Wall clock time and date at job start Mon Mar 30 2020 01:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00066 * 2 1 4 4 H 1.48496 * 109.47546 * 269.99896 * 3 2 1 5 5 H 1.48504 * 109.47254 * 30.00174 * 3 2 1 6 6 H 1.48503 * 109.46945 * 149.99662 * 3 2 1 7 7 C 1.37878 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00028 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.46918 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99758 * 180.02562 * 10 9 7 12 12 O 1.21711 * 119.99804 * 0.02562 * 11 10 9 13 13 C 1.46280 * 119.99705 * 179.97438 * 11 10 9 14 14 C 1.34937 * 119.99736 * 180.02562 * 13 11 10 15 15 C 1.47067 * 120.00221 * 180.02562 * 14 13 11 16 16 C 1.40422 * 119.99814 * 359.97438 * 15 14 13 17 17 C 1.36272 * 120.64206 * 180.02562 * 16 15 14 18 18 C 1.39396 * 120.27610 * 0.03846 * 17 16 15 19 19 N 1.37459 * 133.21515 * 179.97438 * 18 17 16 20 20 H 0.97004 * 125.00861 * 359.94970 * 19 18 17 21 21 C 1.36855 * 109.97644 * 179.97438 * 19 18 17 22 22 C 1.34188 * 109.96354 * 0.22656 * 21 19 18 23 23 C 1.40881 * 119.68604 * 359.96072 * 18 17 16 24 24 C 1.39257 * 120.02591 * 0.02562 * 23 18 17 25 25 H 0.97006 * 119.99783 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46924 * 60.00340 * 9 7 2 27 27 H 1.08997 * 109.47111 * 300.00429 * 9 7 2 28 28 H 0.96996 * 120.00569 * 0.02562 * 10 9 7 29 29 H 1.08003 * 120.00518 * 0.02562 * 13 11 10 30 30 H 1.08002 * 120.00276 * 0.02562 * 14 13 11 31 31 H 1.08005 * 119.67797 * 0.04445 * 16 15 14 32 32 H 1.08004 * 119.85881 * 180.02562 * 17 16 15 33 33 H 1.08002 * 125.01534 * 179.97438 * 21 19 18 34 34 H 1.08002 * 126.53707 * 179.74912 * 22 21 19 35 35 H 1.07995 * 120.31415 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5570 -5.1057 -0.0020 13 6 2.7042 -5.9952 -0.0016 14 6 2.2544 -7.2674 -0.0027 15 6 3.2100 -8.3853 -0.0027 16 6 4.5906 -8.1288 -0.0021 17 6 5.4877 -9.1546 -0.0026 18 6 5.0441 -10.4761 -0.0045 19 7 5.6943 -11.6872 -0.0059 20 1 6.6575 -11.8017 -0.0064 21 6 4.7822 -12.7075 -0.0070 22 6 3.5365 -12.2085 -0.0113 23 6 3.6618 -10.7481 -0.0051 24 6 2.7453 -9.6996 -0.0043 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 3.1566 -3.4355 -0.0002 29 1 3.7661 -5.7980 -0.0012 30 1 1.1926 -7.4648 -0.0035 31 1 4.9449 -7.1085 -0.0010 32 1 6.5467 -8.9428 -0.0018 33 1 5.0287 -13.7590 -0.0085 34 1 2.6170 -12.7750 -0.0169 35 1 1.6846 -9.9027 -0.0042 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787627453.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:04 Heat of formation + Delta-G solvation = 5.272204 kcal Electronic energy + Delta-G solvation = -18299.837447 eV Core-core repulsion = 15262.100823 eV Total energy + Delta-G solvation = -3037.736624 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.09165 -40.49302 -38.34570 -36.16158 -34.36984 -34.09058 -32.93485 -30.25896 -29.69134 -28.88333 -25.58073 -23.92857 -23.56438 -22.00469 -21.47678 -20.36255 -19.08770 -18.78493 -17.79424 -17.20246 -16.75015 -16.19127 -16.03656 -15.87384 -15.38850 -15.14607 -14.73093 -14.56903 -14.05514 -14.00417 -13.97490 -13.54503 -13.07320 -13.01342 -12.86571 -12.75721 -12.70462 -12.21840 -11.71919 -11.48543 -10.93537 -10.87577 -10.80056 -10.61301 -9.83573 -8.93172 -8.53274 -8.28573 -6.45484 -0.32963 0.29658 1.14725 1.43613 1.46699 1.57902 1.85783 2.28668 2.34174 2.42428 2.65498 3.02896 3.06378 3.70085 3.79051 3.99372 4.15692 4.24279 4.35768 4.41192 4.49539 4.69996 4.85553 5.03519 5.06860 5.10727 5.21512 5.23514 5.32317 5.48538 5.53081 5.71306 5.73730 5.77450 5.80534 5.85108 6.17809 6.65227 6.73594 6.93099 7.23516 7.49598 8.83925 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.051563 B = 0.002659 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.896612 B =10527.779203 C =11055.529855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.988 3.012 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.264 3.736 10 N -0.701 5.701 11 C 0.524 3.476 12 O -0.614 6.614 13 C -0.214 4.214 14 C -0.010 4.010 15 C -0.114 4.114 16 C -0.089 4.089 17 C -0.129 4.129 18 C 0.090 3.910 19 N -0.585 5.585 20 H 0.432 0.568 21 C 0.065 3.935 22 C -0.230 4.230 23 C -0.141 4.141 24 C -0.056 4.056 25 H 0.269 0.731 26 H -0.013 1.013 27 H -0.012 1.012 28 H 0.410 0.590 29 H 0.162 0.838 30 H 0.117 0.883 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.212 0.788 34 H 0.158 0.842 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.332 -25.785 -0.009 31.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.811 3.189 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.141 3.859 10 N -0.350 5.350 11 C 0.315 3.685 12 O -0.499 6.499 13 C -0.234 4.234 14 C -0.030 4.030 15 C -0.115 4.115 16 C -0.108 4.108 17 C -0.150 4.150 18 C -0.019 4.019 19 N -0.189 5.189 20 H 0.271 0.729 21 C -0.062 4.062 22 C -0.254 4.254 23 C -0.146 4.146 24 C -0.074 4.074 25 H 0.078 0.922 26 H 0.005 0.995 27 H 0.005 0.995 28 H 0.246 0.754 29 H 0.179 0.821 30 H 0.135 0.865 31 H 0.165 0.835 32 H 0.167 0.833 33 H 0.229 0.771 34 H 0.176 0.824 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 16.498 -25.849 -0.005 30.665 hybrid contribution 0.224 1.083 -0.010 1.106 sum 16.722 -24.766 -0.015 29.883 Atomic orbital electron populations 1.70152 1.08335 1.28591 1.49957 1.26120 0.95829 1.04049 0.93821 0.85109 0.78457 0.76721 0.78629 1.19528 1.20920 1.17831 1.21623 0.94356 0.90477 1.52931 0.89682 1.18575 0.88778 0.84407 0.94103 1.46098 1.11256 1.05455 1.72175 1.19145 0.88682 0.84484 0.76202 1.90727 1.19278 1.85882 1.54017 1.22859 1.00065 0.91412 1.09107 1.22290 0.99011 0.91620 0.90109 1.18722 0.93398 0.91990 1.07386 1.21025 0.91305 1.00158 0.98297 1.19961 1.01030 0.88435 1.05540 1.18640 0.92023 0.88121 1.03156 1.41877 1.09831 1.03279 1.63887 0.72873 1.22470 0.87856 0.94698 1.01128 1.22051 0.98850 0.90960 1.13531 1.19510 0.92689 0.94800 1.07622 1.20951 0.99557 0.90435 0.96499 0.92228 0.99457 0.99454 0.75410 0.82111 0.86530 0.83530 0.83265 0.77114 0.82414 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.99 43.02 29.54 68.60 2.03 45.05 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.56 -31.11 9.28 25.60 0.24 -30.88 16 8 H 0.09 4.28 7.60 -2.91 -0.02 4.26 16 9 C 0.26 15.18 5.43 85.64 0.46 15.65 16 10 N -0.70 -31.77 5.54 -471.21 -2.61 -34.38 16 11 C 0.52 23.11 7.74 86.33 0.67 23.78 16 12 O -0.61 -32.97 16.23 -4.38 -0.07 -33.04 16 13 C -0.21 -6.74 9.40 23.60 0.22 -6.52 16 14 C -0.01 -0.30 9.45 23.83 0.23 -0.08 16 15 C -0.11 -2.81 5.87 -20.15 -0.12 -2.93 16 16 C -0.09 -1.80 9.33 22.34 0.21 -1.60 16 17 C -0.13 -2.20 10.00 22.09 0.22 -1.98 16 18 C 0.09 1.60 7.27 39.19 0.28 1.89 16 19 N -0.58 -6.29 6.05 -187.42 -1.13 -7.42 16 20 H 0.43 1.70 8.96 -92.71 -0.83 0.87 16 21 C 0.06 0.62 11.81 82.98 0.98 1.60 16 22 C -0.23 -3.56 11.09 23.52 0.26 -3.30 16 23 C -0.14 -2.99 6.36 -20.21 -0.13 -3.12 16 24 C -0.06 -1.32 9.85 22.80 0.22 -1.09 16 25 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 26 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 27 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 28 H 0.41 15.18 8.30 -92.71 -0.77 14.41 16 29 H 0.16 3.74 6.05 -2.91 -0.02 3.72 16 30 H 0.12 3.80 7.52 -2.91 -0.02 3.78 16 31 H 0.15 2.43 6.13 -2.91 -0.02 2.41 16 32 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.21 0.15 8.06 -2.91 -0.02 0.12 16 34 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 35 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -80.08 311.68 2.24 -77.83 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -0.46 Total: 17.17 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 4.21 Total: -8.04 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -3.46 Total: -98.97 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.07 Total: -33.04 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -80.08 2.24 -77.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787627453.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.106 kcal (2) G-P(sol) polarization free energy of solvation -80.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds