Wall clock time and date at job start Mon Mar 30 2020 01:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00367 * 2 1 4 4 H 1.48498 * 109.47374 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46930 * 299.99844 * 3 2 1 6 6 H 1.48501 * 109.47361 * 59.99690 * 3 2 1 7 7 C 1.37880 * 119.99556 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99699 * 178.50838 * 7 2 1 9 9 C 1.50690 * 120.00118 * 358.50725 * 7 2 1 10 10 C 1.52997 * 115.55337 * 84.97177 * 9 7 2 11 11 O 1.45201 * 109.47027 * 39.88785 * 10 9 7 12 12 C 1.34230 * 116.99998 * 179.97438 * 11 10 9 13 13 O 1.20823 * 119.99771 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99744 * 179.97438 * 12 11 10 15 15 H 1.08996 * 109.68717 * 335.32403 * 14 12 11 16 16 C 1.53105 * 109.57531 * 215.00228 * 14 12 11 17 17 C 1.52576 * 109.95512 * 177.17355 * 16 14 12 18 18 C 1.52582 * 110.73167 * 70.67589 * 17 16 14 19 19 C 1.53103 * 109.95363 * 289.32335 * 18 17 16 20 20 S 1.81747 * 109.57514 * 95.65093 * 14 12 11 21 21 C 1.53008 * 117.51747 * 230.67352 * 9 7 2 22 22 C 1.52999 * 60.00252 * 107.47925 * 21 9 7 23 23 H 0.97005 * 119.99543 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46976 * 279.89431 * 10 9 7 25 25 H 1.09002 * 109.47443 * 159.89058 * 10 9 7 26 26 H 1.08997 * 109.38529 * 57.01927 * 16 14 12 27 27 H 1.09006 * 109.38674 * 297.31938 * 16 14 12 28 28 H 1.09005 * 109.22702 * 190.99995 * 17 16 14 29 29 H 1.09005 * 109.22706 * 310.35177 * 17 16 14 30 30 H 1.08995 * 109.38627 * 49.47164 * 18 17 16 31 31 H 1.08994 * 109.38941 * 169.17516 * 18 17 16 32 32 H 1.08992 * 109.57369 * 182.82724 * 19 18 17 33 33 H 1.08998 * 109.57313 * 303.22138 * 19 18 17 34 34 H 1.09003 * 117.49780 * 214.97063 * 21 9 7 35 35 H 1.09001 * 117.49734 * 359.97438 * 21 9 7 36 36 H 1.08993 * 117.50254 * 252.51097 * 22 21 9 37 37 H 1.08997 * 117.49447 * 107.48630 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8906 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0843 -1.1943 -0.0238 9 6 1.2513 -2.4989 0.0351 10 6 0.7857 -3.0283 -1.3227 11 8 1.8230 -2.7999 -2.3128 12 6 1.5704 -3.2100 -3.5657 13 8 0.5173 -3.7417 -3.8265 14 6 2.5999 -3.0061 -4.6472 15 1 3.2502 -2.1723 -4.3826 16 6 1.8975 -2.7075 -5.9744 17 6 2.9325 -2.4304 -7.0606 18 6 3.6724 -3.7096 -7.4405 19 6 4.6001 -4.1352 -6.2993 20 16 3.5927 -4.5167 -4.8354 21 6 1.6663 -3.5269 1.0897 22 6 0.3499 -2.7624 1.2430 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1239 -2.5082 -1.6230 25 1 0.5850 -4.0970 -1.2467 26 1 1.2550 -1.8351 -5.8555 27 1 1.2903 -3.5655 -6.2635 28 1 2.4301 -2.0312 -7.9417 29 1 3.6499 -1.6962 -6.6939 30 1 2.9494 -4.5020 -7.6338 31 1 4.2625 -3.5328 -8.3397 32 1 5.1623 -5.0204 -6.5965 33 1 5.2893 -3.3234 -6.0669 34 1 1.6076 -4.5804 0.8160 35 1 2.4846 -3.2597 1.7584 36 1 0.3019 -1.9923 2.0128 37 1 -0.5748 -3.3130 1.0702 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783389877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:04 Heat of formation + Delta-G solvation = -75.466158 kcal Electronic energy + Delta-G solvation = -18847.516178 eV Core-core repulsion = 15909.429676 eV Total energy + Delta-G solvation = -2938.086502 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.86297 -37.17208 -36.50199 -35.22283 -31.95959 -31.90396 -28.22477 -26.64285 -25.25870 -23.74254 -21.17936 -20.94581 -20.33942 -19.27636 -17.29962 -17.06371 -16.46699 -15.57491 -15.49688 -14.79560 -14.63206 -14.34592 -13.89853 -13.65392 -13.31957 -13.21752 -12.78840 -12.26737 -12.03309 -11.70267 -11.66769 -11.52030 -11.09626 -10.98608 -10.88045 -10.82015 -10.50768 -10.31784 -10.05471 -9.82344 -9.76068 -9.50428 -8.91418 -8.45891 -8.13355 -7.72928 -6.04786 -4.09382 1.27473 2.31034 2.98526 3.27149 3.27864 3.35536 3.40239 4.39914 4.43291 4.52904 4.69186 4.77071 5.04647 5.12836 5.24839 5.27212 5.31306 5.39033 5.49647 5.61528 5.77522 5.78549 5.90192 5.98589 6.12505 6.20344 6.31509 6.48511 6.67387 6.76210 7.01942 7.13344 7.35421 7.48990 7.88205 8.30448 8.46643 8.91664 9.55681 11.04961 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.020878 B = 0.005533 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.808617 B = 5059.162771 C = 5665.629769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.068 3.932 3 Si 0.891 3.109 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.479 4.479 8 H 0.063 0.937 9 C 0.033 3.967 10 C 0.117 3.883 11 O -0.316 6.316 12 C 0.474 3.526 13 O -0.510 6.510 14 C -0.054 4.054 15 H 0.120 0.880 16 C -0.110 4.110 17 C -0.128 4.128 18 C -0.123 4.123 19 C -0.088 4.088 20 S -0.215 6.215 21 C -0.209 4.209 22 C -0.144 4.144 23 H 0.259 0.741 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.625 -5.410 -12.934 15.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.517 4.517 8 H 0.081 0.919 9 C 0.033 3.967 10 C 0.044 3.956 11 O -0.230 6.230 12 C 0.315 3.685 13 O -0.400 6.400 14 C -0.183 4.183 15 H 0.138 0.862 16 C -0.149 4.149 17 C -0.166 4.166 18 C -0.162 4.162 19 C -0.236 4.236 20 S 0.011 5.989 21 C -0.246 4.246 22 C -0.181 4.181 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.156 -6.360 -12.314 15.165 hybrid contribution 0.244 2.019 -0.625 2.127 sum 6.400 -4.342 -12.939 15.074 Atomic orbital electron populations 1.70012 1.05861 1.26408 1.49848 1.24993 0.94848 0.98984 0.94660 0.86545 0.80327 0.83685 0.77550 1.19566 1.21079 1.20990 1.20349 0.92561 0.88005 1.50750 0.91856 1.18788 0.99197 0.94374 0.84352 1.22786 0.88342 0.97300 0.87178 1.86596 1.46912 1.72586 1.16885 1.22394 0.86367 0.75674 0.84073 1.90607 1.26205 1.40230 1.82912 1.22905 0.98620 1.00673 0.96127 0.86218 1.21681 0.98071 1.04129 0.90977 1.21538 0.98281 0.97758 0.98980 1.21750 0.98650 0.98514 0.97294 1.23553 0.99418 1.05544 0.95114 1.87166 1.48834 1.23662 1.39220 1.23119 0.99346 0.95615 1.06488 1.22523 0.91671 1.01325 1.02609 0.93082 0.91172 0.94044 0.90100 0.89297 0.90464 0.91362 0.90363 0.90684 0.87400 0.89456 0.91523 0.90015 0.89323 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.99 12.80 55.43 0.71 -24.28 16 2 C 0.07 1.85 5.41 -17.82 -0.10 1.75 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.48 -13.08 8.24 -34.44 -0.28 -13.36 16 8 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 9 C 0.03 0.84 1.81 -155.66 -0.28 0.56 16 10 C 0.12 2.83 5.53 37.16 0.21 3.03 16 11 O -0.32 -7.33 9.61 -39.26 -0.38 -7.71 16 12 C 0.47 9.65 6.98 36.00 0.25 9.90 16 13 O -0.51 -11.23 16.08 -18.75 -0.30 -11.53 16 14 C -0.05 -0.84 3.01 -27.83 -0.08 -0.92 16 15 H 0.12 1.77 8.14 -51.93 -0.42 1.35 16 16 C -0.11 -1.41 4.65 -26.89 -0.13 -1.53 16 17 C -0.13 -1.20 5.61 -27.16 -0.15 -1.35 16 18 C -0.12 -1.03 5.75 -26.89 -0.15 -1.18 16 19 C -0.09 -0.83 6.46 37.21 0.24 -0.59 16 20 S -0.22 -3.07 21.68 -107.50 -2.33 -5.40 16 21 C -0.21 -4.60 9.88 -26.73 -0.26 -4.86 16 22 C -0.14 -3.37 9.33 -26.73 -0.25 -3.62 16 23 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 24 H 0.07 1.81 8.13 -51.93 -0.42 1.39 16 25 H 0.04 0.93 7.94 -51.93 -0.41 0.52 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.09 1.21 7.87 -51.93 -0.41 0.80 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 35 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 37 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 321.26 15.07 4.84 4.84 Total: -1.00 -30.17 321.26 -9.33 -39.50 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.85 Total: 0.71 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.00 Total: -12.18 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.71 Total: -24.28 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.68 Total: -19.24 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -2.33 Total: -5.40 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.17 -9.33 -39.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783389877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.968 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds