Wall clock time and date at job start Mon Mar 30 2020 01:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86803 * 119.99648 * 2 1 4 4 H 1.48495 * 109.47426 * 269.99894 * 3 2 1 5 5 H 1.48496 * 109.47363 * 30.00638 * 3 2 1 6 6 H 1.48507 * 109.47066 * 150.00123 * 3 2 1 7 7 C 1.38793 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99930 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00481 * 179.97438 * 7 2 1 10 10 C 1.80992 * 100.00320 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47354 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47547 * 180.02562 * 11 10 9 13 13 O 1.45197 * 109.47391 * 180.02562 * 12 11 10 14 14 C 1.34225 * 117.00149 * 179.97438 * 13 12 11 15 15 O 1.20824 * 120.00048 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00291 * 179.97438 * 14 13 12 17 17 H 1.09001 * 115.57445 * 34.23265 * 16 14 13 18 18 C 1.53115 * 117.51396 * 248.46341 * 16 14 13 19 19 C 1.52458 * 59.85790 * 252.54885 * 18 16 14 20 20 C 1.53255 * 128.58593 * 117.59866 * 19 18 16 21 21 C 1.53886 * 86.88455 * 114.94458 * 20 19 18 22 22 C 1.53419 * 128.52230 * 242.35595 * 19 18 16 23 23 H 0.96999 * 119.99720 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47288 * 59.99887 * 10 9 7 25 25 H 1.08996 * 109.47306 * 299.99977 * 10 9 7 26 26 H 1.08997 * 109.47361 * 59.99890 * 11 10 9 27 27 H 1.09011 * 109.47400 * 300.00178 * 11 10 9 28 28 H 1.08997 * 109.47157 * 59.99426 * 12 11 10 29 29 H 1.09000 * 109.46442 * 299.99887 * 12 11 10 30 30 H 1.09003 * 117.51695 * 145.10139 * 18 16 14 31 31 H 1.09001 * 117.51320 * 359.97438 * 18 16 14 32 32 H 1.09009 * 113.64453 * 0.45127 * 20 19 18 33 33 H 1.08997 * 113.72782 * 229.45902 * 20 19 18 34 34 H 1.09002 * 113.58838 * 139.57331 * 21 20 19 35 35 H 1.08999 * 113.58827 * 270.31714 * 21 20 19 36 36 H 1.08994 * 113.64612 * 130.53962 * 22 19 18 37 37 H 1.09008 * 113.69177 * 359.49093 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0466 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4403 0.7000 7 6 2.0104 -1.2019 -0.0005 8 1 1.4704 -2.1373 -0.0014 9 16 3.7724 -1.2020 -0.0012 10 6 4.0867 -2.9844 -0.0009 11 6 5.5958 -3.2362 -0.0021 12 6 5.8616 -4.7429 -0.0025 13 8 7.2937 -4.9818 -0.0030 14 6 7.6981 -6.2618 -0.0029 15 8 6.8823 -7.1530 -0.0019 16 6 9.1695 -6.5872 -0.0040 17 1 9.8050 -5.8949 0.5484 18 6 9.7515 -7.2272 -1.2674 19 6 9.5652 -8.0596 -0.0038 20 6 8.6747 -9.2886 0.2086 21 6 9.9724 -10.0878 0.4216 22 6 10.6336 -8.7636 0.8428 23 1 -0.4850 0.8401 0.0004 24 1 3.6434 -3.4317 -0.8907 25 1 3.6442 -3.4313 0.8893 26 1 6.0395 -2.7889 0.8873 27 1 6.0381 -2.7894 -0.8927 28 1 5.4179 -5.1899 -0.8922 29 1 5.4193 -5.1900 0.8878 30 1 10.7698 -6.9559 -1.5461 31 1 9.0699 -7.4131 -2.0974 32 1 8.1196 -9.5854 -0.6814 33 1 8.0477 -9.2275 1.0981 34 1 9.9072 -10.8186 1.2278 35 1 10.3822 -10.5071 -0.4972 36 1 10.5537 -8.5548 1.9096 37 1 11.6470 -8.6399 0.4605 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805492732.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:18 Heat of formation + Delta-G solvation = -73.597587 kcal Electronic energy + Delta-G solvation = -17452.073656 eV Core-core repulsion = 14514.068181 eV Total energy + Delta-G solvation = -2938.005475 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.83539 -40.07550 -37.72767 -35.03903 -34.70898 -34.63116 -28.48877 -27.83997 -26.61543 -25.50682 -23.98082 -22.79230 -21.58762 -19.66945 -19.31603 -18.80480 -17.78734 -17.49008 -17.11800 -16.27047 -16.18425 -16.09696 -15.86084 -15.00769 -14.83804 -14.25265 -14.07040 -13.72040 -13.37046 -13.27416 -13.08457 -13.03606 -12.64013 -12.50451 -12.42796 -12.37942 -12.25876 -11.82260 -11.57490 -11.56028 -11.18069 -11.13942 -11.06790 -10.77194 -10.62791 -9.02865 -8.53510 -6.26116 1.01379 1.04211 1.32140 1.41681 1.49841 1.81041 2.23664 2.63717 2.64971 2.84420 3.33083 3.56654 3.63830 3.78904 3.81691 3.88218 3.92568 3.96246 4.08489 4.24701 4.44457 4.48911 4.59268 4.61916 4.75486 4.84731 4.87250 4.95084 4.96049 5.07022 5.10057 5.12298 5.33493 5.40793 5.49987 5.67868 6.08648 6.67923 6.89867 8.59573 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.062528 B = 0.002635 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.692369 B =10622.245778 C =10902.459382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.036 3.964 3 Si 0.927 3.073 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.227 1.227 7 C -0.526 4.526 8 H 0.051 0.949 9 S -0.205 6.205 10 C -0.074 4.074 11 C -0.087 4.087 12 C 0.079 3.921 13 O -0.355 6.355 14 C 0.485 3.515 15 O -0.534 6.534 16 C -0.169 4.169 17 H 0.155 0.845 18 C -0.103 4.103 19 C -0.134 4.134 20 C -0.101 4.101 21 C -0.132 4.132 22 C -0.088 4.088 23 H 0.277 0.723 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.143 0.857 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.613 -16.098 -0.096 30.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.168 4.168 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.150 1.150 7 C -0.674 4.674 8 H 0.069 0.931 9 S 0.023 5.977 10 C -0.223 4.223 11 C -0.125 4.125 12 C 0.003 3.997 13 O -0.272 6.272 14 C 0.330 3.670 15 O -0.424 6.424 16 C -0.188 4.188 17 H 0.173 0.827 18 C -0.140 4.140 19 C -0.135 4.135 20 C -0.138 4.138 21 C -0.170 4.170 22 C -0.125 4.125 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.161 0.839 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 25.868 -15.363 -0.091 30.087 hybrid contribution -2.068 -0.295 -0.005 2.089 sum 23.800 -15.658 -0.096 28.489 Atomic orbital electron populations 1.70043 1.07709 1.29197 1.49034 1.25814 0.95460 1.02907 0.92657 0.85694 0.80791 0.78429 0.80316 1.18484 1.18722 1.14999 1.22345 0.90072 0.96341 1.58602 0.93114 1.83797 1.07507 1.08800 1.97591 1.22968 0.98851 0.96248 1.04186 1.21142 0.92897 0.93426 1.05073 1.23000 0.77092 0.96803 1.02794 1.86455 1.27874 1.29249 1.83573 1.23303 0.92205 0.80125 0.71341 1.90649 1.56451 1.48535 1.46724 1.21858 0.88620 0.99862 1.08423 0.82749 1.23032 1.03585 0.97890 0.89445 1.22728 1.01131 0.88241 1.01354 1.22411 0.96352 0.93708 1.01324 1.22794 0.95329 0.96344 1.02503 1.22562 0.97088 0.93654 0.99196 0.91337 0.91115 0.91093 0.89594 0.89554 0.91065 0.91111 0.83912 0.88610 0.92581 0.91128 0.90337 0.88972 0.89112 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.98 13.97 21.65 0.30 -56.68 16 2 C 0.04 2.14 5.50 84.86 0.47 2.61 16 3 Si 0.93 43.87 27.74 68.60 1.90 45.77 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.23 -10.26 6.74 99.48 0.67 -9.59 16 7 C -0.53 -31.10 10.04 67.95 0.68 -30.42 16 8 H 0.05 3.27 8.03 -2.91 -0.02 3.25 16 9 S -0.20 -9.78 19.41 -56.49 -1.10 -10.88 16 10 C -0.07 -2.81 5.67 71.98 0.41 -2.40 16 11 C -0.09 -2.58 5.60 30.59 0.17 -2.40 16 12 C 0.08 2.16 5.47 71.98 0.39 2.56 16 13 O -0.35 -9.39 10.22 -51.37 -0.52 -9.92 16 14 C 0.49 12.28 7.74 71.24 0.55 12.83 16 15 O -0.53 -16.39 14.90 21.97 0.33 -16.07 16 16 C -0.17 -2.88 6.30 -11.68 -0.07 -2.95 16 17 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 18 C -0.10 -1.31 10.23 30.45 0.31 -1.00 16 19 C -0.13 -2.00 2.88 -52.32 -0.15 -2.15 16 20 C -0.10 -1.77 6.48 30.98 0.20 -1.56 16 21 C -0.13 -1.46 8.07 31.19 0.25 -1.21 16 22 C -0.09 -0.88 8.11 31.04 0.25 -0.62 16 23 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 24 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 25 H 0.07 2.71 8.14 -2.40 -0.02 2.69 16 26 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 28 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 29 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 30 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.07 1.47 8.05 -2.39 -0.02 1.45 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 Total: -1.00 -69.55 327.65 5.37 -64.17 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.00 Total: 10.32 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 3.47 Total: -26.72 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.30 Total: -56.68 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.20 Total: -25.98 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.90 Total: 45.77 kcal Atomic # 16 Polarization: -9.78 SS G_CDS: -1.10 Total: -10.88 kcal Total: -69.55 5.37 -64.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805492732.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.427 kcal (2) G-P(sol) polarization free energy of solvation -69.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds