Wall clock time and date at job start Mon Mar 30 2020 01:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00066 * 2 1 4 4 H 1.48496 * 109.47546 * 269.99896 * 3 2 1 5 5 H 1.48504 * 109.47254 * 30.00174 * 3 2 1 6 6 H 1.48503 * 109.46945 * 149.99662 * 3 2 1 7 7 C 1.37878 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00028 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.46918 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99758 * 180.02562 * 10 9 7 12 12 O 1.21711 * 119.99804 * 0.02562 * 11 10 9 13 13 C 1.46280 * 119.99705 * 179.97438 * 11 10 9 14 14 C 1.34937 * 119.99736 * 180.02562 * 13 11 10 15 15 C 1.47067 * 120.00221 * 180.02562 * 14 13 11 16 16 C 1.40422 * 119.99814 * 359.97438 * 15 14 13 17 17 C 1.36272 * 120.64206 * 180.02562 * 16 15 14 18 18 C 1.39396 * 120.27610 * 0.03846 * 17 16 15 19 19 N 1.37459 * 133.21515 * 179.97438 * 18 17 16 20 20 H 0.97004 * 125.00861 * 359.94970 * 19 18 17 21 21 C 1.36855 * 109.97644 * 179.97438 * 19 18 17 22 22 C 1.34188 * 109.96354 * 0.22656 * 21 19 18 23 23 C 1.40881 * 119.68604 * 359.96072 * 18 17 16 24 24 C 1.39257 * 120.02591 * 0.02562 * 23 18 17 25 25 H 0.97006 * 119.99783 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46924 * 60.00340 * 9 7 2 27 27 H 1.08997 * 109.47111 * 300.00429 * 9 7 2 28 28 H 0.96996 * 120.00569 * 0.02562 * 10 9 7 29 29 H 1.08003 * 120.00518 * 0.02562 * 13 11 10 30 30 H 1.08002 * 120.00276 * 0.02562 * 14 13 11 31 31 H 1.08005 * 119.67797 * 0.04445 * 16 15 14 32 32 H 1.08004 * 119.85881 * 180.02562 * 17 16 15 33 33 H 1.08002 * 125.01534 * 179.97438 * 21 19 18 34 34 H 1.08002 * 126.53707 * 179.74912 * 22 21 19 35 35 H 1.07995 * 120.31415 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5570 -5.1057 -0.0020 13 6 2.7042 -5.9952 -0.0016 14 6 2.2544 -7.2674 -0.0027 15 6 3.2100 -8.3853 -0.0027 16 6 4.5906 -8.1288 -0.0021 17 6 5.4877 -9.1546 -0.0026 18 6 5.0441 -10.4761 -0.0045 19 7 5.6943 -11.6872 -0.0059 20 1 6.6575 -11.8017 -0.0064 21 6 4.7822 -12.7075 -0.0070 22 6 3.5365 -12.2085 -0.0113 23 6 3.6618 -10.7481 -0.0051 24 6 2.7453 -9.6996 -0.0043 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 3.1566 -3.4355 -0.0002 29 1 3.7661 -5.7980 -0.0012 30 1 1.1926 -7.4648 -0.0035 31 1 4.9449 -7.1085 -0.0010 32 1 6.5467 -8.9428 -0.0018 33 1 5.0287 -13.7590 -0.0085 34 1 2.6170 -12.7750 -0.0169 35 1 1.6846 -9.9027 -0.0042 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787627453.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:04 Heat of formation + Delta-G solvation = 29.147088 kcal Electronic energy + Delta-G solvation = -18298.802155 eV Core-core repulsion = 15262.100823 eV Total energy + Delta-G solvation = -3036.701331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.40255 -38.78484 -37.44132 -34.17142 -33.00643 -32.28262 -32.16140 -29.22446 -28.74266 -27.13927 -24.03100 -22.82884 -22.28061 -21.11005 -20.23183 -19.02072 -18.25564 -17.27342 -16.21686 -15.99220 -15.15067 -14.79493 -14.71571 -14.51472 -14.14792 -14.07284 -13.88665 -13.39691 -12.88976 -12.84755 -12.21867 -12.02928 -11.97451 -11.74593 -11.68548 -10.94977 -10.88360 -10.86608 -10.28415 -10.08453 -9.64425 -9.36078 -9.07697 -8.69880 -8.19674 -7.88749 -7.61606 -6.13293 -4.19975 0.71848 1.05866 2.25239 2.48901 2.85520 3.26608 3.32480 3.35080 3.76457 4.14233 4.16283 4.38616 4.50434 4.57770 4.84459 4.94390 5.10068 5.22716 5.23009 5.30111 5.36471 5.60278 5.68765 5.83001 5.89767 6.16524 6.21258 6.45737 6.50323 6.62083 6.77181 6.94058 7.22520 7.37397 7.49804 7.56732 7.72075 8.01036 8.69203 8.82643 9.17128 9.46620 10.97001 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.051563 B = 0.002659 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.896612 B =10527.779203 C =11055.529855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.706 5.706 11 C 0.527 3.473 12 O -0.562 6.562 13 C -0.196 4.196 14 C -0.039 4.039 15 C -0.090 4.090 16 C -0.080 4.080 17 C -0.132 4.132 18 C 0.099 3.901 19 N -0.596 5.596 20 H 0.414 0.586 21 C 0.043 3.957 22 C -0.199 4.199 23 C -0.115 4.115 24 C -0.048 4.048 25 H 0.266 0.734 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.391 0.609 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.121 0.879 33 H 0.169 0.831 34 H 0.147 0.853 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.477 -24.275 -0.014 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.127 3.873 10 N -0.353 5.353 11 C 0.314 3.686 12 O -0.444 6.444 13 C -0.217 4.217 14 C -0.059 4.059 15 C -0.091 4.091 16 C -0.099 4.099 17 C -0.153 4.153 18 C -0.009 4.009 19 N -0.199 5.199 20 H 0.251 0.749 21 C -0.082 4.082 22 C -0.224 4.224 23 C -0.119 4.119 24 C -0.067 4.067 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.224 0.776 29 H 0.141 0.859 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.139 0.861 33 H 0.187 0.813 34 H 0.165 0.835 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.569 -24.300 -0.009 27.358 hybrid contribution 1.422 0.937 -0.007 1.703 sum 13.991 -23.363 -0.016 27.232 Atomic orbital electron populations 1.69983 1.06099 1.27253 1.48975 1.24962 0.94926 0.99456 0.94755 0.86408 0.79605 0.82652 0.78193 1.20475 1.21021 1.19766 1.21237 0.93270 0.90481 1.53097 0.91889 1.19120 0.88376 0.81977 0.97807 1.46388 1.11103 1.06188 1.71649 1.18290 0.88453 0.83753 0.78100 1.90762 1.16646 1.85210 1.51771 1.23135 0.99674 0.93478 1.05444 1.22206 0.99158 0.91041 0.93461 1.18810 0.92918 0.92679 1.04703 1.20844 0.92012 0.98895 0.98185 1.19668 0.99777 0.88897 1.06960 1.18408 0.91988 0.86942 1.03555 1.41769 1.08705 1.04167 1.65288 0.74907 1.21799 0.88830 0.93132 1.04466 1.21749 0.97098 0.91924 1.11678 1.19148 0.92038 0.93618 1.07106 1.20796 0.98957 0.90162 0.96736 0.92471 0.95434 0.95438 0.77629 0.85905 0.84856 0.84984 0.86123 0.81341 0.83512 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.98 9.28 -34.44 -0.32 -15.30 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.76 5.43 -5.19 -0.03 6.73 16 10 N -0.71 -15.51 5.54 -62.93 -0.35 -15.85 16 11 C 0.53 11.14 7.74 -13.03 -0.10 11.04 16 12 O -0.56 -14.15 16.23 5.18 0.08 -14.07 16 13 C -0.20 -3.09 9.40 -37.52 -0.35 -3.44 16 14 C -0.04 -0.56 9.45 -37.18 -0.35 -0.91 16 15 C -0.09 -1.13 5.87 -105.06 -0.62 -1.75 16 16 C -0.08 -0.89 9.33 -39.47 -0.37 -1.26 16 17 C -0.13 -1.31 10.00 -39.86 -0.40 -1.71 16 18 C 0.10 1.01 7.27 -83.91 -0.61 0.40 16 19 N -0.60 -4.31 6.05 -10.59 -0.06 -4.38 16 20 H 0.41 1.70 8.96 -40.82 -0.37 1.33 16 21 C 0.04 0.29 11.81 -16.74 -0.20 0.09 16 22 C -0.20 -1.76 11.09 -37.65 -0.42 -2.18 16 23 C -0.11 -1.29 6.36 -105.15 -0.67 -1.96 16 24 C -0.05 -0.57 9.85 -38.77 -0.38 -0.95 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.39 7.29 8.30 -40.82 -0.34 6.96 16 29 H 0.12 1.54 6.05 -52.48 -0.32 1.22 16 30 H 0.13 2.04 7.52 -52.49 -0.39 1.64 16 31 H 0.13 1.27 6.13 -52.48 -0.32 0.95 16 32 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 33 H 0.17 0.51 8.06 -52.49 -0.42 0.08 16 34 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 311.68 15.07 4.70 4.70 Total: -1.00 -34.86 311.68 -8.63 -43.50 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -3.81 Total: 5.29 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -4.91 Total: -9.53 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.32 Total: -45.95 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.08 Total: -14.07 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.86 -8.63 -43.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787627453.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.646 kcal (2) G-P(sol) polarization free energy of solvation -34.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds