Wall clock time and date at job start Mon Mar 30 2020 01:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46767 * 124.34504 * 2 1 4 4 C 1.54485 * 105.47000 * 162.96144 * 3 2 1 5 5 H 1.08993 * 110.97191 * 267.26711 * 4 3 2 6 6 C 1.50696 * 110.96796 * 143.53623 * 4 3 2 7 7 O 1.21299 * 120.00093 * 331.55622 * 6 4 3 8 8 N 1.34780 * 120.00100 * 151.56082 * 6 4 3 9 9 C 1.37097 * 120.00135 * 175.16123 * 8 6 4 10 10 H 1.08007 * 120.00085 * 330.24119 * 9 8 6 11 11 C 1.38942 * 120.00229 * 150.24275 * 9 8 6 12 12 N 1.31411 * 120.00251 * 322.72285 * 11 9 8 13 13 Si 1.86801 * 120.00141 * 142.72125 * 11 9 8 14 14 H 1.48501 * 109.47208 * 270.00019 * 13 11 9 15 15 H 1.48501 * 109.47420 * 150.00160 * 13 11 9 16 16 H 1.48498 * 109.47291 * 30.00274 * 13 11 9 17 17 C 1.46499 * 119.99842 * 355.15380 * 8 6 4 18 18 C 1.50696 * 109.47012 * 92.27065 * 17 8 6 19 19 O 1.20825 * 119.99918 * 359.97438 * 18 17 8 20 20 O 1.34227 * 120.00048 * 180.02562 * 18 17 8 21 21 C 1.54631 * 101.79769 * 25.40102 * 4 3 2 22 22 C 1.34414 * 124.35407 * 179.97438 * 2 1 3 23 23 O 1.21287 * 124.93930 * 0.42977 * 22 2 1 24 24 H 1.09005 * 109.46908 * 89.99966 * 1 2 3 25 25 H 1.08995 * 109.46857 * 209.99310 * 1 2 3 26 26 H 1.08996 * 109.47010 * 329.99652 * 1 2 3 27 27 H 1.08999 * 110.24241 * 43.96862 * 3 2 1 28 28 H 1.08997 * 110.32328 * 282.00259 * 3 2 1 29 29 H 0.97006 * 119.99699 * 356.28863 * 12 11 9 30 30 H 1.09002 * 109.47210 * 212.27187 * 17 8 6 31 31 H 1.09004 * 109.46933 * 332.26801 * 17 8 6 32 32 H 0.96696 * 117.00415 * 180.02562 * 20 18 17 33 33 H 1.09002 * 110.48671 * 93.89585 * 21 4 3 34 34 H 1.08996 * 110.48803 * 216.53770 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7009 0.7489 0.4363 5 1 3.8266 0.8457 1.5146 6 6 4.7717 1.5124 -0.2995 7 8 4.5510 1.9495 -1.4093 8 7 5.9746 1.7096 0.2755 9 6 6.9808 2.3166 -0.4307 10 1 7.0260 2.2119 -1.5047 11 6 7.9424 3.0666 0.2352 12 7 7.6014 3.8041 1.2680 13 14 9.7200 3.0264 -0.3376 14 1 10.4419 1.9354 0.3651 15 1 10.3684 4.3267 -0.0309 16 1 9.7628 2.7852 -1.8022 17 6 6.2070 1.2753 1.6552 18 6 6.7726 -0.1215 1.6536 19 8 6.9618 -0.6955 0.6074 20 8 7.0653 -0.7284 2.8146 21 6 3.6905 -0.7379 0.0116 22 6 2.2236 -1.1097 0.0005 23 8 1.7947 -2.2442 -0.0065 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 1.8981 1.9384 0.7100 28 1 2.3312 1.6443 -0.9998 29 1 6.6702 3.8675 1.5324 30 1 6.9131 1.9527 2.1354 31 1 5.2645 1.2851 2.2028 32 1 7.4264 -1.6239 2.7630 33 1 4.1209 -0.8536 -0.9831 34 1 4.2331 -1.3453 0.7360 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737510102.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:30 Heat of formation + Delta-G solvation = -139.053635 kcal Electronic energy + Delta-G solvation = -21668.431300 eV Core-core repulsion = 18181.294224 eV Total energy + Delta-G solvation = -3487.137076 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.60922 -39.75670 -38.42696 -36.20036 -35.68019 -34.97360 -32.83313 -31.75305 -28.09653 -27.57125 -26.91681 -24.81398 -22.50841 -21.52171 -19.56686 -19.03059 -17.78411 -17.68733 -17.04517 -16.59731 -16.11032 -15.67527 -15.29314 -15.00273 -14.61137 -14.11829 -13.83951 -13.59324 -13.33290 -13.00880 -12.85465 -12.49629 -12.34961 -12.22240 -12.16557 -11.63718 -11.18775 -11.14313 -10.96139 -10.81702 -10.30282 -10.26515 -10.15812 -9.78723 -9.15897 -8.76120 -8.57211 -8.08076 -6.92009 -4.09791 2.66985 2.69939 3.00770 3.13971 3.20738 3.30528 3.49806 3.67464 4.03377 4.36584 4.50366 4.62316 4.90980 4.96302 5.10656 5.20360 5.29934 5.35802 5.54986 5.61644 5.63640 5.74614 5.85359 5.97615 6.01284 6.15405 6.52644 6.87494 7.11237 7.60245 7.97873 8.23771 8.27768 8.38309 8.67772 9.11628 9.55530 10.34022 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.024965 B = 0.006404 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.302480 B = 4371.354523 C = 4954.876861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.623 5.623 3 C 0.118 3.882 4 C -0.125 4.125 5 H 0.098 0.902 6 C 0.471 3.529 7 O -0.558 6.558 8 N -0.424 5.424 9 C -0.405 4.405 10 H 0.094 0.906 11 C 0.015 3.985 12 N -0.853 5.853 13 Si 1.065 2.935 14 H -0.283 1.283 15 H -0.282 1.282 16 H -0.279 1.279 17 C 0.095 3.905 18 C 0.455 3.545 19 O -0.495 6.495 20 O -0.526 6.526 21 C -0.133 4.133 22 C 0.522 3.478 23 O -0.540 6.540 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.277 0.723 30 H 0.133 0.867 31 H 0.102 0.898 32 H 0.400 0.600 33 H 0.111 0.889 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.745 -4.166 5.161 9.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.358 5.358 3 C -0.005 4.005 4 C -0.148 4.148 5 H 0.116 0.884 6 C 0.259 3.741 7 O -0.440 6.440 8 N -0.144 5.144 9 C -0.531 4.531 10 H 0.111 0.889 11 C -0.194 4.194 12 N -0.486 5.486 13 Si 0.891 3.109 14 H -0.210 1.210 15 H -0.207 1.207 16 H -0.205 1.205 17 C -0.032 4.032 18 C 0.294 3.706 19 O -0.380 6.380 20 O -0.337 6.337 21 C -0.174 4.174 22 C 0.310 3.690 23 O -0.418 6.418 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.150 0.850 31 H 0.120 0.880 32 H 0.258 0.742 33 H 0.129 0.871 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.763 -3.695 4.645 8.273 hybrid contribution -1.193 -1.182 -0.198 1.691 sum -6.956 -4.877 4.447 9.589 Atomic orbital electron populations 1.21515 0.78181 1.02868 1.01866 1.48194 1.06454 1.07646 1.73499 1.22048 0.88137 0.86427 1.03859 1.22306 0.95424 0.95533 1.01503 0.88391 1.19580 0.82249 0.84195 0.88038 1.90561 1.79664 1.53377 1.20355 1.43196 1.10122 1.50271 1.10763 1.20226 1.05133 1.33074 0.94688 0.88870 1.26376 1.05607 0.91225 0.96157 1.70838 1.21713 1.27432 1.28582 0.83550 0.73913 0.76820 0.76615 1.20973 1.20748 1.20481 1.21277 1.03047 0.89816 0.89044 1.24669 0.75214 0.89680 0.81014 1.90703 1.48814 1.65466 1.33020 1.84579 1.77375 1.34844 1.36951 1.22222 0.94222 0.95302 1.05615 1.20918 0.89254 0.84200 0.74650 1.90685 1.78801 1.21152 1.51142 0.92642 0.90852 0.91002 0.90146 0.88759 0.91204 0.84968 0.87982 0.74186 0.87053 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.07 10.96 59.85 0.66 1.73 16 2 N -0.62 -9.02 3.33 -180.26 -0.60 -9.62 16 3 C 0.12 1.73 6.87 -3.12 -0.02 1.71 16 4 C -0.13 -2.08 3.01 -90.14 -0.27 -2.35 16 5 H 0.10 1.39 5.81 -51.93 -0.30 1.09 16 6 C 0.47 10.36 6.68 -10.99 -0.07 10.29 16 7 O -0.56 -14.28 15.57 5.54 0.09 -14.20 16 8 N -0.42 -9.77 1.91 -116.10 -0.22 -9.99 16 9 C -0.40 -10.67 8.81 -14.94 -0.13 -10.80 16 10 H 0.09 2.70 7.79 -52.48 -0.41 2.29 16 11 C 0.02 0.39 4.60 -17.47 -0.08 0.31 16 12 N -0.85 -21.59 12.21 55.50 0.68 -20.91 16 13 Si 1.07 22.93 30.05 -169.99 -5.11 17.82 16 14 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 15 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 16 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 17 C 0.09 1.81 5.15 -5.20 -0.03 1.78 16 18 C 0.45 8.38 8.39 36.00 0.30 8.68 16 19 O -0.49 -10.66 17.17 -18.75 -0.32 -10.99 16 20 O -0.53 -7.53 13.42 -39.25 -0.53 -8.06 16 21 C -0.13 -2.25 6.41 -26.71 -0.17 -2.42 16 22 C 0.52 8.91 8.02 -10.83 -0.09 8.82 16 23 O -0.54 -10.69 17.60 5.55 0.10 -10.59 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.81 7.93 -51.93 -0.41 0.40 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.09 1.56 6.93 -51.93 -0.36 1.20 16 29 H 0.28 6.91 7.71 -40.82 -0.31 6.59 16 30 H 0.13 2.73 5.48 -51.93 -0.28 2.44 16 31 H 0.10 1.55 5.79 -51.93 -0.30 1.25 16 32 H 0.40 3.96 9.10 45.56 0.41 4.38 16 33 H 0.11 2.09 7.89 -51.93 -0.41 1.68 16 34 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 298.48 15.07 4.50 4.50 Total: -1.00 -33.42 298.48 -4.19 -37.61 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -2.86 Total: 6.70 kcal Atomic # 6 Polarization: 17.65 SS G_CDS: 0.09 Total: 17.74 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: -0.14 Total: -40.53 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -0.66 Total: -43.84 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.11 Total: 17.82 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.42 -4.19 -37.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737510102.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.446 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds