Wall clock time and date at job start Mon Mar 30 2020 01:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 120.00094 * 2 1 4 4 H 1.48501 * 109.47523 * 240.00092 * 3 2 1 5 5 H 1.48498 * 109.47375 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46965 * 120.00203 * 3 2 1 7 7 C 1.38799 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00043 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.81009 * 99.99991 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46959 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46623 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.47003 * 179.97438 * 12 11 10 14 14 C 1.34796 * 117.00201 * 180.02562 * 13 12 11 15 15 O 1.21529 * 119.99814 * 359.97438 * 14 13 12 16 16 C 1.46948 * 120.00174 * 180.02562 * 14 13 12 17 17 C 1.33085 * 120.00230 * 179.97438 * 16 14 13 18 18 C 1.51450 * 126.33693 * 359.68837 * 17 16 14 19 19 C 1.54278 * 106.84911 * 180.24079 * 18 17 16 20 20 C 1.54983 * 103.66017 * 23.48248 * 19 18 17 21 21 C 1.51838 * 126.34290 * 179.97438 * 17 16 14 22 22 H 0.97009 * 119.99700 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47056 * 59.99728 * 10 9 7 24 24 H 1.09001 * 109.46459 * 299.99822 * 10 9 7 25 25 H 1.09000 * 109.47486 * 59.99958 * 11 10 9 26 26 H 1.09001 * 109.47362 * 299.99235 * 11 10 9 27 27 H 1.08993 * 109.46955 * 300.00075 * 12 11 10 28 28 H 1.09000 * 109.47050 * 59.99904 * 12 11 10 29 29 H 1.08003 * 119.99815 * 359.97438 * 16 14 13 30 30 H 1.08997 * 109.98144 * 299.72713 * 18 17 16 31 31 H 1.08996 * 109.98249 * 61.03134 * 18 17 16 32 32 H 1.08993 * 110.79875 * 264.86150 * 19 18 17 33 33 H 1.08995 * 110.43025 * 141.92642 * 19 18 17 34 34 H 1.08999 * 110.83728 * 204.48976 * 20 19 18 35 35 H 1.09000 * 110.83276 * 80.90987 * 20 19 18 36 36 H 1.09007 * 110.44332 * 274.92504 * 21 17 16 37 37 H 1.09001 * 110.44562 * 37.32317 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7279 -0.0019 10 6 2.5157 -3.8915 -0.0029 11 6 1.9791 -5.3243 -0.0049 12 6 3.1512 -6.3078 -0.0064 13 8 2.6420 -7.6676 -0.0076 14 6 3.5521 -8.6619 -0.0085 15 8 4.7387 -8.3995 -0.0087 16 6 3.1094 -10.0631 -0.0103 17 6 4.0080 -11.0448 -0.0117 18 6 5.5138 -10.8831 -0.0183 19 6 6.1161 -12.3035 -0.0236 20 6 4.9846 -13.1786 -0.6202 21 6 3.7133 -12.5344 -0.0131 22 1 -0.4850 0.8401 0.0004 23 1 3.1244 -3.7322 0.8872 24 1 3.1243 -3.7306 -0.8928 25 1 1.3707 -5.4833 -0.8952 26 1 1.3703 -5.4855 0.8848 27 1 3.7596 -6.1465 -0.8962 28 1 3.7599 -6.1489 0.8837 29 1 2.0549 -10.2963 -0.0105 30 1 5.8262 -10.3404 -0.9104 31 1 5.8349 -10.3479 0.8753 32 1 6.3558 -12.6260 0.9895 33 1 7.0020 -12.3387 -0.6576 34 1 5.0853 -14.2150 -0.2981 35 1 4.9732 -13.1089 -1.7079 36 1 3.5539 -12.8919 1.0042 37 1 2.8424 -12.7496 -0.6322 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805422054.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:09 Heat of formation + Delta-G solvation = -103.682897 kcal Electronic energy + Delta-G solvation = -17206.732517 eV Core-core repulsion = 14267.422446 eV Total energy + Delta-G solvation = -2939.310072 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.38170 -38.49860 -36.48023 -33.46161 -32.43641 -32.20405 -29.22710 -27.16000 -25.77936 -25.18873 -21.83454 -21.25276 -21.20541 -18.72288 -17.71720 -17.34228 -16.55413 -16.30483 -15.86313 -15.19846 -14.80961 -14.56689 -14.25082 -13.73425 -13.38695 -13.10461 -12.69733 -12.64143 -12.41972 -12.08850 -11.73580 -11.57304 -11.43384 -11.28824 -11.11568 -11.03430 -10.91895 -10.90054 -10.67022 -10.30817 -10.23699 -9.62267 -9.50166 -9.06006 -8.34688 -6.55314 -6.23632 -3.94656 0.94423 2.66935 2.88234 3.22806 3.23674 3.28202 3.55812 4.05471 4.21114 4.21896 4.59627 4.68674 4.84769 5.00678 5.05659 5.12064 5.15659 5.16643 5.23764 5.33244 5.40054 5.45383 5.52371 5.54643 5.64846 5.75838 5.80753 5.87733 5.90084 6.06514 6.12634 6.21450 6.47926 6.51457 6.70943 7.59725 7.81154 8.35637 9.22482 10.84451 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.065200 B = 0.002421 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.343948 B =11561.846304 C =11929.109052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.073 0.927 9 S -0.124 6.124 10 C -0.114 4.114 11 C -0.098 4.098 12 C 0.074 3.926 13 O -0.353 6.353 14 C 0.494 3.506 15 O -0.515 6.515 16 C -0.197 4.197 17 C -0.023 4.023 18 C -0.101 4.101 19 C -0.129 4.129 20 C -0.125 4.125 21 C -0.101 4.101 22 H 0.268 0.732 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.143 0.857 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.193 -25.437 -0.188 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.667 4.667 8 H 0.091 0.909 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.001 4.001 13 O -0.269 6.269 14 C 0.341 3.659 15 O -0.406 6.406 16 C -0.216 4.216 17 C -0.024 4.024 18 C -0.137 4.137 19 C -0.167 4.167 20 C -0.162 4.162 21 C -0.138 4.138 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.160 0.840 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.242 -25.373 -0.189 26.387 hybrid contribution 1.893 1.483 0.015 2.404 sum 9.134 -23.890 -0.174 25.578 Atomic orbital electron populations 1.70015 1.05919 1.27497 1.47064 1.25022 0.95111 0.99126 0.94547 0.86199 0.79210 0.81093 0.78873 1.19913 1.20806 1.19916 1.22655 0.94557 0.90703 1.58754 0.90900 1.84650 1.08856 0.99208 1.96883 1.23179 1.03382 0.96385 1.03307 1.21282 0.96501 0.91565 1.04289 1.23232 0.97672 0.76728 1.02468 1.86566 1.39807 1.16824 1.83749 1.21364 0.84197 0.87160 0.73193 1.90827 1.18109 1.85346 1.46334 1.21239 1.00682 0.88079 1.11636 1.23065 0.95985 0.95031 0.88324 1.21419 0.90927 0.97164 1.04204 1.22475 0.98198 0.94660 1.01364 1.22548 0.93941 0.99136 1.00604 1.21630 0.99272 0.90475 1.02425 0.92207 0.91749 0.91758 0.90373 0.90369 0.91248 0.91257 0.83969 0.89257 0.89388 0.91203 0.91054 0.90780 0.90950 0.89059 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -14.94 9.50 30.94 0.29 -14.64 16 8 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 9 S -0.12 -3.26 21.44 -107.50 -2.30 -5.57 16 10 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 11 C -0.10 -1.65 5.60 -26.73 -0.15 -1.80 16 12 C 0.07 1.13 5.48 37.16 0.20 1.33 16 13 O -0.35 -5.24 10.23 -40.76 -0.42 -5.65 16 14 C 0.49 6.84 7.90 34.26 0.27 7.12 16 15 O -0.51 -8.09 13.90 -19.29 -0.27 -8.36 16 16 C -0.20 -2.04 10.06 -37.85 -0.38 -2.42 16 17 C -0.02 -0.21 6.16 -100.21 -0.62 -0.82 16 18 C -0.10 -0.91 4.81 -26.85 -0.13 -1.04 16 19 C -0.13 -0.82 6.88 -25.01 -0.17 -0.99 16 20 C -0.12 -0.66 6.94 -24.68 -0.17 -0.83 16 21 C -0.10 -0.59 6.64 -26.31 -0.17 -0.77 16 22 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 24 H 0.06 1.29 8.14 -51.92 -0.42 0.86 16 25 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 30 H 0.09 0.93 7.67 -51.93 -0.40 0.53 16 31 H 0.09 0.91 7.68 -51.93 -0.40 0.51 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 328.02 15.07 4.94 4.94 Total: -1.00 -32.09 328.02 -9.08 -41.17 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -5.84 Total: -2.79 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -0.91 Total: -15.05 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.73 Total: -25.30 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.69 Total: -14.01 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -2.30 Total: -5.57 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.09 -9.08 -41.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805422054.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.508 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds