Wall clock time and date at job start Mon Mar 30 2020 01:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33078 * 120.00352 * 2 1 4 4 C 1.46955 * 120.00270 * 172.95826 * 3 2 1 5 5 O 1.21535 * 119.99296 * 354.04095 * 4 3 2 6 6 O 1.34797 * 119.99884 * 174.03893 * 4 3 2 7 7 C 1.45200 * 116.99442 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.46708 * 179.97438 * 7 6 4 9 9 C 1.53005 * 109.47015 * 180.02562 * 8 7 6 10 10 S 1.80999 * 109.47144 * 180.02562 * 9 8 7 11 11 C 1.76198 * 100.00081 * 180.02562 * 10 9 8 12 12 H 1.08008 * 119.99880 * 359.97438 * 11 10 9 13 13 C 1.38796 * 120.00426 * 179.97438 * 11 10 9 14 14 N 1.31631 * 119.99761 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00416 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46787 * 60.00411 * 15 13 11 17 17 H 1.48500 * 109.47237 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47137 * 300.00354 * 15 13 11 19 19 C 1.50705 * 119.99530 * 180.02562 * 2 1 3 20 20 C 1.52997 * 117.49908 * 1.68935 * 19 2 1 21 21 C 1.52993 * 117.50050 * 293.02472 * 19 2 1 22 22 H 1.08999 * 109.47448 * 89.99460 * 1 2 3 23 23 H 1.09001 * 109.47230 * 209.99791 * 1 2 3 24 24 H 1.09001 * 109.46802 * 329.99865 * 1 2 3 25 25 H 1.07997 * 120.00062 * 352.96531 * 3 2 1 26 26 H 1.08997 * 109.47196 * 299.99624 * 7 6 4 27 27 H 1.08999 * 109.47448 * 60.00165 * 7 6 4 28 28 H 1.08997 * 109.47022 * 299.99776 * 8 7 6 29 29 H 1.08994 * 109.47290 * 60.00259 * 8 7 6 30 30 H 1.08997 * 109.46934 * 300.00297 * 9 8 7 31 31 H 1.09007 * 109.47105 * 59.99804 * 9 8 7 32 32 H 0.96999 * 120.00234 * 180.02562 * 14 13 11 33 33 H 1.09003 * 115.54880 * 147.35678 * 19 2 1 34 34 H 1.08998 * 117.50475 * 359.97438 * 20 19 2 35 35 H 1.09002 * 117.49685 * 145.02432 * 20 19 2 36 36 H 1.08996 * 117.49991 * 214.98405 * 21 19 2 37 37 H 1.09001 * 117.49777 * 359.97438 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1525 0.0000 4 6 3.6337 1.1572 0.1560 5 8 4.2228 0.1210 0.3931 6 8 4.3205 2.3109 0.0361 7 6 5.7613 2.2404 0.2019 8 6 6.3631 3.6368 0.0315 9 6 7.8814 3.5625 0.2057 10 16 8.5932 5.2145 0.0049 11 6 10.2987 4.8444 0.2477 12 1 10.6074 3.8295 0.4506 13 6 11.2454 5.8570 0.1782 14 7 10.8691 7.0938 -0.0696 15 14 13.0534 5.4647 0.4363 16 1 13.4988 4.4864 -0.5883 17 1 13.8527 6.7102 0.3126 18 1 13.2459 4.8859 1.7902 19 6 2.2604 -1.3052 -0.0006 20 6 1.4387 -2.5952 -0.0412 21 6 2.1539 -2.1830 1.2480 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6386 2.0842 -0.1145 26 1 5.9944 1.8630 1.1975 27 1 6.1811 1.5703 -0.5482 28 1 6.1300 4.0138 -0.9642 29 1 5.9434 4.3073 0.7814 30 1 8.1148 3.1852 1.2012 31 1 8.3008 2.8921 -0.5445 32 1 11.5307 7.8015 -0.1186 33 1 3.2126 -1.2981 -0.5311 34 1 0.3532 -2.5000 -0.0670 35 1 1.8506 -3.4369 -0.5979 36 1 3.0358 -2.7536 1.5388 37 1 1.5392 -1.8162 2.0700 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805418864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:46 Heat of formation + Delta-G solvation = -63.461716 kcal Electronic energy + Delta-G solvation = -17293.838759 eV Core-core repulsion = 14356.272809 eV Total energy + Delta-G solvation = -2937.565950 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.43987 -38.41526 -36.41875 -33.83512 -33.37404 -32.43371 -28.82866 -26.52415 -25.45949 -23.92091 -22.63662 -21.57658 -21.20342 -18.79524 -17.80187 -17.35315 -16.65982 -16.46516 -15.64101 -14.81584 -14.72813 -14.49050 -13.96895 -13.92900 -13.53841 -13.18875 -12.79243 -12.69261 -12.53666 -12.10809 -11.89884 -11.65551 -11.30011 -11.18810 -11.07993 -10.92809 -10.89930 -10.73831 -10.66207 -10.24224 -10.01079 -9.61721 -9.28290 -9.06069 -8.34710 -6.55348 -6.23660 -3.94717 0.87436 2.71262 2.83749 3.22984 3.23604 3.28157 3.56848 3.64436 4.18601 4.21091 4.44695 4.65037 4.75153 4.80070 5.02286 5.10535 5.12073 5.16829 5.17991 5.24159 5.30959 5.40292 5.46185 5.53191 5.59650 5.80873 5.81755 5.86203 5.89103 6.02021 6.15155 6.23571 6.48009 6.54344 6.71634 7.59650 7.83157 8.35579 9.22461 10.84468 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.049792 B = 0.002572 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.204901 B =10885.913094 C =11357.957938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.004 3.996 3 C -0.202 4.202 4 C 0.491 3.509 5 O -0.509 6.509 6 O -0.354 6.354 7 C 0.074 3.926 8 C -0.098 4.098 9 C -0.114 4.114 10 S -0.124 6.124 11 C -0.519 4.519 12 H 0.073 0.927 13 C 0.071 3.929 14 N -0.870 5.870 15 Si 0.920 3.080 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.129 4.129 20 C -0.186 4.186 21 C -0.154 4.154 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.141 0.859 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.268 0.732 33 H 0.133 0.867 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.098 -15.366 0.197 26.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.003 3.997 3 C -0.221 4.221 4 C 0.338 3.662 5 O -0.400 6.400 6 O -0.270 6.270 7 C -0.001 4.001 8 C -0.136 4.136 9 C -0.263 4.263 10 S 0.104 5.896 11 C -0.667 4.667 12 H 0.091 0.909 13 C -0.138 4.138 14 N -0.505 5.505 15 Si 0.746 3.254 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.147 4.147 20 C -0.223 4.223 21 C -0.191 4.191 22 H 0.102 0.898 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.159 0.841 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.151 0.849 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.313 -14.443 0.025 25.746 hybrid contribution 1.970 -1.344 0.431 2.424 sum -19.343 -15.787 0.456 24.972 Atomic orbital electron populations 1.21034 0.90385 1.03673 1.03418 1.21934 0.95646 0.93045 0.89055 1.21719 0.90216 0.99446 1.10717 1.21448 0.89287 0.81566 0.73888 1.90808 1.71434 1.32804 1.44946 1.86574 1.23218 1.35116 1.82135 1.23220 0.75181 0.99616 1.02075 1.21280 0.94158 0.94170 1.04034 1.23179 0.95659 1.04178 1.03237 1.84648 1.06131 1.05100 1.93716 1.22656 0.90665 0.97076 1.56273 0.90906 1.25018 0.99654 0.94499 0.94603 1.70009 1.34714 0.99919 1.45869 0.86203 0.82423 0.77833 0.78947 1.19910 1.20799 1.19913 1.21557 1.00832 0.88120 1.04172 1.23151 0.99092 0.98285 1.01733 1.22848 1.02831 1.02198 0.91242 0.89831 0.90503 0.90480 0.84081 0.91261 0.91298 0.90392 0.90383 0.91761 0.91765 0.92201 0.84921 0.88456 0.88458 0.88295 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.69 9.49 36.01 0.34 -0.35 16 2 C 0.00 0.03 5.81 -101.14 -0.59 -0.55 16 3 C -0.20 -2.07 9.75 -37.85 -0.37 -2.44 16 4 C 0.49 6.76 7.82 34.26 0.27 7.03 16 5 O -0.51 -7.87 13.11 -19.29 -0.25 -8.13 16 6 O -0.35 -5.24 10.23 -40.76 -0.42 -5.65 16 7 C 0.07 1.13 5.48 37.16 0.20 1.33 16 8 C -0.10 -1.66 5.60 -26.73 -0.15 -1.81 16 9 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 10 S -0.12 -3.26 21.44 -107.50 -2.30 -5.57 16 11 C -0.52 -14.94 9.50 30.94 0.29 -14.64 16 12 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 13 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 14 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 15 Si 0.92 21.63 29.55 -169.99 -5.02 16.60 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.13 -1.25 4.34 -91.77 -0.40 -1.65 16 20 C -0.19 -1.33 9.79 -26.69 -0.26 -1.59 16 21 C -0.15 -1.32 10.24 -26.70 -0.27 -1.60 16 22 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.08 0.34 6.37 -51.93 -0.33 0.01 16 24 H 0.08 0.34 8.07 -51.93 -0.42 -0.07 16 25 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.06 1.29 8.14 -51.92 -0.42 0.86 16 31 H 0.06 1.29 8.14 -51.91 -0.42 0.86 16 32 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.13 1.60 6.24 -51.93 -0.32 1.27 16 34 H 0.10 0.54 6.31 -51.93 -0.33 0.21 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -32.16 330.41 -8.70 -40.86 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.60 Total: -1.35 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -0.82 Total: -16.44 kcal Atomic # 7 Polarization: -26.04 SS G_CDS: 0.73 Total: -25.31 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.67 Total: -13.78 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -2.30 Total: -5.57 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.16 -8.70 -40.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805418864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.604 kcal (2) G-P(sol) polarization free energy of solvation -32.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds