Wall clock time and date at job start Mon Mar 30 2020 01:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81400 * 102.99849 * 2 1 4 4 C 1.50704 * 112.85081 * 52.41398 * 3 2 1 5 5 O 1.20825 * 119.99447 * 231.79442 * 4 3 2 6 6 O 1.34225 * 119.99937 * 51.79355 * 4 3 2 7 7 C 1.45199 * 116.99964 * 174.49072 * 6 4 3 8 8 C 1.53002 * 109.47226 * 184.38329 * 7 6 4 9 9 C 1.50707 * 115.54306 * 281.96599 * 8 7 6 10 10 H 1.08002 * 119.99283 * 143.97418 * 9 8 7 11 11 C 1.37869 * 120.00480 * 323.97068 * 9 8 7 12 12 N 1.31514 * 119.99845 * 336.84339 * 11 9 8 13 13 Si 1.86801 * 120.00163 * 156.84063 * 11 9 8 14 14 H 1.48500 * 109.46938 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46941 * 120.00121 * 13 11 9 16 16 H 1.48497 * 109.47477 * 240.00088 * 13 11 9 17 17 C 1.52993 * 117.49934 * 136.26065 * 8 7 6 18 18 C 1.52996 * 117.50332 * 67.63588 * 8 7 6 19 19 C 1.53779 * 113.61439 * 183.60842 * 3 2 1 20 20 C 1.53775 * 87.08449 * 139.98162 * 19 3 2 21 21 C 1.53786 * 87.17218 * 334.52552 * 20 19 3 22 22 H 1.09002 * 109.46830 * 63.11896 * 1 2 3 23 23 H 1.08999 * 109.47142 * 183.11551 * 1 2 3 24 24 H 1.08997 * 109.47440 * 303.11992 * 1 2 3 25 25 H 1.09003 * 109.46789 * 304.37973 * 7 6 4 26 26 H 1.08997 * 109.47459 * 64.37621 * 7 6 4 27 27 H 0.97004 * 120.00044 * 185.03918 * 12 11 9 28 28 H 1.08994 * 117.50228 * 359.97438 * 17 8 7 29 29 H 1.09010 * 117.49615 * 145.02056 * 17 8 7 30 30 H 1.08996 * 117.50160 * 214.98422 * 18 8 7 31 31 H 1.09004 * 117.49809 * 359.97438 * 18 8 7 32 32 H 1.09000 * 113.61384 * 25.42945 * 19 3 2 33 33 H 1.09003 * 113.69146 * 254.54197 * 19 3 2 34 34 H 1.08999 * 113.61855 * 89.11198 * 20 19 3 35 35 H 1.09004 * 113.61792 * 219.94140 * 20 19 3 36 36 H 1.08996 * 113.61277 * 140.02093 * 21 20 19 37 37 H 1.09002 * 113.61653 * 270.92473 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.5283 2.5283 1.1005 5 8 0.8989 3.5264 0.8409 6 8 1.6097 2.0970 2.3690 7 6 1.0222 2.9435 3.3920 8 6 1.3064 2.3475 4.7722 9 6 0.4374 1.1816 5.1681 10 1 0.8535 0.3701 5.7467 11 6 -0.8885 1.1508 4.7917 12 7 -1.5175 2.2703 4.5076 13 14 -1.7916 -0.4809 4.6851 14 1 -0.8671 -1.5833 5.0527 15 1 -2.9451 -0.4702 5.6204 16 1 -2.2809 -0.6863 3.2982 17 6 1.7489 3.3072 5.8786 18 6 2.7585 2.3421 5.2541 19 6 3.7308 2.0514 -0.0887 20 6 3.3777 3.2068 -1.0401 21 6 2.0961 2.4301 -1.3850 22 1 -0.3633 0.4647 -0.9167 23 1 -0.3633 -1.0261 0.0559 24 1 -0.3634 0.5615 0.8607 25 1 1.4560 3.9416 3.3309 26 1 -0.0551 3.0055 3.2378 27 1 -2.4680 2.2570 4.3141 28 1 1.8379 4.3630 5.6231 29 1 1.4114 3.0954 6.8932 30 1 3.0853 1.4954 5.8577 31 1 3.5115 2.7627 4.5876 32 1 4.2984 1.2518 -0.5646 33 1 4.1707 2.3801 0.8529 34 1 3.1916 4.1516 -0.5295 35 1 4.0663 3.3075 -1.8791 36 1 1.2157 3.0643 -1.4887 37 1 2.2174 1.7337 -2.2148 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786429738.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:27 Heat of formation + Delta-G solvation = -35.278198 kcal Electronic energy + Delta-G solvation = -19523.603387 eV Core-core repulsion = 16587.259565 eV Total energy + Delta-G solvation = -2936.343821 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41635 -38.01698 -36.56064 -35.14875 -32.27783 -28.89008 -27.68856 -26.07828 -25.75967 -25.18937 -21.91399 -21.18342 -19.25080 -18.99078 -17.68539 -16.73410 -16.18590 -15.72707 -15.41393 -14.72868 -14.51525 -14.12978 -13.74869 -13.36884 -13.21038 -12.99126 -12.59945 -12.40542 -12.12016 -11.95350 -11.75154 -11.05729 -11.03636 -10.94565 -10.88475 -10.53927 -10.51021 -10.36716 -10.27213 -9.82318 -9.66142 -9.41314 -9.16273 -8.78769 -8.11228 -7.49804 -6.20035 -4.11869 1.62681 2.37436 2.93138 3.18350 3.21084 3.31298 3.38430 4.27057 4.31754 4.37084 4.64812 4.82609 5.01462 5.29899 5.33819 5.39006 5.56096 5.58177 5.61361 5.81042 5.88199 5.90907 5.95634 5.98342 6.16097 6.23285 6.36044 6.59841 6.64229 6.70903 6.93119 7.23635 7.31844 7.38097 7.84253 8.31074 8.37477 8.79429 9.42658 10.84720 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018171 B = 0.007856 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.505809 B = 3563.511191 C = 4380.630525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.205 6.205 3 C -0.064 4.064 4 C 0.473 3.527 5 O -0.509 6.509 6 O -0.324 6.324 7 C 0.097 3.903 8 C 0.049 3.951 9 C -0.488 4.488 10 H 0.067 0.933 11 C 0.073 3.927 12 N -0.873 5.873 13 Si 0.885 3.115 14 H -0.268 1.268 15 H -0.284 1.284 16 H -0.281 1.281 17 C -0.191 4.191 18 C -0.199 4.199 19 C -0.097 4.097 20 C -0.138 4.138 21 C -0.111 4.111 22 H 0.076 0.924 23 H 0.103 0.897 24 H 0.083 0.917 25 H 0.035 0.965 26 H 0.117 0.883 27 H 0.264 0.736 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.021 -0.779 -10.888 12.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.024 5.976 3 C -0.175 4.175 4 C 0.313 3.687 5 O -0.399 6.399 6 O -0.239 6.239 7 C 0.025 3.975 8 C 0.049 3.951 9 C -0.525 4.525 10 H 0.085 0.915 11 C -0.130 4.130 12 N -0.510 5.510 13 Si 0.712 3.288 14 H -0.192 1.192 15 H -0.210 1.210 16 H -0.207 1.207 17 C -0.229 4.229 18 C -0.237 4.237 19 C -0.135 4.135 20 C -0.177 4.177 21 C -0.150 4.150 22 H 0.095 0.905 23 H 0.121 0.879 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.135 0.865 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.295 -1.359 -11.003 13.271 hybrid contribution -1.569 0.331 0.198 1.616 sum 5.726 -1.029 -10.805 12.272 Atomic orbital electron populations 1.23451 0.94135 1.06726 1.05424 1.86503 1.07693 1.05988 1.97414 1.24030 1.01771 0.95097 0.96588 1.22486 0.78590 0.83010 0.84595 1.90613 1.39350 1.25783 1.84178 1.86523 1.71964 1.50690 1.14681 1.23134 1.01412 0.88783 0.84176 1.18820 0.91622 0.96516 0.88161 1.20467 0.94003 1.03528 1.34471 0.91522 1.24961 0.97342 0.96275 0.94464 1.69900 1.09430 1.25683 1.45984 0.86642 0.79453 0.84748 0.77982 1.19211 1.21032 1.20651 1.23004 1.05580 0.94483 0.99819 1.22814 0.93966 1.02008 1.04896 1.22756 0.90394 0.98944 1.01424 1.22886 0.97378 0.97752 0.99653 1.23247 1.00010 0.98950 0.92843 0.90502 0.87879 0.89824 0.94688 0.86513 0.92548 0.91606 0.89677 0.90191 0.91291 0.87897 0.89734 0.89499 0.90200 0.89557 0.87928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 10.42 101.05 1.05 -0.97 16 2 S -0.21 -3.28 21.75 -107.50 -2.34 -5.62 16 3 C -0.06 -1.01 1.26 -90.82 -0.11 -1.12 16 4 C 0.47 9.62 5.87 36.01 0.21 9.83 16 5 O -0.51 -11.29 15.61 -18.75 -0.29 -11.58 16 6 O -0.32 -7.48 10.12 -39.24 -0.40 -7.88 16 7 C 0.10 2.41 5.11 37.16 0.19 2.60 16 8 C 0.05 1.24 1.97 -155.66 -0.31 0.93 16 9 C -0.49 -13.32 8.96 -34.44 -0.31 -13.63 16 10 H 0.07 1.82 7.92 -52.49 -0.42 1.40 16 11 C 0.07 1.98 5.02 -17.82 -0.09 1.89 16 12 N -0.87 -24.32 11.22 55.43 0.62 -23.70 16 13 Si 0.88 20.87 29.60 -169.99 -5.03 15.84 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 C -0.19 -4.32 9.88 -26.74 -0.26 -4.59 16 18 C -0.20 -4.37 9.95 -26.74 -0.27 -4.63 16 19 C -0.10 -1.24 7.25 -25.92 -0.19 -1.43 16 20 C -0.14 -1.59 7.76 -25.92 -0.20 -1.79 16 21 C -0.11 -1.42 7.07 -25.77 -0.18 -1.60 16 22 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 23 H 0.10 1.43 8.14 -51.92 -0.42 1.01 16 24 H 0.08 1.59 7.66 -51.93 -0.40 1.19 16 25 H 0.03 0.83 7.94 -51.93 -0.41 0.41 16 26 H 0.12 3.22 5.53 -51.93 -0.29 2.93 16 27 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 28 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 29 H 0.08 1.92 8.14 -51.92 -0.42 1.50 16 30 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 33 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.21 7.42 -51.93 -0.39 0.83 16 37 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 324.32 15.07 4.89 4.89 Total: -1.00 -29.26 324.32 -8.69 -37.95 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.67 Total: 4.59 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -0.47 Total: -14.50 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.62 Total: -23.70 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.69 Total: -19.46 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Atomic # 16 Polarization: -3.28 SS G_CDS: -2.34 Total: -5.62 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.26 -8.69 -37.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786429738.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.676 kcal (2) G-P(sol) polarization free energy of solvation -29.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds