Wall clock time and date at job start Mon Mar 30 2020 01:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00367 * 2 1 4 4 H 1.48498 * 109.47374 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46930 * 299.99844 * 3 2 1 6 6 H 1.48501 * 109.47361 * 59.99690 * 3 2 1 7 7 C 1.37880 * 119.99556 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99699 * 178.50838 * 7 2 1 9 9 C 1.50690 * 120.00118 * 358.50725 * 7 2 1 10 10 C 1.52997 * 115.55337 * 84.97177 * 9 7 2 11 11 O 1.45201 * 109.47027 * 39.88785 * 10 9 7 12 12 C 1.34230 * 116.99998 * 179.97438 * 11 10 9 13 13 O 1.20823 * 119.99771 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99744 * 179.97438 * 12 11 10 15 15 H 1.08996 * 109.68717 * 335.32403 * 14 12 11 16 16 C 1.53105 * 109.57531 * 215.00228 * 14 12 11 17 17 C 1.52576 * 109.95512 * 177.17355 * 16 14 12 18 18 C 1.52582 * 110.73167 * 70.67589 * 17 16 14 19 19 C 1.53103 * 109.95363 * 289.32335 * 18 17 16 20 20 S 1.81747 * 109.57514 * 95.65093 * 14 12 11 21 21 C 1.53008 * 117.51747 * 230.67352 * 9 7 2 22 22 C 1.52999 * 60.00252 * 107.47925 * 21 9 7 23 23 H 0.97005 * 119.99543 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46976 * 279.89431 * 10 9 7 25 25 H 1.09002 * 109.47443 * 159.89058 * 10 9 7 26 26 H 1.08997 * 109.38529 * 57.01927 * 16 14 12 27 27 H 1.09006 * 109.38674 * 297.31938 * 16 14 12 28 28 H 1.09005 * 109.22702 * 190.99995 * 17 16 14 29 29 H 1.09005 * 109.22706 * 310.35177 * 17 16 14 30 30 H 1.08995 * 109.38627 * 49.47164 * 18 17 16 31 31 H 1.08994 * 109.38941 * 169.17516 * 18 17 16 32 32 H 1.08992 * 109.57369 * 182.82724 * 19 18 17 33 33 H 1.08998 * 109.57313 * 303.22138 * 19 18 17 34 34 H 1.09003 * 117.49780 * 214.97063 * 21 9 7 35 35 H 1.09001 * 117.49734 * 359.97438 * 21 9 7 36 36 H 1.08993 * 117.50254 * 252.51097 * 22 21 9 37 37 H 1.08997 * 117.49447 * 107.48630 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8906 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0843 -1.1943 -0.0238 9 6 1.2513 -2.4989 0.0351 10 6 0.7857 -3.0283 -1.3227 11 8 1.8230 -2.7999 -2.3128 12 6 1.5704 -3.2100 -3.5657 13 8 0.5173 -3.7417 -3.8265 14 6 2.5999 -3.0061 -4.6472 15 1 3.2502 -2.1723 -4.3826 16 6 1.8975 -2.7075 -5.9744 17 6 2.9325 -2.4304 -7.0606 18 6 3.6724 -3.7096 -7.4405 19 6 4.6001 -4.1352 -6.2993 20 16 3.5927 -4.5167 -4.8354 21 6 1.6663 -3.5269 1.0897 22 6 0.3499 -2.7624 1.2430 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1239 -2.5082 -1.6230 25 1 0.5850 -4.0970 -1.2467 26 1 1.2550 -1.8351 -5.8555 27 1 1.2903 -3.5655 -6.2635 28 1 2.4301 -2.0312 -7.9417 29 1 3.6499 -1.6962 -6.6939 30 1 2.9494 -4.5020 -7.6338 31 1 4.2625 -3.5328 -8.3397 32 1 5.1623 -5.0204 -6.5965 33 1 5.2893 -3.3234 -6.0669 34 1 1.6076 -4.5804 0.8160 35 1 2.4846 -3.2597 1.7584 36 1 0.3019 -1.9923 2.0128 37 1 -0.5748 -3.3130 1.0702 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783389877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:04 Heat of formation + Delta-G solvation = -90.562404 kcal Electronic energy + Delta-G solvation = -18848.170801 eV Core-core repulsion = 15909.429676 eV Total energy + Delta-G solvation = -2938.741124 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.53227 -38.76375 -37.70551 -36.95560 -34.01603 -32.96252 -29.45160 -28.23514 -27.26412 -24.80957 -22.99866 -21.96816 -21.66483 -21.23410 -18.81727 -18.53038 -18.15812 -17.32978 -16.90454 -16.56478 -15.87334 -15.67864 -15.13910 -14.91047 -14.65812 -14.44162 -14.12712 -13.84349 -13.64430 -13.47344 -12.93066 -12.87234 -12.63492 -12.45648 -12.36570 -12.14750 -12.00025 -11.83080 -11.68093 -11.54906 -11.28189 -10.90029 -10.76418 -10.48953 -10.04125 -8.82961 -8.12625 -6.23275 0.07609 1.32412 1.39668 1.42146 1.48378 1.53783 1.75911 2.42624 3.16552 3.31822 3.41431 3.61346 3.80453 3.88130 4.04196 4.08735 4.11990 4.31953 4.38856 4.42992 4.60416 4.60688 4.67690 4.82509 4.88227 4.95007 4.97674 5.05161 5.10876 5.13232 5.31728 5.33264 5.55889 5.63591 5.75350 6.33927 6.69658 6.81593 7.44667 8.96859 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.020878 B = 0.005533 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.808617 B = 5059.162771 C = 5665.629769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.022 3.978 3 Si 0.951 3.049 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.491 4.491 8 H 0.054 0.946 9 C -0.002 4.002 10 C 0.128 3.872 11 O -0.333 6.333 12 C 0.468 3.532 13 O -0.533 6.533 14 C -0.046 4.046 15 H 0.125 0.875 16 C -0.107 4.107 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.071 4.071 20 S -0.266 6.266 21 C -0.182 4.182 22 C -0.143 4.143 23 H 0.260 0.740 24 H 0.041 0.959 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.130 0.870 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.523 -5.364 -14.600 17.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.529 4.529 8 H 0.072 0.928 9 C -0.002 4.002 10 C 0.054 3.946 11 O -0.248 6.248 12 C 0.310 3.690 13 O -0.424 6.424 14 C -0.175 4.175 15 H 0.143 0.857 16 C -0.146 4.146 17 C -0.160 4.160 18 C -0.159 4.159 19 C -0.218 4.218 20 S -0.040 6.040 21 C -0.219 4.219 22 C -0.181 4.181 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.127 0.873 32 H 0.148 0.852 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.068 -6.322 -13.987 17.340 hybrid contribution -0.322 1.936 -0.157 1.969 sum 7.746 -4.385 -14.143 16.711 Atomic orbital electron populations 1.70118 1.07120 1.27097 1.50757 1.25698 0.95604 1.02061 0.94379 0.85603 0.79346 0.79776 0.77583 1.18903 1.20789 1.20494 1.20540 0.92291 0.89402 1.50664 0.92798 1.18941 1.00824 0.95080 0.85376 1.22502 0.87546 0.97314 0.87246 1.86595 1.46717 1.73333 1.18160 1.23382 0.87207 0.74498 0.83880 1.90577 1.27522 1.41245 1.83087 1.22943 0.97748 1.01463 0.95378 0.85729 1.21726 0.98908 1.03187 0.90768 1.21553 0.97589 0.98705 0.98174 1.21761 0.98593 0.97605 0.97896 1.23757 0.98688 1.07055 0.92347 1.87318 1.49919 1.23458 1.43332 1.23131 0.98351 0.96190 1.04257 1.22440 0.92913 1.01389 1.01353 0.93115 0.94070 0.92964 0.90995 0.90447 0.88476 0.90583 0.90902 0.87297 0.85190 0.88075 0.89101 0.89508 0.91092 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.55 12.80 21.45 0.27 -52.28 16 2 C 0.02 1.23 5.41 84.65 0.46 1.68 16 3 Si 0.95 43.39 29.54 68.60 2.03 45.42 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.49 -27.15 8.24 25.60 0.21 -26.94 16 8 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 9 C 0.00 -0.09 1.81 -52.93 -0.10 -0.19 16 10 C 0.13 6.31 5.53 71.98 0.40 6.71 16 11 O -0.33 -15.88 9.61 -51.41 -0.49 -16.38 16 12 C 0.47 19.50 6.98 71.24 0.50 20.00 16 13 O -0.53 -24.25 16.08 21.97 0.35 -23.90 16 14 C -0.05 -1.43 3.01 29.88 0.09 -1.34 16 15 H 0.12 3.64 8.14 -2.39 -0.02 3.63 16 16 C -0.11 -2.66 4.65 30.49 0.14 -2.52 16 17 C -0.12 -1.94 5.61 30.31 0.17 -1.77 16 18 C -0.12 -1.55 5.75 30.49 0.18 -1.38 16 19 C -0.07 -1.10 6.46 72.02 0.46 -0.64 16 20 S -0.27 -7.33 21.68 -56.49 -1.22 -8.55 16 21 C -0.18 -7.88 9.88 30.60 0.30 -7.57 16 22 C -0.14 -6.76 9.33 30.60 0.29 -6.47 16 23 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 24 H 0.04 2.22 8.13 -2.39 -0.02 2.20 16 25 H 0.05 2.40 7.94 -2.39 -0.02 2.38 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.08 2.09 7.87 -2.38 -0.02 2.07 16 28 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.08 1.12 8.08 -2.38 -0.02 1.10 16 30 H 0.07 1.07 8.06 -2.39 -0.02 1.05 16 31 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 3.47 8.08 -2.39 -0.02 3.45 16 35 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 36 H 0.07 3.56 8.14 -2.39 -0.02 3.54 16 37 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -66.33 321.26 5.07 -61.26 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 1.04 Total: 14.85 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 3.10 Total: -20.42 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.27 Total: -52.28 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -0.14 Total: -40.27 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -7.33 SS G_CDS: -1.22 Total: -8.55 kcal Total: -66.33 5.07 -61.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783389877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.306 kcal (2) G-P(sol) polarization free energy of solvation -66.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds