Wall clock time and date at job start Mon Mar 30 2020 01:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46766 * 124.35255 * 2 1 4 4 C 1.54474 * 105.47764 * 163.00597 * 3 2 1 5 5 H 1.09004 * 110.97159 * 143.56659 * 4 3 2 6 6 C 1.50692 * 110.97080 * 267.29881 * 4 3 2 7 7 O 1.21292 * 120.00150 * 10.58986 * 6 4 3 8 8 N 1.34785 * 120.00187 * 190.58888 * 6 4 3 9 9 C 1.37098 * 119.99565 * 354.58455 * 8 6 4 10 10 H 1.08004 * 120.00507 * 346.23038 * 9 8 6 11 11 C 1.38956 * 119.99666 * 166.23449 * 9 8 6 12 12 N 1.31405 * 119.99805 * 359.51585 * 11 9 8 13 13 Si 1.86803 * 119.99622 * 179.51018 * 11 9 8 14 14 H 1.48504 * 109.46893 * 60.00571 * 13 11 9 15 15 H 1.48505 * 109.46798 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47333 * 300.00055 * 13 11 9 17 17 C 1.46498 * 120.00277 * 174.58330 * 8 6 4 18 18 C 1.50699 * 109.47058 * 263.22352 * 17 8 6 19 19 O 1.20827 * 120.00078 * 5.50046 * 18 17 8 20 20 O 1.34233 * 119.99596 * 185.50575 * 18 17 8 21 21 C 1.54637 * 101.76396 * 25.41718 * 4 3 2 22 22 C 1.34425 * 124.34989 * 180.02562 * 2 1 3 23 23 O 1.21278 * 124.94215 * 0.41482 * 22 2 1 24 24 H 1.08997 * 109.47416 * 89.99802 * 1 2 3 25 25 H 1.09005 * 109.47266 * 210.00160 * 1 2 3 26 26 H 1.09002 * 109.47170 * 329.99888 * 1 2 3 27 27 H 1.08998 * 110.24509 * 44.00403 * 3 2 1 28 28 H 1.09004 * 110.24298 * 282.01051 * 3 2 1 29 29 H 0.97006 * 119.99684 * 179.97438 * 12 11 9 30 30 H 1.09009 * 109.46938 * 23.22241 * 17 8 6 31 31 H 1.09000 * 109.46962 * 143.22010 * 17 8 6 32 32 H 0.96696 * 116.99292 * 180.02562 * 20 18 17 33 33 H 1.09000 * 110.48484 * 93.87853 * 21 4 3 34 34 H 1.08997 * 110.48854 * 216.52344 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7011 0.7486 0.4351 5 1 4.4753 1.3015 -0.0970 6 6 3.8756 0.8811 1.9260 7 8 2.9174 1.1209 2.6299 8 7 5.0966 0.7330 2.4775 9 6 6.1589 0.3529 1.6986 10 1 5.9884 -0.0408 0.7074 11 6 7.4550 0.4740 2.1845 12 7 7.6630 0.9618 3.3869 13 14 8.9017 -0.0566 1.1286 14 1 8.9141 0.7350 -0.1278 15 1 10.1671 0.1727 1.8713 16 1 8.7740 -1.4998 0.8032 17 6 5.2885 0.9782 3.9090 18 6 5.8034 2.3796 4.1139 19 8 5.8967 3.1325 3.1736 20 8 6.1585 2.7912 5.3413 21 6 3.6898 -0.7379 0.0092 22 6 2.2234 -1.1098 -0.0005 23 8 1.7946 -2.2442 -0.0082 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.8986 1.9381 0.7104 28 1 2.3302 1.6431 -1.0003 29 1 8.5679 1.0460 3.7262 30 1 4.3373 0.8610 4.4284 31 1 6.0098 0.2642 4.3064 32 1 6.4826 3.6986 5.4232 33 1 4.1190 -0.8528 -0.9861 34 1 4.2328 -1.3461 0.7324 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737510105.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:32 Heat of formation + Delta-G solvation = -161.945996 kcal Electronic energy + Delta-G solvation = -21805.881508 eV Core-core repulsion = 18317.751745 eV Total energy + Delta-G solvation = -3488.129764 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.85348 -40.86693 -39.70474 -37.42604 -36.83590 -36.33039 -33.93201 -33.34220 -29.93442 -28.59155 -27.58206 -26.67442 -24.06237 -22.26337 -21.02588 -20.58413 -19.10792 -18.75057 -18.23874 -17.51747 -17.26776 -16.93874 -16.40743 -16.13332 -16.07448 -15.81547 -15.38668 -14.66865 -14.52363 -14.40182 -13.79367 -13.44574 -13.36953 -13.23720 -13.11807 -12.95725 -12.88824 -12.54968 -12.37947 -12.25039 -12.11793 -12.04758 -11.47642 -10.94098 -10.87421 -10.45932 -9.96715 -9.67196 -8.33565 -5.96710 1.42181 1.51151 1.53889 1.60021 1.75609 1.96845 2.15996 2.24879 2.55588 2.92246 3.23097 3.40584 3.60906 3.94412 4.06193 4.39768 4.46235 4.51681 4.65136 4.70143 4.74298 4.83843 4.92565 4.93497 4.99047 5.04536 5.41425 5.57002 5.68091 6.01049 6.09346 6.33073 7.06489 7.13762 7.43510 7.49882 7.84624 8.68369 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.007386 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.720518 B = 3789.917990 C = 4744.089230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.615 5.615 3 C 0.124 3.876 4 C -0.101 4.101 5 H 0.135 0.865 6 C 0.460 3.540 7 O -0.626 6.626 8 N -0.441 5.441 9 C -0.331 4.331 10 H 0.129 0.871 11 C -0.009 4.009 12 N -0.911 5.911 13 Si 0.999 3.001 14 H -0.266 1.266 15 H -0.291 1.291 16 H -0.260 1.260 17 C 0.153 3.847 18 C 0.517 3.483 19 O -0.567 6.567 20 O -0.522 6.522 21 C -0.134 4.134 22 C 0.510 3.490 23 O -0.585 6.585 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.116 0.884 29 H 0.273 0.727 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.409 0.591 33 H 0.145 0.855 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.476 1.683 -5.625 6.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.348 5.348 3 C 0.001 3.999 4 C -0.122 4.122 5 H 0.153 0.847 6 C 0.251 3.749 7 O -0.514 6.514 8 N -0.158 5.158 9 C -0.457 4.457 10 H 0.146 0.854 11 C -0.208 4.208 12 N -0.553 5.553 13 Si 0.823 3.177 14 H -0.191 1.191 15 H -0.217 1.217 16 H -0.185 1.185 17 C 0.027 3.973 18 C 0.360 3.640 19 O -0.458 6.458 20 O -0.333 6.333 21 C -0.174 4.174 22 C 0.299 3.701 23 O -0.466 6.466 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.134 0.866 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.144 0.856 32 H 0.267 0.733 33 H 0.162 0.838 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.195 1.065 -5.440 6.951 hybrid contribution 1.193 0.591 0.265 1.358 sum -3.002 1.656 -5.175 6.208 Atomic orbital electron populations 1.21669 0.76991 1.03191 1.02864 1.48247 1.07516 1.07300 1.71702 1.22135 0.87909 0.86727 1.03111 1.22071 0.99730 0.97781 0.92617 0.84692 1.20604 0.82518 0.80728 0.91095 1.90519 1.40561 1.56127 1.64232 1.43595 1.08147 1.57605 1.06494 1.20267 0.84469 1.40082 1.00921 0.85390 1.26124 1.01450 0.95813 0.97399 1.69515 1.22766 1.45270 1.17731 0.84858 0.75986 0.79104 0.77731 1.19110 1.21660 1.18480 1.20575 1.00222 0.91904 0.84578 1.23363 0.71944 0.89379 0.79291 1.90502 1.54681 1.57178 1.43404 1.84449 1.77835 1.37641 1.33404 1.22316 0.93383 0.95425 1.06251 1.21263 0.90479 0.84087 0.74280 1.90635 1.79665 1.22729 1.53617 0.90362 0.92496 0.89487 0.90394 0.86573 0.91659 0.90531 0.85619 0.73256 0.83752 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.31 10.96 127.77 1.40 3.71 16 2 N -0.62 -18.89 3.33 -842.91 -2.81 -21.70 16 3 C 0.12 3.48 6.60 86.83 0.57 4.05 16 4 C -0.10 -3.36 2.50 -10.48 -0.03 -3.39 16 5 H 0.14 4.08 7.63 -2.39 -0.02 4.06 16 6 C 0.46 20.51 6.84 87.65 0.60 21.11 16 7 O -0.63 -31.06 15.14 -3.07 -0.05 -31.11 16 8 N -0.44 -20.80 2.16 -639.58 -1.38 -22.18 16 9 C -0.33 -15.02 8.61 84.04 0.72 -14.30 16 10 H 0.13 5.09 5.58 -2.91 -0.02 5.08 16 11 C -0.01 -0.43 5.36 84.93 0.46 0.03 16 12 N -0.91 -44.24 7.87 21.66 0.17 -44.07 16 13 Si 1.00 36.97 29.55 68.60 2.03 38.99 16 14 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 15 H -0.29 -11.07 7.11 99.48 0.71 -10.36 16 16 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 17 C 0.15 7.25 5.43 85.63 0.46 7.71 16 18 C 0.52 24.48 5.83 71.24 0.42 24.89 16 19 O -0.57 -29.97 16.97 21.96 0.37 -29.60 16 20 O -0.52 -20.40 13.42 -51.45 -0.69 -21.09 16 21 C -0.13 -4.21 5.39 30.59 0.16 -4.04 16 22 C 0.51 18.29 8.02 87.90 0.71 18.99 16 23 O -0.58 -24.96 17.60 -3.02 -0.05 -25.01 16 24 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 1.56 7.93 -2.38 -0.02 1.54 16 26 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.08 2.45 7.20 -2.39 -0.02 2.43 16 28 H 0.12 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.27 12.90 8.31 -92.70 -0.77 12.13 16 30 H 0.08 3.58 7.17 -2.38 -0.02 3.56 16 31 H 0.13 6.09 6.36 -2.39 -0.02 6.07 16 32 H 0.41 12.12 9.10 -74.06 -0.67 11.45 16 33 H 0.14 3.42 8.14 -2.39 -0.02 3.40 16 34 H 0.09 3.35 7.27 -2.39 -0.02 3.33 16 Total: -1.00 -69.50 292.04 3.55 -65.96 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.48 Total: 31.02 kcal Atomic # 6 Polarization: 53.31 SS G_CDS: 5.48 Total: 58.78 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -4.02 Total: -87.95 kcal Atomic # 8 Polarization: -106.39 SS G_CDS: -0.42 Total: -106.80 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 38.99 kcal Total: -69.50 3.55 -65.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737510105.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.987 kcal (2) G-P(sol) polarization free energy of solvation -69.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds