 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7010 0.7487 -0.4357 5 1 3.8269 0.8448 -1.5141 6 6 4.7717 1.5130 0.2997 7 8 4.4644 2.3584 1.1065 8 8 6.0665 1.2547 0.0583 9 6 7.0431 2.0289 0.8035 10 6 8.4325 1.6043 0.4026 11 8 8.5845 0.7344 -0.4289 12 7 9.5059 2.1911 0.9680 13 6 10.7698 1.8045 0.6037 14 1 10.9052 1.0299 -0.1367 15 6 11.8765 2.4090 1.1870 16 7 11.7118 3.3511 2.0883 17 14 13.5986 1.8827 0.6901 18 1 14.0591 2.7115 -0.4529 19 1 14.5227 2.0656 1.8381 20 1 13.5831 0.4527 0.2902 21 6 3.6898 -0.7377 -0.0100 22 6 2.2235 -1.1097 0.0058 23 8 1.7946 -2.2441 0.0192 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.8984 1.9383 -0.7101 28 1 2.3305 1.6430 1.0004 29 1 6.9102 3.0884 0.5849 30 1 6.9044 1.8578 1.8710 31 1 9.3843 2.8865 1.6333 32 1 12.4843 3.7734 2.4953 33 1 4.2327 -1.3458 -0.7336 34 1 4.1216 -0.8532 0.9841 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731240143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:36 Heat of formation + Delta-G solvation = -173.273142 kcal Electronic energy + Delta-G solvation = -20029.371189 eV Core-core repulsion = 16540.750244 eV Total energy + Delta-G solvation = -3488.620945 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.17744 -41.04206 -39.98893 -37.88667 -37.22799 -36.02003 -34.11770 -33.39848 -30.23041 -28.88838 -27.93802 -26.58673 -24.57956 -21.70322 -21.40479 -20.65190 -20.06206 -19.12221 -18.11626 -17.99850 -17.56329 -17.41961 -16.78976 -16.46368 -16.09284 -15.78921 -15.66100 -14.84588 -14.74750 -14.64233 -14.39184 -13.78027 -13.64688 -13.54360 -13.40312 -13.20248 -12.93367 -12.64251 -12.48393 -12.45798 -12.11985 -11.86452 -11.73048 -11.56372 -11.03984 -10.49512 -10.10528 -9.81593 -8.51718 -6.02009 0.98936 1.25003 1.36841 1.39714 1.44789 1.57320 1.88965 1.98918 2.30084 2.92912 3.13034 3.14402 3.27373 3.61495 3.70947 3.96184 4.13654 4.19164 4.24852 4.34151 4.40412 4.54702 4.63688 4.74877 4.83225 4.87891 5.28592 5.38239 5.42325 5.90163 5.92624 6.45317 6.57732 6.98718 7.04374 7.41678 7.95246 8.65250 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.049468 B = 0.003165 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.882231 B = 8845.488322 C = 9227.915797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.619 5.619 3 C 0.119 3.881 4 C -0.086 4.086 5 H 0.158 0.842 6 C 0.476 3.524 7 O -0.520 6.520 8 O -0.338 6.338 9 C 0.071 3.929 10 C 0.436 3.564 11 O -0.618 6.618 12 N -0.559 5.559 13 C -0.337 4.337 14 H 0.084 0.916 15 C -0.008 4.008 16 N -0.916 5.916 17 Si 0.996 3.004 18 H -0.269 1.269 19 H -0.271 1.271 20 H -0.271 1.271 21 C -0.142 4.142 22 C 0.516 3.484 23 O -0.573 6.573 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.123 0.877 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.400 0.600 32 H 0.281 0.719 33 H 0.125 0.875 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.891 0.670 -2.557 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.353 5.353 3 C -0.004 4.004 4 C -0.105 4.105 5 H 0.176 0.824 6 C 0.319 3.681 7 O -0.409 6.409 8 O -0.253 6.253 9 C -0.006 4.006 10 C 0.222 3.778 11 O -0.504 6.504 12 N -0.196 5.196 13 C -0.466 4.466 14 H 0.102 0.898 15 C -0.209 4.209 16 N -0.556 5.556 17 Si 0.819 3.181 18 H -0.194 1.194 19 H -0.195 1.195 20 H -0.196 1.196 21 C -0.182 4.182 22 C 0.304 3.696 23 O -0.453 6.453 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.119 0.881 27 H 0.141 0.859 28 H 0.108 0.892 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.235 0.765 32 H 0.090 0.910 33 H 0.143 0.857 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.047 -0.090 -2.727 19.242 hybrid contribution 0.972 0.277 0.441 1.103 sum -18.075 0.187 -2.287 18.220 Atomic orbital electron populations 1.21782 0.76020 1.04058 1.03227 1.48332 1.07819 1.06757 1.72346 1.22164 0.86440 0.86906 1.04841 1.21934 0.90965 0.93895 1.03734 0.82448 1.23601 0.82916 0.81183 0.80368 1.90672 1.83027 1.33083 1.34095 1.86550 1.16233 1.60313 1.62188 1.22554 0.84461 0.96500 0.97063 1.20170 0.86416 0.85655 0.85513 1.90539 1.86920 1.35551 1.37422 1.41746 1.04673 1.35414 1.37812 1.19707 0.82474 1.20960 1.23480 0.89792 1.26088 1.03623 0.95613 0.95563 1.69662 1.33492 1.25253 1.27156 0.84885 0.76397 0.78686 0.78141 1.19447 1.19537 1.19589 1.22311 0.94510 0.95126 1.06254 1.20977 0.89633 0.84286 0.74709 1.90713 1.79196 1.22780 1.52608 0.90959 0.91778 0.88145 0.85864 0.89217 0.87085 0.87417 0.76534 0.90994 0.85661 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 10.97 127.77 1.40 2.44 16 2 N -0.62 -10.19 3.33 -842.88 -2.81 -13.00 16 3 C 0.12 1.56 6.71 86.83 0.58 2.15 16 4 C -0.09 -1.43 3.66 -10.48 -0.04 -1.47 16 5 H 0.16 1.87 8.14 -2.39 -0.02 1.85 16 6 C 0.48 11.70 7.19 71.24 0.51 12.21 16 7 O -0.52 -14.19 15.25 21.96 0.33 -13.85 16 8 O -0.34 -10.84 9.76 -44.99 -0.44 -11.28 16 9 C 0.07 2.43 5.94 71.24 0.42 2.85 16 10 C 0.44 20.26 7.86 87.66 0.69 20.95 16 11 O -0.62 -33.83 16.08 15.72 0.25 -33.58 16 12 N -0.56 -27.70 5.29 -306.99 -1.62 -29.32 16 13 C -0.34 -18.52 9.68 84.04 0.81 -17.70 16 14 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 15 C -0.01 -0.42 5.50 84.92 0.47 0.05 16 16 N -0.92 -47.74 13.05 21.66 0.28 -47.46 16 17 Si 1.00 41.39 29.55 68.60 2.03 43.41 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 19 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 21 C -0.14 -2.77 6.41 30.59 0.20 -2.58 16 22 C 0.52 11.81 8.02 87.90 0.71 12.51 16 23 O -0.57 -17.98 17.59 -3.02 -0.05 -18.04 16 24 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.93 7.92 -2.38 -0.02 0.91 16 26 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.09 1.35 6.96 -2.39 -0.02 1.33 16 29 H 0.11 3.30 8.13 -2.39 -0.02 3.28 16 30 H 0.11 3.26 8.13 -2.39 -0.02 3.24 16 31 H 0.40 18.61 7.90 -92.70 -0.73 17.88 16 32 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 33 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.11 2.20 7.89 -2.39 -0.02 2.18 16 Total: -1.00 -73.61 306.27 4.13 -69.48 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.41 Total: 22.22 kcal Atomic # 6 Polarization: 25.67 SS G_CDS: 5.75 Total: 31.42 kcal Atomic # 7 Polarization: -85.63 SS G_CDS: -4.15 Total: -89.78 kcal Atomic # 8 Polarization: -76.85 SS G_CDS: 0.10 Total: -76.75 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -73.61 4.13 -69.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.794 kcal (2) G-P(sol) polarization free energy of solvation -73.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds