Wall clock time and date at job start Mon Mar 30 2020 01:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33078 * 120.00352 * 2 1 4 4 C 1.46955 * 120.00270 * 172.95826 * 3 2 1 5 5 O 1.21535 * 119.99296 * 354.04095 * 4 3 2 6 6 O 1.34797 * 119.99884 * 174.03893 * 4 3 2 7 7 C 1.45200 * 116.99442 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.46708 * 179.97438 * 7 6 4 9 9 C 1.53005 * 109.47015 * 180.02562 * 8 7 6 10 10 S 1.80999 * 109.47144 * 180.02562 * 9 8 7 11 11 C 1.76198 * 100.00081 * 180.02562 * 10 9 8 12 12 H 1.08008 * 119.99880 * 359.97438 * 11 10 9 13 13 C 1.38796 * 120.00426 * 179.97438 * 11 10 9 14 14 N 1.31631 * 119.99761 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00416 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46787 * 60.00411 * 15 13 11 17 17 H 1.48500 * 109.47237 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47137 * 300.00354 * 15 13 11 19 19 C 1.50705 * 119.99530 * 180.02562 * 2 1 3 20 20 C 1.52997 * 117.49908 * 1.68935 * 19 2 1 21 21 C 1.52993 * 117.50050 * 293.02472 * 19 2 1 22 22 H 1.08999 * 109.47448 * 89.99460 * 1 2 3 23 23 H 1.09001 * 109.47230 * 209.99791 * 1 2 3 24 24 H 1.09001 * 109.46802 * 329.99865 * 1 2 3 25 25 H 1.07997 * 120.00062 * 352.96531 * 3 2 1 26 26 H 1.08997 * 109.47196 * 299.99624 * 7 6 4 27 27 H 1.08999 * 109.47448 * 60.00165 * 7 6 4 28 28 H 1.08997 * 109.47022 * 299.99776 * 8 7 6 29 29 H 1.08994 * 109.47290 * 60.00259 * 8 7 6 30 30 H 1.08997 * 109.46934 * 300.00297 * 9 8 7 31 31 H 1.09007 * 109.47105 * 59.99804 * 9 8 7 32 32 H 0.96999 * 120.00234 * 180.02562 * 14 13 11 33 33 H 1.09003 * 115.54880 * 147.35678 * 19 2 1 34 34 H 1.08998 * 117.50475 * 359.97438 * 20 19 2 35 35 H 1.09002 * 117.49685 * 145.02432 * 20 19 2 36 36 H 1.08996 * 117.49991 * 214.98405 * 21 19 2 37 37 H 1.09001 * 117.49777 * 359.97438 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1525 0.0000 4 6 3.6337 1.1572 0.1560 5 8 4.2228 0.1210 0.3931 6 8 4.3205 2.3109 0.0361 7 6 5.7613 2.2404 0.2019 8 6 6.3631 3.6368 0.0315 9 6 7.8814 3.5625 0.2057 10 16 8.5932 5.2145 0.0049 11 6 10.2987 4.8444 0.2477 12 1 10.6074 3.8295 0.4506 13 6 11.2454 5.8570 0.1782 14 7 10.8691 7.0938 -0.0696 15 14 13.0534 5.4647 0.4363 16 1 13.4988 4.4864 -0.5883 17 1 13.8527 6.7102 0.3126 18 1 13.2459 4.8859 1.7902 19 6 2.2604 -1.3052 -0.0006 20 6 1.4387 -2.5952 -0.0412 21 6 2.1539 -2.1830 1.2480 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6386 2.0842 -0.1145 26 1 5.9944 1.8630 1.1975 27 1 6.1811 1.5703 -0.5482 28 1 6.1300 4.0138 -0.9642 29 1 5.9434 4.3073 0.7814 30 1 8.1148 3.1852 1.2012 31 1 8.3008 2.8921 -0.5445 32 1 11.5307 7.8015 -0.1186 33 1 3.2126 -1.2981 -0.5311 34 1 0.3532 -2.5000 -0.0670 35 1 1.8506 -3.4369 -0.5979 36 1 3.0358 -2.7536 1.5388 37 1 1.5392 -1.8162 2.0700 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805418864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:46 Heat of formation + Delta-G solvation = -80.368176 kcal Electronic energy + Delta-G solvation = -17294.571879 eV Core-core repulsion = 14356.272809 eV Total energy + Delta-G solvation = -2938.299069 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.48754 -39.19893 -37.50885 -34.92489 -34.60391 -34.41164 -29.54715 -28.08093 -27.34887 -24.75855 -23.27378 -22.84010 -22.29453 -19.74248 -19.44371 -18.72641 -17.71082 -17.49285 -16.90861 -16.51770 -16.14767 -15.86325 -15.26476 -14.68556 -14.50780 -14.19349 -13.95069 -13.85685 -13.78766 -13.22084 -13.11984 -12.94234 -12.68090 -12.61708 -12.40703 -12.36664 -12.23102 -11.81979 -11.58579 -11.52185 -11.42833 -11.15182 -10.88068 -10.38645 -9.99466 -8.70107 -8.39011 -6.16170 0.07067 1.27445 1.40537 1.44322 1.54037 1.88877 1.91607 2.26200 2.95310 2.98785 3.27355 3.51851 3.70330 3.82242 3.94485 3.98027 4.05297 4.13111 4.19653 4.30332 4.34358 4.50759 4.61567 4.65561 4.72025 4.80076 4.94978 4.98993 5.02621 5.12334 5.15217 5.23328 5.34743 5.38176 5.40854 5.61769 6.16376 6.77110 7.03022 8.70202 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.049792 B = 0.002572 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.204901 B =10885.913094 C =11357.957938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.026 3.974 3 C -0.229 4.229 4 C 0.484 3.516 5 O -0.535 6.535 6 O -0.360 6.360 7 C 0.083 3.917 8 C -0.086 4.086 9 C -0.091 4.091 10 S -0.185 6.185 11 C -0.542 4.542 12 H 0.074 0.926 13 C 0.016 3.984 14 N -0.906 5.906 15 Si 0.995 3.005 16 H -0.265 1.265 17 H -0.274 1.274 18 H -0.265 1.265 19 C -0.158 4.158 20 C -0.160 4.160 21 C -0.161 4.161 22 H 0.101 0.899 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.162 0.838 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.272 0.728 33 H 0.103 0.897 34 H 0.123 0.877 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.494 -16.824 0.361 28.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.025 3.975 3 C -0.247 4.247 4 C 0.333 3.667 5 O -0.427 6.427 6 O -0.277 6.277 7 C 0.007 3.993 8 C -0.124 4.124 9 C -0.240 4.240 10 S 0.044 5.956 11 C -0.689 4.689 12 H 0.092 0.908 13 C -0.190 4.190 14 N -0.543 5.543 15 Si 0.817 3.183 16 H -0.189 1.189 17 H -0.199 1.199 18 H -0.189 1.189 19 C -0.176 4.176 20 C -0.197 4.197 21 C -0.198 4.198 22 H 0.119 0.881 23 H 0.110 0.890 24 H 0.109 0.891 25 H 0.180 0.820 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.141 0.859 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -22.729 -15.903 0.187 27.741 hybrid contribution 2.291 -1.007 0.369 2.530 sum -20.438 -16.910 0.556 26.533 Atomic orbital electron populations 1.21166 0.87290 1.05087 1.04846 1.22328 0.97547 0.91893 0.85722 1.21836 0.88057 1.01105 1.13718 1.22183 0.90580 0.80745 0.73170 1.90802 1.72143 1.33363 1.46432 1.86564 1.22610 1.36083 1.82486 1.22954 0.75998 0.98093 1.02241 1.21100 0.91772 0.95437 1.04107 1.23062 0.97474 0.99930 1.03514 1.84629 1.06409 1.10592 1.93994 1.23020 0.91802 0.97420 1.56707 0.90796 1.26078 1.04830 0.94175 0.93867 1.70139 1.36513 1.01010 1.46605 0.85054 0.75968 0.78038 0.79283 1.18941 1.19862 1.18946 1.21523 1.00810 0.89990 1.05235 1.23262 1.00143 0.96475 0.99818 1.22909 1.03124 1.01978 0.91805 0.88088 0.89035 0.89148 0.82049 0.91109 0.91134 0.90330 0.90304 0.91373 0.91378 0.91859 0.87950 0.85936 0.88003 0.89302 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 9.49 71.24 0.68 -0.23 16 2 C 0.03 0.41 5.81 -17.60 -0.10 0.30 16 3 C -0.23 -4.45 9.75 23.40 0.23 -4.22 16 4 C 0.48 13.37 7.82 70.11 0.55 13.92 16 5 O -0.53 -16.94 13.11 19.72 0.26 -16.68 16 6 O -0.36 -10.63 10.23 -57.09 -0.58 -11.22 16 7 C 0.08 2.50 5.48 71.98 0.39 2.89 16 8 C -0.09 -2.88 5.60 30.60 0.17 -2.71 16 9 C -0.09 -3.71 5.67 71.98 0.41 -3.30 16 10 S -0.18 -9.92 21.44 -56.49 -1.21 -11.13 16 11 C -0.54 -31.54 9.50 67.95 0.65 -30.90 16 12 H 0.07 4.13 7.80 -2.91 -0.02 4.11 16 13 C 0.02 0.89 5.49 84.86 0.47 1.36 16 14 N -0.91 -54.94 13.22 21.65 0.29 -54.65 16 15 Si 0.99 44.18 29.55 68.60 2.03 46.21 16 16 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 19 C -0.16 -2.92 4.34 -11.54 -0.05 -2.97 16 20 C -0.16 -1.92 9.79 30.62 0.30 -1.62 16 21 C -0.16 -2.58 10.24 30.62 0.31 -2.26 16 22 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 23 H 0.09 0.42 6.37 -2.39 -0.02 0.41 16 24 H 0.09 0.47 8.07 -2.39 -0.02 0.45 16 25 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 26 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.07 2.72 8.14 -2.40 -0.02 2.70 16 31 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.10 2.55 6.24 -2.39 -0.01 2.54 16 34 H 0.12 0.86 6.31 -2.39 -0.02 0.84 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 1.41 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -70.57 330.41 5.82 -64.75 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 1.05 Total: 12.47 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 4.00 Total: -29.74 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.29 Total: -54.65 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.33 Total: -27.90 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -9.92 SS G_CDS: -1.21 Total: -11.13 kcal Total: -70.57 5.82 -64.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805418864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.621 kcal (2) G-P(sol) polarization free energy of solvation -70.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds