Wall clock time and date at job start Mon Mar 30 2020 01:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00219 * 2 1 4 4 H 1.48500 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47174 * 300.00069 * 3 2 1 6 6 H 1.48496 * 109.47018 * 60.00074 * 3 2 1 7 7 C 1.37882 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00454 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99590 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47300 * 180.02562 * 9 7 2 11 11 C 1.34769 * 120.00466 * 180.02562 * 10 9 7 12 12 O 1.21722 * 120.00080 * 0.02562 * 11 10 9 13 13 C 1.46280 * 120.00201 * 179.97438 * 11 10 9 14 14 C 1.34939 * 120.00037 * 187.30797 * 13 11 10 15 15 C 1.47060 * 120.00100 * 10.25076 * 14 13 11 16 16 C 1.40429 * 120.00108 * 223.77369 * 15 14 13 17 17 C 1.36269 * 120.64777 * 180.02562 * 16 15 14 18 18 C 1.39409 * 120.27143 * 359.97438 * 17 16 15 19 19 N 1.37454 * 133.21219 * 179.97438 * 18 17 16 20 20 H 0.97003 * 125.01741 * 0.02860 * 19 18 17 21 21 C 1.36858 * 109.97491 * 180.02562 * 19 18 17 22 22 C 1.34195 * 109.96397 * 0.26593 * 21 19 18 23 23 C 1.40879 * 119.68458 * 0.02562 * 18 17 16 24 24 C 1.39257 * 120.02932 * 359.97438 * 23 18 17 25 25 H 0.96995 * 119.99641 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47112 * 60.00267 * 9 7 2 27 27 H 1.09005 * 109.47436 * 300.00368 * 9 7 2 28 28 H 0.97007 * 119.99683 * 359.97438 * 10 9 7 29 29 H 1.08005 * 120.00405 * 7.30846 * 13 11 10 30 30 H 1.08003 * 119.99883 * 190.24720 * 14 13 11 31 31 H 1.08005 * 119.67857 * 0.02562 * 16 15 14 32 32 H 1.07995 * 119.86748 * 180.02562 * 17 16 15 33 33 H 1.08003 * 125.02114 * 180.02562 * 21 19 18 34 34 H 1.08007 * 126.53964 * 179.69814 * 22 21 19 35 35 H 1.07999 * 120.31425 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5571 -5.1058 -0.0020 13 6 2.7043 -5.9952 -0.0016 14 6 2.2617 -7.2612 -0.1508 15 6 0.8648 -7.5111 -0.5363 16 6 0.1261 -8.5141 0.1121 17 6 -1.1690 -8.7572 -0.2349 18 6 -1.7790 -8.0100 -1.2414 19 7 -3.0373 -8.0261 -1.7944 20 1 -3.7533 -8.6255 -1.5314 21 6 -3.1312 -7.0718 -2.7709 22 6 -1.9637 -6.4207 -2.8889 23 6 -1.0498 -7.0006 -1.9003 24 6 0.2737 -6.7524 -1.5454 25 1 -0.4849 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8897 28 1 3.1567 -3.4355 -0.0009 29 1 3.7605 -5.8029 0.1174 30 1 2.9335 -8.0909 0.0129 31 1 0.5890 -9.0986 0.8935 32 1 -1.7255 -9.5314 0.2724 33 1 -4.0132 -6.8746 -3.3621 34 1 -1.7404 -5.6209 -3.5795 35 1 0.8371 -5.9801 -2.0478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787627461.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:06 Heat of formation + Delta-G solvation = 20.799640 kcal Electronic energy + Delta-G solvation = -19430.863699 eV Core-core repulsion = 16393.800395 eV Total energy + Delta-G solvation = -3037.063304 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.03345 -40.56140 -37.97564 -36.05551 -34.31294 -34.03950 -32.70676 -30.09030 -29.64515 -28.84469 -25.56716 -24.17457 -22.92258 -22.15124 -21.55482 -20.49061 -18.98171 -18.65973 -17.67191 -17.04715 -16.86613 -16.17997 -16.00768 -15.41138 -15.21757 -15.16226 -14.72947 -14.38360 -14.18386 -13.92087 -13.87596 -13.69070 -13.42195 -12.90201 -12.76096 -12.62248 -12.35366 -12.20711 -11.75424 -11.45587 -10.87224 -10.80081 -10.51546 -10.24537 -9.70672 -8.87943 -8.31225 -8.28213 -6.46624 -0.05533 0.45651 1.13556 1.41842 1.43524 1.57158 1.86551 2.33038 2.34153 2.55520 2.77647 3.05131 3.09282 3.84442 3.96025 4.07630 4.19586 4.31012 4.47302 4.56330 4.62562 4.81800 4.92702 5.06710 5.10907 5.16667 5.24537 5.30567 5.39496 5.51901 5.62687 5.75390 5.77676 5.86143 5.86756 5.92602 6.31014 6.65630 6.80578 7.02785 7.23575 7.61691 8.82966 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.022372 B = 0.004477 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.255909 B = 6251.989194 C = 7215.774116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.271 3.729 10 N -0.707 5.707 11 C 0.511 3.489 12 O -0.582 6.582 13 C -0.223 4.223 14 C -0.007 4.007 15 C -0.124 4.124 16 C -0.079 4.079 17 C -0.153 4.153 18 C 0.089 3.911 19 N -0.586 5.586 20 H 0.431 0.569 21 C 0.063 3.937 22 C -0.245 4.245 23 C -0.158 4.158 24 C -0.002 4.002 25 H 0.268 0.732 26 H -0.017 1.017 27 H -0.018 1.018 28 H 0.406 0.594 29 H 0.167 0.833 30 H 0.181 0.819 31 H 0.157 0.843 32 H 0.148 0.852 33 H 0.212 0.788 34 H 0.137 0.863 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 -19.199 -2.796 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.593 4.593 8 H 0.101 0.899 9 C 0.148 3.852 10 N -0.356 5.356 11 C 0.301 3.699 12 O -0.465 6.465 13 C -0.244 4.244 14 C -0.026 4.026 15 C -0.126 4.126 16 C -0.098 4.098 17 C -0.173 4.173 18 C -0.019 4.019 19 N -0.191 5.191 20 H 0.271 0.729 21 C -0.063 4.063 22 C -0.270 4.270 23 C -0.162 4.162 24 C -0.021 4.021 25 H 0.077 0.923 26 H 0.001 0.999 27 H 0.000 1.000 28 H 0.241 0.759 29 H 0.185 0.815 30 H 0.198 0.802 31 H 0.174 0.826 32 H 0.166 0.834 33 H 0.228 0.772 34 H 0.154 0.846 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.372 -19.266 -2.788 19.470 hybrid contribution -0.021 1.383 0.000 1.383 sum -0.393 -17.883 -2.788 18.104 Atomic orbital electron populations 1.70161 1.08371 1.28459 1.50136 1.26100 0.95771 1.03998 0.93797 0.85090 0.79093 0.77168 0.77730 1.17570 1.20366 1.20350 1.21673 0.94284 0.90661 1.52726 0.89872 1.18438 0.88645 0.84523 0.93574 1.46223 1.10915 1.05777 1.72649 1.19420 0.89433 0.84345 0.76686 1.90856 1.18640 1.84891 1.52099 1.23138 1.00139 0.91904 1.09171 1.22712 0.93269 0.96871 0.89797 1.18898 0.95834 0.99086 0.98766 1.20904 0.93614 0.96369 0.98944 1.19910 0.96026 1.02629 0.98747 1.18609 0.86382 0.98836 0.98035 1.41703 1.11146 1.33498 1.32781 0.72927 1.22278 0.99769 0.90956 0.93250 1.21976 0.94770 1.05791 1.04463 1.19514 0.95168 1.00446 1.01118 1.20489 0.92869 0.93292 0.95452 0.92289 0.99949 1.00009 0.75872 0.81528 0.80154 0.82582 0.83411 0.77162 0.84552 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.05 13.29 21.45 0.28 -57.77 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.99 43.46 29.54 68.60 2.03 45.49 16 4 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.56 -31.46 9.28 25.60 0.24 -31.22 16 8 H 0.08 4.27 7.60 -2.91 -0.02 4.24 16 9 C 0.27 15.71 5.43 85.63 0.46 16.17 16 10 N -0.71 -32.02 5.54 -471.21 -2.61 -34.63 16 11 C 0.51 21.95 6.76 86.33 0.58 22.54 16 12 O -0.58 -30.02 12.10 -4.42 -0.05 -30.07 16 13 C -0.22 -6.54 9.91 23.60 0.23 -6.31 16 14 C -0.01 -0.18 9.80 23.83 0.23 0.05 16 15 C -0.12 -4.02 4.56 -20.15 -0.09 -4.12 16 16 C -0.08 -2.13 9.70 22.34 0.22 -1.92 16 17 C -0.15 -4.04 10.00 22.09 0.22 -3.82 16 18 C 0.09 2.76 7.27 39.19 0.28 3.04 16 19 N -0.59 -13.67 6.05 -187.40 -1.13 -14.80 16 20 H 0.43 6.31 8.96 -92.71 -0.83 5.48 16 21 C 0.06 1.54 11.81 82.99 0.98 2.52 16 22 C -0.25 -8.23 11.09 23.53 0.26 -7.97 16 23 C -0.16 -5.96 6.36 -20.21 -0.13 -6.09 16 24 C 0.00 -0.08 6.62 22.80 0.15 0.07 16 25 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 26 H -0.02 -1.14 8.14 -2.38 -0.02 -1.16 16 27 H -0.02 -1.18 8.14 -2.38 -0.02 -1.20 16 28 H 0.41 15.29 8.30 -92.70 -0.77 14.52 16 29 H 0.17 3.45 8.06 -2.91 -0.02 3.42 16 30 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 32 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 33 H 0.21 3.01 8.06 -2.91 -0.02 2.98 16 34 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 35 H 0.08 3.64 6.98 -2.91 -0.02 3.62 16 Total: -1.00 -83.04 306.68 2.15 -80.90 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -0.47 Total: 27.32 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 4.11 Total: -16.43 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -3.46 Total: -107.20 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.05 Total: -30.07 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -83.04 2.15 -80.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787627461.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.695 kcal (2) G-P(sol) polarization free energy of solvation -83.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds