Wall clock time and date at job start Mon Mar 30 2020 01:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00219 * 2 1 4 4 H 1.48500 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47174 * 300.00069 * 3 2 1 6 6 H 1.48496 * 109.47018 * 60.00074 * 3 2 1 7 7 C 1.37882 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00454 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99590 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47300 * 180.02562 * 9 7 2 11 11 C 1.34769 * 120.00466 * 180.02562 * 10 9 7 12 12 O 1.21722 * 120.00080 * 0.02562 * 11 10 9 13 13 C 1.46280 * 120.00201 * 179.97438 * 11 10 9 14 14 C 1.34939 * 120.00037 * 187.30797 * 13 11 10 15 15 C 1.47060 * 120.00100 * 10.25076 * 14 13 11 16 16 C 1.40429 * 120.00108 * 223.77369 * 15 14 13 17 17 C 1.36269 * 120.64777 * 180.02562 * 16 15 14 18 18 C 1.39409 * 120.27143 * 359.97438 * 17 16 15 19 19 N 1.37454 * 133.21219 * 179.97438 * 18 17 16 20 20 H 0.97003 * 125.01741 * 0.02860 * 19 18 17 21 21 C 1.36858 * 109.97491 * 180.02562 * 19 18 17 22 22 C 1.34195 * 109.96397 * 0.26593 * 21 19 18 23 23 C 1.40879 * 119.68458 * 0.02562 * 18 17 16 24 24 C 1.39257 * 120.02932 * 359.97438 * 23 18 17 25 25 H 0.96995 * 119.99641 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47112 * 60.00267 * 9 7 2 27 27 H 1.09005 * 109.47436 * 300.00368 * 9 7 2 28 28 H 0.97007 * 119.99683 * 359.97438 * 10 9 7 29 29 H 1.08005 * 120.00405 * 7.30846 * 13 11 10 30 30 H 1.08003 * 119.99883 * 190.24720 * 14 13 11 31 31 H 1.08005 * 119.67857 * 0.02562 * 16 15 14 32 32 H 1.07995 * 119.86748 * 180.02562 * 17 16 15 33 33 H 1.08003 * 125.02114 * 180.02562 * 21 19 18 34 34 H 1.08007 * 126.53964 * 179.69814 * 22 21 19 35 35 H 1.07999 * 120.31425 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5571 -5.1058 -0.0020 13 6 2.7043 -5.9952 -0.0016 14 6 2.2617 -7.2612 -0.1508 15 6 0.8648 -7.5111 -0.5363 16 6 0.1261 -8.5141 0.1121 17 6 -1.1690 -8.7572 -0.2349 18 6 -1.7790 -8.0100 -1.2414 19 7 -3.0373 -8.0261 -1.7944 20 1 -3.7533 -8.6255 -1.5314 21 6 -3.1312 -7.0718 -2.7709 22 6 -1.9637 -6.4207 -2.8889 23 6 -1.0498 -7.0006 -1.9003 24 6 0.2737 -6.7524 -1.5454 25 1 -0.4849 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8897 28 1 3.1567 -3.4355 -0.0009 29 1 3.7605 -5.8029 0.1174 30 1 2.9335 -8.0909 0.0129 31 1 0.5890 -9.0986 0.8935 32 1 -1.7255 -9.5314 0.2724 33 1 -4.0132 -6.8746 -3.3621 34 1 -1.7404 -5.6209 -3.5795 35 1 0.8371 -5.9801 -2.0478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787627461.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:06 Heat of formation + Delta-G solvation = 45.117289 kcal Electronic energy + Delta-G solvation = -19429.809207 eV Core-core repulsion = 16393.800395 eV Total energy + Delta-G solvation = -3036.008812 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90523 -38.96648 -36.71538 -34.12454 -32.79387 -32.26323 -31.53910 -28.62755 -28.47662 -27.04853 -23.92653 -22.60532 -21.60881 -20.75644 -20.31678 -18.91805 -17.85003 -16.97236 -16.03311 -15.61668 -15.22280 -14.53258 -14.35614 -14.15070 -14.00404 -13.70131 -13.41656 -13.05461 -12.78346 -12.48838 -12.36944 -11.90744 -11.71716 -11.47942 -11.18993 -10.89681 -10.88247 -10.58156 -10.26826 -9.61861 -9.32474 -9.14878 -8.83117 -8.67539 -7.86284 -7.63853 -7.07638 -6.12797 -4.19297 1.19599 1.59226 2.36837 2.99662 3.25769 3.32792 3.33204 3.36054 4.10274 4.24934 4.31043 4.49081 4.95591 5.02934 5.14641 5.23350 5.32411 5.46864 5.60513 5.70616 5.75970 5.91212 6.05133 6.25476 6.32227 6.44891 6.54920 6.79370 6.92628 7.05016 7.08612 7.40111 7.46302 7.54340 7.58702 7.72122 7.74467 8.02367 8.72966 8.85610 9.23546 9.47942 10.97452 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.022372 B = 0.004477 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.255909 B = 6251.989194 C = 7215.774116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.707 5.707 11 C 0.518 3.482 12 O -0.540 6.540 13 C -0.208 4.208 14 C -0.033 4.033 15 C -0.108 4.108 16 C -0.071 4.071 17 C -0.157 4.157 18 C 0.108 3.892 19 N -0.601 5.601 20 H 0.410 0.590 21 C 0.032 3.968 22 C -0.188 4.188 23 C -0.120 4.120 24 C 0.034 3.966 25 H 0.264 0.736 26 H 0.027 0.973 27 H 0.026 0.974 28 H 0.389 0.611 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.166 0.834 34 H 0.144 0.856 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.464 -17.539 -3.563 17.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.354 5.354 11 C 0.305 3.695 12 O -0.421 6.421 13 C -0.229 4.229 14 C -0.053 4.053 15 C -0.110 4.110 16 C -0.090 4.090 17 C -0.178 4.178 18 C 0.000 4.000 19 N -0.204 5.204 20 H 0.246 0.754 21 C -0.093 4.093 22 C -0.213 4.213 23 C -0.125 4.125 24 C 0.015 3.985 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.222 0.778 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.183 0.817 34 H 0.162 0.838 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.607 -17.551 -3.563 17.981 hybrid contribution 0.511 1.006 0.284 1.164 sum -1.097 -16.544 -3.279 16.902 Atomic orbital electron populations 1.69992 1.06102 1.27085 1.49145 1.24951 0.94887 0.99417 0.94770 0.86380 0.79867 0.83063 0.77713 1.19629 1.20821 1.20838 1.21290 0.93290 0.90546 1.52885 0.91893 1.19076 0.88330 0.82001 0.97674 1.46486 1.10976 1.06351 1.71577 1.18430 0.88879 0.83695 0.78492 1.90864 1.16266 1.84280 1.50693 1.23182 0.99523 0.93776 1.06416 1.22160 0.93885 0.95930 0.93338 1.18459 0.94212 0.98999 0.99290 1.20458 0.93370 0.96711 0.98477 1.19419 0.95804 1.02751 0.99779 1.18339 0.85332 0.98880 0.97417 1.41674 1.11559 1.33610 1.33586 0.75390 1.21675 0.99808 0.93191 0.94613 1.21768 0.92997 1.03691 1.02838 1.19060 0.94620 0.98964 0.99831 1.20533 0.92115 0.92475 0.93348 0.92575 0.95514 0.95622 0.77828 0.85662 0.85545 0.86253 0.86971 0.81680 0.83801 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.25 6.77 5.43 -5.19 -0.03 6.74 16 10 N -0.71 -15.34 5.54 -62.93 -0.35 -15.68 16 11 C 0.52 10.68 6.76 -13.03 -0.09 10.59 16 12 O -0.54 -13.03 12.10 5.17 0.06 -12.97 16 13 C -0.21 -3.18 9.91 -37.52 -0.37 -3.55 16 14 C -0.03 -0.46 9.80 -37.18 -0.36 -0.83 16 15 C -0.11 -1.76 4.56 -105.06 -0.48 -2.24 16 16 C -0.07 -1.03 9.70 -39.47 -0.38 -1.41 16 17 C -0.16 -2.23 10.00 -39.85 -0.40 -2.63 16 18 C 0.11 1.68 7.27 -83.91 -0.61 1.07 16 19 N -0.60 -7.45 6.05 -10.59 -0.06 -7.51 16 20 H 0.41 3.56 8.96 -40.82 -0.37 3.19 16 21 C 0.03 0.40 11.81 -16.73 -0.20 0.20 16 22 C -0.19 -2.94 11.09 -37.64 -0.42 -3.36 16 23 C -0.12 -2.14 6.36 -105.15 -0.67 -2.81 16 24 C 0.03 0.62 6.62 -38.77 -0.26 0.37 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.39 7.27 8.30 -40.82 -0.34 6.93 16 29 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 30 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 31 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 32 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.17 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.14 2.09 8.06 -52.48 -0.42 1.67 16 35 H 0.12 2.21 6.98 -52.49 -0.37 1.84 16 LS Contribution 306.68 15.07 4.62 4.62 Total: -1.00 -34.70 306.68 -8.68 -43.38 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -3.99 Total: 9.28 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -4.68 Total: -11.44 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.32 Total: -48.96 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.06 Total: -12.97 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.70 -8.68 -43.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787627461.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.496 kcal (2) G-P(sol) polarization free energy of solvation -34.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds