Wall clock time and date at job start Mon Mar 30 2020 01:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99777 * 2 1 4 4 H 1.48500 * 109.46921 * 240.00274 * 3 2 1 5 5 H 1.48506 * 109.46938 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47056 * 120.00159 * 3 2 1 7 7 C 1.37873 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47240 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 7 12 12 S 1.81399 * 109.46810 * 180.02562 * 11 10 9 13 13 C 1.81398 * 103.00088 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.47199 * 179.97438 * 13 12 11 15 15 H 1.08997 * 110.37857 * 59.30066 * 14 13 12 16 16 C 1.54726 * 110.42498 * 181.68890 * 14 13 12 17 17 C 1.53879 * 101.89011 * 145.13684 * 16 14 13 18 18 C 1.52326 * 121.22685 * 200.92942 * 17 16 14 19 19 C 1.52335 * 121.21198 * 128.93068 * 17 16 14 20 20 C 1.50699 * 105.54679 * 344.95593 * 17 16 14 21 21 O 1.20826 * 125.25974 * 177.61919 * 20 17 16 22 22 O 1.34442 * 109.54550 * 357.72780 * 20 17 16 23 23 H 0.96992 * 120.00032 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47247 * 59.99954 * 9 7 2 25 25 H 1.08996 * 109.47258 * 300.00114 * 9 7 2 26 26 H 1.09000 * 109.46866 * 59.99931 * 10 9 7 27 27 H 1.09001 * 109.46611 * 300.00048 * 10 9 7 28 28 H 1.09000 * 109.47486 * 60.00167 * 11 10 9 29 29 H 1.09001 * 109.47362 * 299.99445 * 11 10 9 30 30 H 1.09002 * 109.46881 * 299.99990 * 13 12 11 31 31 H 1.09000 * 109.46946 * 60.00038 * 13 12 11 32 32 H 1.09003 * 110.94888 * 263.28709 * 16 14 13 33 33 H 1.08999 * 110.94903 * 26.94753 * 16 14 13 34 34 H 1.08999 * 117.51503 * 356.81859 * 18 17 16 35 35 H 1.08996 * 117.51750 * 141.94019 * 18 17 16 36 36 H 1.08995 * 117.51574 * 218.08833 * 19 17 16 37 37 H 1.09007 * 117.51050 * 3.16038 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 -0.0001 12 16 2.6592 -6.3658 0.0007 13 6 1.5810 -7.8246 0.0006 14 6 2.4380 -9.0922 0.0005 15 1 3.0827 -9.1145 0.8791 16 6 1.5396 -10.3512 -0.0423 17 6 2.3821 -11.3128 -0.8987 18 6 1.7452 -12.4971 -1.6144 19 6 2.6853 -12.7295 -0.4281 20 6 3.4290 -10.4535 -1.5594 21 8 4.3084 -10.8577 -2.2827 22 8 3.2359 -9.1674 -1.2187 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8902 26 1 2.8721 -3.6043 0.8905 27 1 2.8721 -3.6042 -0.8895 28 1 0.8541 -5.0446 -0.8903 29 1 0.8535 -5.0451 0.8897 30 1 0.9515 -7.8111 0.8903 31 1 0.9522 -7.8115 -0.8897 32 1 1.3855 -10.7542 0.9587 33 1 0.5862 -10.1335 -0.5235 34 1 0.6808 -12.6689 -1.4546 35 1 2.1180 -12.7446 -2.6083 36 1 3.6764 -13.1299 -0.6417 37 1 2.2398 -13.0539 0.5124 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762431227.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:58 Heat of formation + Delta-G solvation = -93.726592 kcal Electronic energy + Delta-G solvation = -17472.569009 eV Core-core repulsion = 14533.690675 eV Total energy + Delta-G solvation = -2938.878334 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.24804 -38.82176 -37.74092 -36.36596 -34.05063 -33.56494 -29.52804 -29.22063 -25.74256 -25.06315 -23.56421 -23.02439 -22.04211 -20.96757 -18.58869 -18.24779 -17.93104 -17.26160 -16.69123 -16.51130 -16.36064 -16.13018 -15.44114 -14.93743 -14.54955 -14.37992 -14.15609 -13.98308 -13.75941 -13.65147 -13.32484 -12.87137 -12.76536 -12.72197 -12.46643 -12.35512 -11.89743 -11.69424 -11.66027 -11.36844 -11.23277 -11.12867 -11.08182 -10.84831 -10.56645 -8.66033 -8.22191 -6.33062 0.60667 0.81720 1.39765 1.42553 1.50559 1.63558 2.05796 2.40354 2.69550 2.82784 3.11096 3.27376 3.30353 3.69105 3.88785 3.92659 4.03971 4.04625 4.10597 4.35436 4.56118 4.59448 4.60371 4.68328 4.81581 4.85126 4.90835 4.91886 4.96724 5.12439 5.15326 5.47817 5.67682 5.69091 5.81330 6.21857 6.32022 6.82186 7.36022 8.89314 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.055800 B = 0.002657 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.667444 B =10534.112122 C =10795.902913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.056 0.944 9 C 0.032 3.968 10 C -0.083 4.083 11 C -0.065 4.065 12 S -0.301 6.301 13 C -0.079 4.079 14 C 0.098 3.902 15 H 0.113 0.887 16 C -0.092 4.092 17 C -0.234 4.234 18 C -0.124 4.124 19 C -0.120 4.120 20 C 0.503 3.497 21 O -0.504 6.504 22 O -0.357 6.357 23 H 0.265 0.735 24 H -0.004 1.004 25 H 0.000 1.000 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.137 0.863 31 H 0.097 0.903 32 H 0.136 0.864 33 H 0.111 0.889 34 H 0.140 0.860 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.222 -27.510 3.095 27.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.007 4.007 10 C -0.122 4.122 11 C -0.213 4.213 12 S -0.073 6.073 13 C -0.227 4.227 14 C 0.043 3.957 15 H 0.131 0.869 16 C -0.130 4.130 17 C -0.236 4.236 18 C -0.161 4.161 19 C -0.157 4.157 20 C 0.347 3.653 21 O -0.391 6.391 22 O -0.274 6.274 23 H 0.074 0.926 24 H 0.014 0.986 25 H 0.019 0.981 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.155 0.845 31 H 0.116 0.884 32 H 0.154 0.846 33 H 0.130 0.870 34 H 0.158 0.842 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.221 -27.337 2.662 27.467 hybrid contribution -0.751 1.338 -0.358 1.576 sum -0.530 -25.998 2.304 26.105 Atomic orbital electron populations 1.70067 1.07639 1.27946 1.51443 1.25940 0.95813 1.03222 0.94602 0.85522 0.78341 0.78188 0.79152 1.19427 1.20539 1.19152 1.21644 0.93500 0.92481 1.50945 0.92525 1.18968 0.94116 0.92212 0.95380 1.21176 0.98065 0.91885 1.01032 1.23343 0.98610 0.94281 1.05040 1.87309 1.19164 1.02604 1.98192 1.23643 0.99247 0.91621 1.08171 1.23669 0.92195 0.95238 0.84637 0.86903 1.22583 0.97628 0.89924 1.02911 1.22312 1.01285 0.92692 1.07269 1.23072 1.01212 0.94226 0.97560 1.23141 1.01655 0.90118 1.00769 1.22694 0.82727 0.82313 0.77598 1.90647 1.35422 1.75641 1.37406 1.87268 1.68594 1.28101 1.43389 0.92628 0.98563 0.98120 0.92612 0.93257 0.90287 0.89309 0.84468 0.88447 0.84551 0.87019 0.84168 0.88952 0.88796 0.83876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 2 C 0.00 0.13 5.46 84.65 0.46 0.60 16 3 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.55 -31.65 9.11 25.60 0.23 -31.42 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.03 1.69 4.97 29.85 0.15 1.84 16 10 C -0.08 -3.51 5.16 30.60 0.16 -3.35 16 11 C -0.06 -2.15 5.94 71.98 0.43 -1.72 16 12 S -0.30 -8.90 21.51 -56.49 -1.22 -10.12 16 13 C -0.08 -1.40 5.63 71.98 0.41 -0.99 16 14 C 0.10 1.56 3.56 31.18 0.11 1.67 16 15 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 16 C -0.09 -0.71 6.48 31.48 0.20 -0.50 16 17 C -0.23 -3.05 2.44 -53.07 -0.13 -3.18 16 18 C -0.12 -1.10 10.28 30.42 0.31 -0.79 16 19 C -0.12 -0.99 10.27 30.42 0.31 -0.68 16 20 C 0.50 12.50 8.34 71.24 0.59 13.09 16 21 O -0.50 -16.44 18.00 21.61 0.39 -16.05 16 22 O -0.36 -9.30 10.53 -53.83 -0.57 -9.87 16 23 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 24 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 25 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 26 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.08 2.56 8.14 -2.39 -0.02 2.55 16 29 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.14 0.16 8.13 -2.39 -0.02 0.14 16 33 H 0.11 0.57 7.93 -2.39 -0.02 0.55 16 34 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.14 0.26 8.14 -2.38 -0.02 0.24 16 Total: -1.00 -75.37 329.78 5.19 -70.17 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: 1.04 Total: 0.76 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 3.24 Total: -25.43 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.28 Total: -56.14 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.18 Total: -25.92 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.22 Total: -10.12 kcal Total: -75.37 5.19 -70.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762431227.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.555 kcal (2) G-P(sol) polarization free energy of solvation -75.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds